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Volumn 79, Issue 3, 2000, Pages 281-298

Protein folding and stability investigated by fluorescence, circular dichroism (CD), and nuclear magnetic resonance (NMR) spectroscopy: The flavodoxin story

Author keywords

Circular dichroism; Co operative and non co operative transition; Equilibrium unfolding; Flavodoxin; Fluorescence; NMR; Three state model

Indexed keywords

APOFLAVODOXIN; APOPROTEIN; BACTERIAL PROTEIN; CUTINASE; FLAVINE MONONUCLEOTIDE; FLAVODOXIN; HYDROGEN; UNCLASSIFIED DRUG;

EID: 0034717064     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1656(00)00244-3     Document Type: Conference Paper
Times cited : (59)

References (58)
  • 1
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • Anfinsen C.B. Principles that govern the folding of protein chains. Science. 181:1973;223-230.
    • (1973) Science , vol.181 , pp. 223-230
    • Anfinsen, C.B.1
  • 2
    • 67349189383 scopus 로고
    • The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain
    • Anfinsen C.B., Haber E., Sela M., White F.H. Jr The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain. Proc. Natl. Acad. Sci. 47:1961;1309-1314.
    • (1961) Proc. Natl. Acad. Sci. , vol.47 , pp. 1309-1314
    • Anfinsen, C.B.1    Haber, E.2    Sela, M.3    White F.H., Jr.4
  • 4
    • 0033555681 scopus 로고    scopus 로고
    • A protein folding intermediate of ribonuclease T1 characterized at high resolution by 1D and 2D real-time NMR spectroscopy
    • Balbach J., Steegborn C., Schindler T., Schmid F.X. A protein folding intermediate of ribonuclease T1 characterized at high resolution by 1D and 2D real-time NMR spectroscopy. J. Mol. Biol. 285:1999;829-842.
    • (1999) J. Mol. Biol. , vol.285 , pp. 829-842
    • Balbach, J.1    Steegborn, C.2    Schindler, T.3    Schmid, F.X.4
  • 5
    • 0032972986 scopus 로고    scopus 로고
    • Is protein folding hierarchic? I: Local structure and peptide folding
    • Baldwin R.L., Rose G.D. Is protein folding hierarchic? I: local structure and peptide folding. Trends Biochem. Sci. 24:1999a;26-33.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 26-33
    • Baldwin, R.L.1    Rose, G.D.2
  • 6
    • 0033080081 scopus 로고    scopus 로고
    • Is protein folding hierarchic? II: Folding intermediates and transition states
    • Baldwin R.L., Rose G.D. Is protein folding hierarchic? II: folding intermediates and transition states. Trends Biochem. Sci. 24:1999b;77-83.
    • (1999) Trends Biochem. Sci. , vol.24 , pp. 77-83
    • Baldwin, R.L.1    Rose, G.D.2
  • 7
    • 0032561384 scopus 로고    scopus 로고
    • A glimpse of the holy grail?
    • Berendsen H.J.C. A glimpse of the holy grail? Science. 282:1998;642-643.
    • (1998) Science , vol.282 , pp. 642-643
    • Berendsen, H.J.C.1
  • 8
    • 0030983386 scopus 로고    scopus 로고
    • Population statistics of protein structures: Lessons from structural classifications
    • Brenner S.E. Population statistics of protein structures: lessons from structural classifications. Curr. Opin. Struct. Biol. 7:1997;369-376.
    • (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 369-376
    • Brenner, S.E.1
  • 10
    • 0004260243 scopus 로고
    • New York: W.H. Freeman and Company
    • Creighton T.E. Protein Folding. 1992;W.H. Freeman and Company, New York.
    • (1992) Protein Folding
    • Creighton, T.E.1
  • 11
    • 0002393358 scopus 로고
    • The protein folding problem
    • R.H. Pain. Oxford, UK: IRL Press
    • Creighton T.E. The protein folding problem. Pain R.H. Mechanisms of Protein Folding. 1994;1-25 IRL Press, Oxford, UK.
    • (1994) Mechanisms of Protein Folding , pp. 1-25
    • Creighton, T.E.1
  • 12
    • 1842298212 scopus 로고    scopus 로고
    • From Levinthal to pathways to funnels
    • Dill K.A., Chan H.S. From Levinthal to pathways to funnels. Nature Struct. Biol. 4:1997;10-19.
    • (1997) Nature Struct. Biol. , vol.4 , pp. 10-19
    • Dill, K.A.1    Chan, H.S.2
  • 13
    • 0032993447 scopus 로고    scopus 로고
    • Polymer principles and protein folding
    • Dill K.A. Polymer principles and protein folding. Protein Sci. 8(6):1999;1166-1180.
