Identification of mammalian-like purple acid phosphatases in a wide range of plants

Gene

Volumn 250, Issue 1-2, 2000, Pages 117-125

  Schenk, G ^a   Guddat, L W ^a   Ge, Y ^a   Carrington, L E ^a   Hume, D A ^a   Hamilton, S ^a   De Jersey, J ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Binuclear metal centre; Fenton like reaction; Homology modelling; Phosphate acquisition; Phylogenetics

Indexed keywords

ACID PHOSPHATASE;

ARABIDOPSIS; ARTICLE; DNA SEQUENCE; ENZYME ANALYSIS; GENE SEQUENCE; GENETIC CONSERVATION; MOLECULAR CLONING; NONHUMAN; PHYTOCHEMISTRY; POTATO; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SOYBEAN;

ACID PHOSPHATASE; AMINO ACID SEQUENCE; ANIMALS; ARABIDOPSIS; CLONING, MOLECULAR; DATABASES, FACTUAL; DNA, COMPLEMENTARY; FABACEAE; GLYCOPROTEINS; MAMMALS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS; PLANTS, MEDICINAL; PROTEIN STRUCTURE, SECONDARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SOYBEANS; VEGETABLES;

ANIMALIA; ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); EMBRYOPHYTA; FUNGI; GLYCINE MAX; IPOMOEA BATATAS; MAMMALIA; PHASEOLUS VULGARIS; SOLANUM TUBEROSUM; SUS SCROFA;

EID: 0034732993     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00186-4     Document Type: Article

References (34)

