Analysis of unique variable region of a plant root inducing plasmid, pRi1724, by the construction of its physical map and library

DNA Research

Volumn 7, Issue 3, 2000, Pages 157-163

  Moriguchi, Kazuki ^a   Maeda, Yasunobu ^a   Satou, Megumi ^a   Kataoka, Miho ^a   Tanaka, Nobukazu ^a   Yoshida, Kazuo ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

Author keywords

Agrobacterium rhizogenes; Physical map; Ri plasmid; VAR (variable region)

Indexed keywords

AGROBACTERIUM RHIZOGENES; VIR;

ABC TRANSPORTER;

ARTICLE; BIOLOGICAL MODEL; CHROMOSOME MAP; DNA SEQUENCE; GENE LIBRARY; GENETICS; MOLECULAR GENETICS; OPEN READING FRAME; PLASMID; RHIZOBIUM;

ATP-BINDING CASSETTE TRANSPORTERS; GENE LIBRARY; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYSICAL CHROMOSOME MAPPING; PLASMIDS; RHIZOBIUM; SEQUENCE ANALYSIS, DNA;

EID: 0034733209     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/7.3.157     Document Type: Article

References (25)

1. Zambryski, P., Tempé, J., and Schell, J. 1989, Transfer and function of T-DNA genes from Agrobacterium Ti and Ri plasmids in plants, Cell, 56, 193-201.
2. Tanaka, N. and Oka, A. 1994a, Nucleotide sequence of the rol region of the mikimopine-type root-inducing plasmid pRi1724, Biosci. Biotech. Biochem., 58, 548-551.
3. Liang, Y., Aoyama, T., and Oka, A. 1998, Structural characterization of the virB operon on the hairy-root-inducing plasmid A4, DNA Res., 5, 87-93.
4. Suzuki, K., Hattori, Y., Uraji, M., Ohta, N., Iwata, K., Murata, K., Kato, A., and Yoshida, K. 2000, Complete nucleotide sequence of a plant tumor-inducing Ti plasmid, Gene, 242, 331-336.
5. Nishikawa, M., Suzuki, K., and Yoshida, K. 1990, Structural and functional stability of IncP plasmids during stepwise transmission by trans-kingdom mating: Promiscuous conjugation of Escherichia coli and Saccharomyces cerevisiae, Jpn. J. Genet., 65, 323-334.
6. Nishikawa, M., Suzuki, K., and Yoshida, K. 1992, DNA integration into recipient yeast chromosomes by transkingdom conjugation between Eschelichia coli and Saccharomyces cerevisiae, Current Genet., 21, 101-108.
7. Yoshida, K., Kamiji, K., Mahmood, A., Sekito, T., and Ishitomi, H. 1997, In: Schenk, H. E. A., Herrman, R., Jeon, K. W., Muller, N. E., and Schwemmler, W. (eds) Eukaryotism and Symbiosis, Springer-Verlag Press, Berlin, Heidelberg, pp. 153-164.
8. Sheng, J. and Citovsky, V. 1996, Agrobacterium-plant cell DNA transport: have virulence proteins, will travel, Plant Cell, 8, 1699-1710.
9. Tanaka, N., Matsumoto, T., and Oka, A. 1993, Molecular analysis of T-DNA region on the root inducing plasmid (Ri) in a mikimopine type Agrobacterium rhizogenes strain 1724, Ann. Phytopath. Soc. Jpn., 59, 155-162.
10. Hattori, Y., Suzuki, K., Uraji, M., Ohta, N., Katoh, A., and Yoshida K. 1997, Genome structure of pTi-SAKURA (I): strategy for DNA sequencing of a Japanese cherry-Ti plasmid, Nucl. Acids Symp., 37, 159-160.
11. Shiomi, T., Shirakata, T., Takeuchi, A., Oizumi, T., and Uematsu, S. 1987, Hairy root of melon caused by Agrobacterium rhizogenes biovar 1, Ann. Phytopath. Soc. Jpn., 53, 454-459.
12. Tanaka, N. and Oka, A. 1994b, Restriction endonuclease map of the root-inducing plasmid (pRi1724) of Agrobacterium rhizogenes strain MAFF03-1724, Biosci. Biotech. Biochem., 58, 297-299.
13. Freiberg, C., Fellay, R., Bairoch, A., Broughton, W. J., Rosenthal, A., and Perret, X. 1997, Molecular basis of symbiosis between Rhizobium and legumes, Nature, 387, 394-401.
14. Huffman, G. A., White, F. F., Gordon, M. P., and Nester, E. W. 1984, Hairy-root-inducing plasmid: physical map and homology to tumor-inducing plasmids, J. Bacteriol., 157, 269-276.
15. Jumas-Bilak, E., Michaux-Charachon, S., Bourg, G., Ramuz, M., and Allardet-Servent, A. 1998, Unconventional genomic organization in the alpha subgroup of the Proteobacteria, J. Bacteriol., 180, 2749-2755.
16. Powell, G. K., Hommes, N. G., Kuo, J., Castle, L. A., and Moriss, R. O. 1988, Inducible expression of cytokinin biosynthesis in Agrobacterium tumefaciens by plant phenolics, Mol. Plant Microbe Int., 1, 235-242.
17. Regier, D. A., Akiyoshi, D. E., and Gordon, M. P. 1989, Nucleotide sequence of the tzs gene from Agrobacterium rhizogenes strain A4, Nucl. Acids Res., 17, 8885.
18. Aoyama, T., Takanami, M., and Oka, A. 1989, Signal structure for transcriptional activation in the upstream regions of virulence genes on the hairy-root-inducing plasmid A4, Nucl. Acids Res., 17, 8711-8725.
19. Lyi, S. M., Jafri, S., and Winans, S. C. 1999, Mannopinic acid and agropinic acid catabolism region of the octopine-type Ti plasmid, Mol. Microbiol., 31, 339-347.
20. Dessaux, Y., Petit, A., and Tempé, J. 1992, In: Verma, D. P. S. (ed) Molecular Signals in Plant-Microbe Communications, CRC Press, Boca Raton, pp. 109-136.
21. Kim, K.-S. and Farrand, S. K. 1997, Characterization of the acc operon from the nopaline-type Ti plasmid pTiC58, which encodes utilization of agrocinopines A and B and susceptibility to agrocin 84, J. Bacteriol., 179, 7559-7572.
22. Kim, K.-S., Sackett, R. L., and Farrand, S. K. 1998, Gen-Bank direct submission, accession number U60011.
23. Fuqua, C. and Winans, S. C. 1996, Localization of OccR-activated and TraR-activated promoters that express two ABC-type permeases and the traR gene of Ti plasmid pTiR10, Mol. Microbiol., 20, 1199-1210.
24. Zhu, J. and Winans, S. C. 1998, Activity of the quorom-sensing regulator of TraR of Agrobacterium tumefaciens is inhibited by a truncated, dominant defective TraR-like protein, Mol. Microbiol., 27, 289-297.
25. Oger, P., Kim, K.-S., Sackett, R. L., Piper, K. R., and Farrand, S. K., 1998, Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer, Mol. Microbiol., 27, 277-288.