    • (1999) Protein Sci. , vol.8 , Issue.6 , pp. 1166-1180
    • Dill, K.A.1
  • 14
    • 0028053187 scopus 로고
    • Understanding how proteins fold-the lysozyme story so far
    • Dobson C.M., Evans P.A., Radford S.E. Understanding how proteins fold-the lysozyme story so far. Trends Biochem. Sci. 19:1994;31-37.
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 31-37
    • Dobson, C.M.1    Evans, P.A.2    Radford, S.E.3
  • 15
    • 0032842870 scopus 로고    scopus 로고
    • The fundamentals of protein folding: Bringing together theory and experiment
    • Dobson C.M., Karplus M. The fundamentals of protein folding: bringing together theory and experiment. Curr. Opin. Struct. Biol. 9:1999;92-101.
    • (1999) Curr. Opin. Struct. Biol. , vol.9 , pp. 92-101
    • Dobson, C.M.1    Karplus, M.2
  • 16
    • 0032561237 scopus 로고    scopus 로고
    • Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution
    • Duan Y., Kollman P.A. Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. Science. 282:1998;740-744.
    • (1998) Science , vol.282 , pp. 740-744
    • Duan, Y.1    Kollman, P.A.2
  • 17
    • 0020855355 scopus 로고
    • Hydrogen exchange and structural dynamics of proteins and nucleic acids
    • Englander S.W., Kallenbach N.R. Hydrogen exchange and structural dynamics of proteins and nucleic acids. Quart. Rev. Biophys. 16:1984;521-655.
    • (1984) Quart. Rev. Biophys. , vol.16 , pp. 521-655
    • Englander, S.W.1    Kallenbach, N.R.2
  • 19
    • 0031043161 scopus 로고    scopus 로고
    • Nucleation mechanisms in protein folding
    • Fersht A.R. Nucleation mechanisms in protein folding. Curr. Opin. Struct. Biol. 7:1997;3-9.
    • (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 3-9
    • Fersht, A.R.1
  • 22
    • 0032876680 scopus 로고    scopus 로고
    • Protein conformational stabilities can be determined from hydrogen exchange rates
    • Huyghues-Despointes B.M.P., Scholtz J.M., Pace C.N. Protein conformational stabilities can be determined from hydrogen exchange rates. Nat. Struct. Biol. 6:1999;910-912.
    • (1999) Nat. Struct. Biol. , vol.6 , pp. 910-912
    • Huyghues-Despointes, B.M.P.1    Scholtz, J.M.2    Pace, C.N.3
  • 24
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis P.J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Cryst. 24:1991;946-950.
    • (1991) J. Appl. Cryst. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 25
    • 0031583471 scopus 로고    scopus 로고
    • Amide hydrogen exchange and internal dynamics the chemotactic protein Chey from Escherichia coli
    • Lacroix E., Bruix M., López-Hernández E., Serrano L., Rico M. Amide hydrogen exchange and internal dynamics the chemotactic protein Chey from Escherichia coli. J. Mol. Biol. 271:1997;472-487.
    • (1997) J. Mol. Biol. , vol.271 , pp. 472-487
    • Lacroix, E.1    Bruix, M.2    López-Hernández, E.3    Serrano, L.4    Rico, M.5
  • 26
    • 0002006297 scopus 로고
    • Are there pathways for protein folding?
    • Levinthal C. Are there pathways for protein folding? J. Chim. Phys. 65:1968;44-45.
    • (1968) J. Chim. Phys. , vol.65 , pp. 44-45
    • Levinthal, C.1
  • 28
    • 2642674396 scopus 로고    scopus 로고
    • Cooperative stabilization of a molten globule apoflavodoxin fragment
    • Maldonado S., Ángeles Jimenéz M., Langdon G.M., Sancho J. Cooperative stabilization of a molten globule apoflavodoxin fragment. Biochemistry. 37:1998;10589-10596.
    • (1998) Biochemistry , vol.37 , pp. 10589-10596
    • Maldonado, S.1    Ángeles Jimenéz, M.2    Langdon, G.M.3    Sancho, J.4
  • 29
    • 0024358426 scopus 로고
    • Mapping the transition state and pathway of protein folding by protein engineering
    • Matouschek A., Kellis Jr. J.T., Serrano L., Fersht A.R. Mapping the transition state and pathway of protein folding by protein engineering. Nature. 340:1989;122-126.
    • (1989) Nature , vol.340 , pp. 122-126
    • Matouschek, A.1    Kellis J.T., Jr.2    Serrano, L.3    Fersht, A.R.4
  • 31
    • 0028593509 scopus 로고
    • Protein superfamilies and domain superfolds
    • Orengo C.A., Jones D.T., Thornton J.M. Protein superfamilies and domain superfolds. Nature. 372:1994;631-634.
    • (1994) Nature , vol.372 , pp. 631-634
