Quadruplet codons: Implications for code expansion and the specification of translation step size

Journal of Molecular Biology

Volumn 298, Issue 2, 2000, Pages 195-209

  Moore, Barry ^a   Persson, Britt C ^a   Nelson, Chad C ^a   Gesteland, Raymond F ^a   Atkins, John F ^a  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

Anticodon; Code expansion; Frameshift suppressors; Frameshifting; Quadruplet codon

Indexed keywords

AMINO ACID; DNA; LEUCINE; MESSENGER RNA; NUCLEOTIDE; PURINE; TRANSFER RNA;

ANTICODON; ARTICLE; CODON; DNA SEQUENCE; ESCHERICHIA COLI; GENETIC CODE; NONHUMAN; PRIORITY JOURNAL; RNA TRANSLATION;

ESCHERICHIA COLI;

EID: 0034724561     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3658     Document Type: Article

References (53)

1. The uridine in 'U-turn': Contributions to tRNA-ribosomal binding
2. Poking a hole in the sanctity of the triplet code: Inferences for framing
3. The context effect does not require a fourth base pair
4. Uridine-33 in yeast tRNA is not essential for amber suppression
5. The selenocysteine-inserting tRNA species: Structure and function
6. Did the RNA world exploit an expanded genetic alphabet?
7. Suppressor sufl: A novel type of tRNA mutant that induces translational frameshifting
8. Residue-specific bioincorporation of non-natural, biologically active amino acids into proteins as possible drug carriers: Structure and stability of the per-thiaproline mutant of annexin V
9. The crystal structure of an RNA oligomer incorporating tandem adenosine-inosine mismatches
10. Decoding with the A:I wobble pair is inefficient
11. Reading frame selection and transfer RNA anticodon loop stacking
12. The decoding region of 16 S RNA: A cross-linking study of the ribosomal A, P and E sites using tRNA derivatized at position 32 in the anticodon loop
13. How translational accuracy influences reading frame maintenance
14. Antisense RNA regulation in prokaryotes: Rapid RNA/RNA interaction facilitated by a general U-turn loop structure
15. Codon recognition during frameshift suppression in Saccharomyces cerevisiae
16. 19F nuclear magnetic resonance as a probe of anticodon structure in 5-fluorouracil-substituted Escherichia coli transfer RNA
17. Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs
18. Incorporation of two different nonnatural amino acids independently into a single protein through extension of the genetic code
19. Specificity of factor Xa in the cleavage of fusion proteins
20. Exploiting unassigned codons in Micrococcus luteus for tRNA-based amino acid mutagenesis
21. Mechanism of codon recognition by transfer studies with oligonucleotides larger than triplets
22. Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: Programmed efficiency of 50%
23. Assembly of the mitochondrial membrane system: Sequences of yeast mitochondrial valine and an unusual threonine tRNA gene
24. On the directional specificity of ribosome frameshifting at a 'hungry' codon
25. Progress toward the evolution of an organism with an expanded genetic code
26. Engineering a tRNA and aminoacyl-tRNA synthetase for the site-specific incorporation of unnatural amino acids into proteins in vivo
27. A highly efficient and robust cell-free protein synthesis system prepared from wheat embryos: Plants apparently contain a suicide system directed at ribosomes
28. Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as 'spacers' which do not require a specific sequence
29. Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes
30. Ribosomal-1 frameshifting during decoding of Bacillus subtilis cdd occurs at the sequence CGA AAG
31. Effects of surrounding sequence on the suppression of nonsense codons
32. Isolation and nucleotide sequence analysis of tRNA (Ala)GGC from Escherichia coli K-12
33. Anticodon shift in tRNA: A novel mechanism in missense and nonsense suppression
34. Synthesis and sequence-specific proteolysis of hybrid proteins produced in Escherichia coli
35. tRNA Imbalance promotes -1 frameshifting via near-cognate decoding
36. tRNA Hopping: Enhancement by an expanded anticodon
37. The Candida albicans CUG-decoding ser-tRNA has an atypical stem-loop structure
38. Context rules of rightward overlapping reading
39. The identity of the base following the stop codon determines the effciency of in vivo translational termination in Escherichia coli
40. Frameshift suppression: A nucleotide addition in the anticodon of a glycine transfer RNA
41. Suppressors of frameshift mutations in Salmonella typhimurium
42. SrA-mediated peptide tagging caused by rare codons and tRNA scarcity
43. An engineered Tetrahymena tRNA(Gln) for in vivo incorporation of unnatural amino acids into proteins by nonsense suppression
44. The non-standard genetic code of Candida spp.: An evolving genetic code or a novel mechanism for adaptation?
45. Nucleotide sequence of a yeast mitochondrial threonine-tRNA able to decode the C-U-N leucine codons
46. tRNA-tRNA Interactions within cellular ribosomes
47. Effect of release factor 1 on in vitro protein translation and the elaboration of proteins containing unnatural amino acids
48. Compilation of tRNA sequences and sequences from tRNA genes
49. 2(Pro) from Salmonella typhimurium induces suppression of frameshift mutations
50. Near-cognate peptidyl tRNAs promote programmed translational frameshifting in yeast
51. Translational frameshifting in the Escherichia coli dnaX gene in vitro
52. Externally suppressible +1 'glycine' frameshift: Possible quadruplet isomers for glycine and proline
53. Genetic implication for an interaction between release factor one and ribosomal protein L7/L12 in vivo