1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
2. Beck J.L., McConaghie L.A., Summors A.C., Arnold W.N., de Jersey J., Zerner B. Properties of a purple acid phosphatase from red kidney bean: a zinc-iron metalloenzyme. Biochim. Biophys. Acta. 869:1986;61-68.
3. Beh C.T., Ferrari D.C., Chung M.A., McGhee J.D. An acid phosphatase as a biochemical marker for intestinal development in the nematode Caenorhabditis elegans. Dev. Biol. 147:1991;133-143.
4. Cassady A.I., King A.G., Cross N.C.P., Hume D.A. Isolation and characterization of the genes encoding mouse and human type-5 acid phosphatase. Gene. 130:1993;201-207.
5. Duff S.M., Sarath G., Plaxton W.C. The role of acid phosphatases in plant phosphorus metabolism. Physiol. Plant. 90:1994;791-800.
6. Durmus A., Eicken C., Sift B.H., Kratel A., Kappl R., Hüttermann J., Krebs B. The active site of purple acid phosphatase from sweet potatoes (Ipomoea batatas). Eur. J. Biochem. 260:1999;709-716.
7. Ek-Rylander B., Bill P., Norgård M., Nilsson S., Andersson G. Cloning, sequence and developmental expression of a type 5 tartrate-resistant acid phosphatase of rat bone. J. Biol. Chem. 266:1991;24684-24689.
8. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791.
9. Felsenstein, J., 1989. PHYLIP version 3.4, University of Washington, Seattle, WA, USA.
10. Guddat L.W., McAlpine A.S., Hume D.A., Hamilton S., de Jersey J., Martin J.L. Crystal structure of mammalian purple acid phosphatase. Structure. 7:1999;757-767.
11. Hayman A.R., Jones S.J., Boyde A., Foster D., Colledge W.H., Carlton M.B., Evans M.J., Cox T.M. Mice lacking tartrate-resistant acid phosphatase (Acp5) have disrupted endohondral ossification and mild osteoporosis. Development. 122:1996;3151-3162.
12. Hunt D.F., Yates J.R. III, Shabanowitz J., Zhu N.Z., Zirino T., Averill B.A., Daurat-Larroque S.T., Shewale J.G., Roberts R.M., Brew K. Sequence homology in the metalloproteins, purple acid phosphatase from beef spleen and uteroferrin from porcine uterus. Biochem. Biophys. Res. Commun. 144:1987;1154-1160.
13. Jameson B.A., Wolf H. The antigenic index: a novel algorithm for predicting antigenic determinants. Comput. Appl. Biosci. 4:1988;181-186.
14. Ketcham C.M., Roberts R.M., Simmen R.C.M., Nick H.S. Molecular cloning of the type 5, iron-containing, tartrate-resistant acid phosphatase from human placenta. J. Biol. Chem. 264:1989;557-563.
15. Kim S.R., Gynheung A. Isolation and characterisation of a pollen-specific cDNA clone from Easter lily. J. Plant Biol. 39:1996;197-202.
16. Klabunde T., Stahl B., Suerbaum H., Hahner S., Karas M., Hillenkamp F., Krebs B., Witzel H. The amino acid sequence of the red kidney bean Fe(III)-Zn(II) purple acid phosphatase - determination of the amino acid sequence by a combination of matrix-assisted laser desorption ionization mass spectrometry and automated Edman sequencing. Eur. J. Biochem. 226:1994;369-375.
17. Klabunde T., Sträter N., Krebs B., Witzel H. Structural relationship between the mammalian Fe(III)-Fe(II) and the Fe(III)-Zn(II) plant purple acid phosphatases. FEBS Lett. 367:1995;56-60.
18. Klabunde T., Sträter N., Fröhlich R., Witzel H., Krebs B. Mechanism of Fe(III)-Zn(II) purple acid phosphatase based on crystal structures. J. Mol. Biol. 259:1996;737-748.
19. Klabunde T., Krebs B. The dimetal center in purple acid phosphatases. Struct. Bond. 89:1997;177-198.
20. Kraulis P.J. MOLSCRIPT - a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:1991;946-950.
21. Kumar, S., Tamura, K., Nei, M., 1993. Molecular Evolutionary Genetics Analysis, version 1.0. Pennsylvania State University, University Park, PA, U.S.A.
22. Laskowski R.A., MacArthur M.W., Moss D.S., Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. 26:1993;283-291.
23. LeBansky B.R., McKnight T., Griffing L.R. Purification and characterization of a secreted purple phosphatase from soybean suspension culture. Plant Physiol. 99:1992;391-395.
24. Mullaney E.J., Daly C.B., Ehrlich K.C., Ullah A.H.J. The Aspergillus niger (ficuum) aphA gene encodes a pH 6.0-optimum acid phosphatase. Gene. 162:1995;117-121.
25. Mullaney E.J., Ullah A.H.J. Conservation of the active site motif in Aspergillus niger (ficuum) pH 6.0 optimum acid phosphatase and kidney bean purple acid phosphatase. Biochem. Biophys. Res. Commun. 243:1998;471-473.
26. Nuttleman P.R., Roberts R.M. Transfer of iron from uteroferrin (purple acid phosphatase) to transferrin related to acid phosphatase activity. J. Biol. Chem. 265:1990;12192-12199.
27. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
28. Sanger F., Nicklen S., Coulson A.R. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
29. Sarkar A., Caddick M.X., Bignell E., Tiburn J., Arst H.N.J. Regulation of gene expression by ambient pH in Aspergillus: genes expressed at acid pH. Biochem. Soc. Trans. 24:1996;360-363.
30. Schenk G., Ge Y., Carrington L.E., Wynne C.J., Searle I.R., Carroll B.J., Hamilton S., de Jersey J. Binuclear metal centres in plant purple acid phosphatases: Fe-Mn in sweet potato and Fe-Zn in soybean. Arch. Biochem. Biophys. 370:1999;183-189.
31. Sibille J.C., Doi K., Aisen P. Hydroxyl radical formation and iron-binding proteins. J. Biol. Chem. 262:1987;59-62.
32. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
33. Ullah A.H.J., Cummins B.J. Aspergillus ficuum extracellular pH 6.0 optimum acid phosphatase: purification, N-terminal amino acid sequence, and biochemical characterisation. Prep. Biochem. 18:1988;37-65.
34. Vriend G. WHAT IF: A molecular modeling and drug design program. J. Mol. Graph. 8:1990;52-56.