An approach to gene-specific transcription inhibition using oligonucleotides complementary to the template strand of the open complex

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 7, 2000, Pages 3136-3141

  Milne, Lisa ^a   Xu, Yue ^b   Perrin, David M ^c   Sigman, David S ^a,d  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b SCRIPPS RESEARCH INSTITUTE   (United States)

^c MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

1,10 PHENANTHROLINE COPPER; DOUBLE STRANDED DNA; NUCLEASE; OLIGORIBONUCLEOTIDE; RNA POLYMERASE; SINGLE STRANDED DNA;

ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; DNA TEMPLATE; ESCHERICHIA COLI; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; TRANSCRIPTION REGULATION;

ESCHERICHIA COLI; PROKARYOTA;

EID: 0034724416     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.7.3136     Document Type: Article

References (43)

1. Engel, J. D. & von Hipple, P. H. (1986) Annu. Rev. Biochem. 53, 389-446.
2. Chamberlin, M. J. (1993) Harvey Lectures (Wiley, New York), Vol. 88, pp. 1-21.
3. McClure, W. R. (1985) Annu. Rev. Biochem. 54, 171-204.
4. Cook, P. R. (1999) Science 284, 1790-1795.
5. Holstege, P. C., Fiedler, U. & Timmers, H. T. (1997) EMBO J. 16, 7468-7480.
6. Spassky, A. & Sigman, D. S. (1985) Biochemistry 24, 8050-8056.
7. Kuwabara, M. & Sigman, D. S. (1987) Biochemistry 26, 7234-7238.
8. Mazumder, A., Perrin, D. M., Watson, K. J. & Sigman, D. S. (1993) Proc. Natl. Acad. Sci. USA 90, 8140-8144.
9. Mazumder, A., Perrin, D. M., McMillin, D. & Sigman, D. S. (1994) Biochemistry 33, 2262-2268.
10. Perrin, D. M., Pearson, L., Mazumder, A. & Sigman, D. S. (1994) Gene 149, 173-178.
11. Perrin, D. M., Hoang, V. M., Xu, Y., Mazumder, A. & Sigman, D. S. (1996) Biochemistry 35, 5318-5326.
12. Thederahn, T., Spassky, A., Kuwabara, M. D. & Sigman, D. S. (1990) Biochem. Biophys. Res. Commun. 168, 756-762.
13. Zelenko, O., Gallagher, J., Xu, Y. & Sigman, D. S. (1998) Inorg. Chem. 37, 2198-2204.
14. Meijler, M. M., Zelenko, O. & Sigman, D. S. (1997) J. Am. Chem. Soc. 119, 1135-1136.
15. Sasse-Dwight, S. & Gralla, J. D. (1989) J. Biol. Chem. 264, 8074-8081.
16. Kirkegaard, K., Buc, H., Spassky, A. & Wang, J. C. (1983) Proc. Natl. Acad. Sci. USA 80, 2544-2548.
17. Gallagher, J., Perrin, D. M., Chan, L., Kwong, E. & Sigman, D. S. (1996) Chem. Biol. 3, 793-746.
18. Helene, C. (1998) Nature (London) 391, 436-438.
19. Wittung-Stafshede, P. (1998) Science 281, 657-658.
20. Good, L. & Nielsen, P. E. (1998) Proc. Natl. Acad. Sci. USA 95, 2073-2076.
21. Ma, L. & Calvo, F. (1996) Fundam. Clin. Pharmacol. 10, 97-115.
22. Ulhmann, E. & Peyman, A. (1990) Chem. Rev. 90, 543-584.
23. Thuong, N. T. & Helene, C. (1993) Angew. Chem. Int. Engl. Ed. 32, 666-690.
24. Moser, H. E. & Dervan, P. B. (1987) Science 238, 645-650.
25. Dickinson, L. A., Gulizia, R. J., Trauger, J. W., Baird, E. E., Mosier, D. E., Gottesfeld, J. M. & Dervan, P. B. (1998) Proc. Natl. Acad. Sci. USA 95, 12890-12895.
26. Perrin, D. M., Mazumder, A., Sadeghi, F. & Sigman, D. S. (1994) Biochemistry 33, 3848-3854.
27. Grachev, M. A., Zaychikov, E. F., Ivanova, E. M., Komarova, N. I., Kutyavin, I. V., Sidelnikova, N. P. & Frolova, I. P. (1984) Nucleic Acids Res. 12, 8509-8524.
28. Sproat, B. S., Lamond, A. L, Beijer, B., Neuner, P. & Ryder, U. (1989) Nucleic Acids Res. 17, 3373-3385.
29. Axelrod, V. D. & Kramer, F. R. (1985) Biochemistry 24, 5716-5723.
30. Perrin, D. M., Chen, C.-H. B., Xu, Y., Pearson, L. & Sigman, D. S. (1997) J. Am. Chem. Soc. 119, 5746-5747.
31. Gunsalus, R. P., Zurawski, G. & Yanofsky, C. (1979) J. Bacteriol. 140, 106-113.
32. Chen, C.-H. B. & Sigman, D. S. (1986) Proc. Natl. Acad. Sci. USA 83, 7147-7151.
33. Chu, B. C. F., Wahl, G. M. & Orgel, L. E. (1983) Nucleic Acids Res. 11, 6513-6529.
34. McGee, D. P. C., Vargeese, C., Zhai, Y. S., Kirschenheuter, G. P., Settle, A., Siedem, C. R. & Pieken, W. A. (1995) Nucleosides Nucleotides 14, 1329-1339.
35. McGee, D. P. C., Sebesta, D. P., Orourke, S. S., Martinez, R. L., Jung, M. E. & Pieken, W. A. (1996) Tetrahedron Lett. 37, 1995-1998.
36. Sproat, B., Beijer, B. & Ipibanen, A. (1990) Nucleic Acids Res. 18, 41-53.
37. Maxam, A. M. & Gilbert, W. (1980) Methods Enzymol. 65, 499-560.
38. Izban, M. G., Parsons, M. A. & Sinden, R. R. (1998) J. Biol. Chem. 273, 27009-27016.
39. Chen, C.-H. B., Gorin, M. & Sigman, D. S. (1993) Proc. Natl. Acad. Sci. USA 90, 4206-4210.
40. Siebenlist, U. (1979) Nature (London) 279, 651-652.
41. Sigman, D. S. & Chen, C.-H. B. (1990) Annu. Rev. Biochem. 59, 207-236.
42. Sigman, D. S., Mazumder, A. & Perrin, D. M. (1993) Chem. Rev. 93, 2295-2316.
43. Marr, M. T. & Roberts, J. W. (1997) Science 276, 1258-1260.