The compositional transition between the genomes of cold- and warm-blooded vertebrates: Codon frequencies in orthologous genes

Gene

Volumn 261, Issue 1, 2000, Pages 71-83

  Cruveiller, Stéphane ^a,b   D'Onofrio, Giuseppe ^a   Bernardi, Giorgio ^a  

^a STAZIONE ZOOLOGICA ANTON DOHRN   (Italy)

^b INSTITUT JACQUES MONOD   (France)

Author keywords

Birds; Genes; Isochores; Mammals; Xenopus

Indexed keywords

AMINO ACID; CYTOSINE; GUANINE;

AMINO ACID COMPOSITION; ARTICLE; CHICKEN; CODON; CONTROLLED STUDY; CORRELATION FUNCTION; DNA BASE COMPOSITION; GC RICH SEQUENCE; GENE SEQUENCE; GENOME; HISTOGRAM; HUMAN; MOLECULAR EVOLUTION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; XENOPUS;

AMINO ACIDS; ANIMALS; BASE COMPOSITION; CHICKENS; CODON; DATABASES, FACTUAL; GENE FREQUENCY; GENES; GENOME; HUMANS; PHYLOGENY; VERTEBRATES; XENOPUS;

AVES; GALLUS GALLUS; MAMMALIA; VERTEBRATA;

EID: 0034736525     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00520-5     Document Type: Article

References (26)

1. CpG islands: Features and distribution in the genome of vertebrates
2. CpG islands, genes and isochores in the genome of vertebrates
3. Phylogeny of the major tetrapod groups, morphological data and divergence dates
4. Isochores and the evolutionary genomics of vertebrates
5. The compositional evolution of vertebrate genomes
6. Compositional patterns in the nuclear genomes of cold-blooded vertebrates
7. Compositional transitions in the nuclear genomes of cold-blooded vertebrates
8. Compositional properties of nuclear genes from cold-blooded vertebrates
9. The mosaic genome of warm-blooded vertebrates
10. Compositional patterns in vertebrate genomes: Conservation and change in evolution
11. Different hydrophobicities of orthologous proteins from Xenopus and man
12. Evolutionary genomics of vertebrates and its implications
13. HOVERGEN: Homologous Vertebrate Genes data base
14. CLEANUP: A fast computer programme for removing redudancies from nucleotide sequence databank
15. Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships
16. A molecular phylogeny of reptiles
17. Warm-blooded isochores structure in nile crocodile and turtle
18. The compositional patterns of the avian genomes and their evolutionary implications
19. Compositional compartmentalization and gene composition in the genome of vertebrates
20. The compositional distribution of coding sequences and DNA molecules in humans and murids
21. Directional fixation of mutations in vertebrate evolution
22. The isochore patterns of mammalian genomes and their phylogenetic implications
23. An analysis of eukaryotic genomes by density gradient centrifugation