Hydration dynamics of the collagen triple helix by NMR

Journal of Molecular Biology

Volumn 300, Issue 5, 2000, Pages 1041-1048

  Melacini, Giuseppe ^a,b   Bonvin, Alexandre M J J ^a   Goodman, Murray ^b   Boelens, Rolf ^a   Kaptein, Robert ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Chemical exchange; Collagen; Hydration; NMR; NOE

Indexed keywords

COLLAGEN;

ARTICLE; EXPERIMENTAL MODEL; HYDRATION; NUCLEAR MAGNETIC RESONANCE; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; PROTEIN STABILITY; PROTEIN STRUCTURE; REACTION TIME; SOLVATION; TRIPLE HELIX;

EID: 0034725529     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3919     Document Type: Article

References (72)

1. Crystal and molecular structure of a collagen-like peptide at 1.9 Å resolution
2. Hydration structure of a collagen peptide
3. Hydration structure of fibrous macromolecules
4. The thermal transition of a non-hydroxylated form of collagen. Evidence for a role for hydroxyproline in stabilizing the triple-helix of collagen
5. A study of protein-water exchange through the off-resonance ROESY experiment: Application to the DNA-binding domain of AlcR
6. NMR and CD studies of triple-helical peptides
7. Water self-diffusion model for protein-water NMR cross relaxation
8. Variation of longitudinal acoustic velocity at gigahertz frequencies with water content in rat-tail tendon fibers
9. New one-dimensional selective NMR experiments in aqueous solutions recorded with pulsed field gradients
10. Efficient multiple-solvent suppression for the study of the interactions of organic solvents with biomolecules
11. New pulsed field gradient NMR experiments for the detection of bound water in proteins
12. NMRPipe: A multidimensional spectral processing system based on UNIX pipes
13. Protein hydration dynamics in aqueous solution
14. Kinetics of DNA hydration
15. Simple solution to decrease angular dispersion in off-resonance experiments
16. Off-resonance ROESY for the study of dynamic processes
17. Improved versions of off-resonance ROESY
18. Cloning of a novel bacteria-binding receptor structurally related to scavenger receptors and expressed in a subset of macrophages
19. The triple helix-coil conversion of collagen-like polytripeptides in aqueous and non-aqueous solvents. Comparison of the thermodynamic parameters and the binding of water to (L-Pro-L-Pro-Gly)(n) and (L-Pro-L-Hyp-Gly)(n)
20. Acetyl-terminated and template-assembled collagen-based polypeptides composed of Gly-Pro-Hyp sequences. 2. Synthesis and conformational analysis by circular dichroism, ultraviolet absorbance, and optical rotation
21. Elimination of chemical-exchange-mediated spin diffusion from exchange spectra of macromolecules - Exchange-decoupled NOESY (XD-NOESY)
22. Chain conformation in the collagen molecule
23. The molecular details of collagen hydration
24. Molecular dynamics simulation of hydration in myoglobin
25. Anisotropy of NMR properties of tissues
26. The structure of water absorbed in collagen
27. Code for collagen's stability deciphered
28. Collectins soluble proteins containing collagenous regions and lectin domains and their roles in innate immunity
29. Application of phase-modulated CLEAN chemical EXchange spectroscopy (CLEANEX-PM) to detect water-protein proton exchange and intermolecular NOEs
30. Extracellular matrix. 1: Fibril-forming collagens
31. Pulsed field gradient NMR and nuclear magnetic relaxation studies of water mobility in hydrated collagen II
32. Type I macrophage scavenger receptor contains alpha-helical and collagen-like coiled coils
33. A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules
34. X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly)
35. Two-dimensional NMR assignments and conformation of (Pro-Hyp-Gly)10 and a designed collagen triple-helical peptide
36. Proton exchange rates from amino acid side chains - Implications for image contrast
37. NMR spectroscopy of hydroxyl protons in aqueous solutions of peptides and proteins
38. Two-dimensional exchange spectroscopy of proteins
39. Rapid recording of 2D NMR spectra without phase cycling - Application to the study of hydrogen exchange in proteins
40. Elimination of multi-step spin diffusion effects in 2D-NOE spectroscopy of nucleic acids
41. Nuclear magnetic resonance study of the proton transfer in water
42. Acetyl-terminated and template-assembled collagen-based polypeptides composed of Gly-Pro-Hyp sequences. 3. Conformational analysis by 1H-NMR and molecular modeling studies
43. Improved method for the stereospecific 1H-NMR assignments in collagen-like triple-helices
44. Editing of chemical exchange-relayed NOEs in NMR experiments for the observation of protein-water interactions
45. Water-macromolecule interactions by NMR: A quadrature-free constant-time approach
46. Separation of intramolecular NOE and exchange peaks in water exchange spectroscopy using spin-echo filters
47. Protein folding and association: Insights from the interfacial and thermodynamic
48. Interaction of water with native collagen
49. Accounting for spin-diffusion in the analysis of 2D NOE data
50. NMR studies of water bound to biological molecules
51. Protein hydration in aqueous solution
52. Proton exchange with internal water molecules in the protein bpti in aqueous solution
53. Polypeptide hydration in mixed solvents at low temperatures
54. Determination of the residence time of water molecules hydrating B'-DNA and B-DNA, by one-dimensional zero-enhancement nuclear Overhauser effect spectroscopy
55. Structure and dynamics of water in tendon from NMR relaxation measurements
56. Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
57. Stability of proteins
58. A hypothesis on the role of hydroxyproline in stabilizing collagen structure
59. NMR study of collagen-water interactions
60. The molecular structure of collagen
61. Gradient-tailored water suppression for H-1-H-15 HSQC experiments optimized to retain full sensitivity
62. Water molecules in DNA recognition I: Hydration lifetimes of trp operator DNA in solution measured by NMR spectroscopy
63. Role of hydroxylproline in the stabilization of the collagen molecule via water molecules
64. Water-protein interactions: Theory and experiment
65. Chemically relayed nuclear Overhauser effect. Connectivities between resonances of non-exchangeable protons and water
66. Magnetization exchange network editing - Mathematical principles and experimental demonstration
67. Isolation of selected exchange processes in nuclear magnetic resonance