    • Orengo, C.A.1    Jones, D.T.2    Thornton, J.M.3
  • 32
    • 0022555885 scopus 로고
    • Determination and analysis of urea and guanidine hydrochloride denaturation curves
    • Pace C.N. Determination and analysis of urea and guanidine hydrochloride denaturation curves. Meth. Enzym. 131:1986;266-280.
    • (1986) Meth. Enzym. , vol.131 , pp. 266-280
    • Pace, C.N.1
  • 34
    • 0002940127 scopus 로고
    • The molten globule state
    • T.E. Creighton. New York: W.H. Freeman and Company
    • Ptitsyn O.B. The molten globule state. Creighton T.E. Protein Folding. 1992;243-300 W.H. Freeman and Company, New York.
    • (1992) Protein Folding , pp. 243-300
    • Ptitsyn, O.B.1
  • 35
    • 0031055942 scopus 로고    scopus 로고
    • Kinetic role of early intermediates in protein folding
    • Roder H., Colón W. Kinetic role of early intermediates in protein folding. Curr. Opin. Struct. Biol. 7:1997;15-28.
    • (1997) Curr. Opin. Struct. Biol. , vol.7 , pp. 15-28
    • Roder, H.1    Colón, W.2
  • 36
    • 0023705432 scopus 로고
    • Structural characterization of folding intermediates in cytocrome c by H-exchange labelling and proton NMR
    • Roder H., Elöve G.A., Englander S.W. Structural characterization of folding intermediates in cytocrome c by H-exchange labelling and proton NMR. Nature. 335:1988;700-704.
    • (1988) Nature , vol.335 , pp. 700-704
    • Roder, H.1    Elöve, G.A.2    Englander, S.W.3
  • 37
    • 0023697408 scopus 로고
    • Unfolding free energy changes determined by the linear extrapolation method. 1: Unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants
    • Santoro M.M., Bolen D.W. Unfolding free energy changes determined by the linear extrapolation method. 1: unfolding of phenylmethanesulfonyl α-chymotrypsin using different denaturants. Biochemistry. 27:1988;8063-8068.
    • (1988) Biochemistry , vol.27 , pp. 8063-8068
    • Santoro, M.M.1    Bolen, D.W.2
  • 38
    • 0030768045 scopus 로고    scopus 로고
    • A residue specific NMR view of the non cooperative unfolding of a molten globule
    • Schulman B.A., Kim P.S., Dobson C.M., Redfield C. A residue specific NMR view of the non cooperative unfolding of a molten globule. Nat. Struct. Biol. 4:1997;630-634.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 630-634
    • Schulman, B.A.1    Kim, P.S.2    Dobson, C.M.3    Redfield, C.4
  • 39
    • 0029961647 scopus 로고    scopus 로고
    • Structural analysis of non-native states of proteins by NMR methods
    • Shortle D.R. Structural analysis of non-native states of proteins by NMR methods. Curr. Opin. Struct. Biol. 6:1996;24-30.
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 24-30
    • Shortle, D.R.1
  • 41
    • 0030060586 scopus 로고    scopus 로고
    • Redox properties of wild-type, Cys69Ala, and Cys69Ser A. vinelandii flavodoxin II as measured by cyclic voltammetry and EPR spectroscopy
    • Steensma E., Heering H.A., Hagen W.R., van Mierlo C.P.M. Redox properties of wild-type, Cys69Ala, and Cys69Ser A. vinelandii flavodoxin II as measured by cyclic voltammetry and EPR spectroscopy. Eur. J. Biochem. 235:1996;167-172.
    • (1996) Eur. J. Biochem. , vol.235 , pp. 167-172
    • Steensma, E.1    Heering, H.A.2    Hagen, W.R.3    Van Mierlo, C.P.M.4
  • 42
    • 0031952923 scopus 로고    scopus 로고
    • Apparent local stability of the secondary structure of Azotobacter vinelandii holoflavodoxin II as probed by hydrogen exchange: Implications for redox potential regulation and flavodoxin folding
    • Steensma E., Nijman M.J.M., Bollen Y.J.M. et al. Apparent local stability of the secondary structure of Azotobacter vinelandii holoflavodoxin II as probed by hydrogen exchange: implications for redox potential regulation and flavodoxin folding. Protein Sci. 7:1998;306-317.
    • (1998) Protein Sci. , vol.7 , pp. 306-317
    • Steensma, E.1    Nijman, M.J.M.2    Bollen, Y.J.M.3
  • 43
    • 0032566696 scopus 로고    scopus 로고
    • Structural characterisation of apoflavodoxin shows that the location of the most stable nucleus differs among proteins with a flavodoxin-like topology
    • Steensma E., van Mierlo C.P.M. Structural characterisation of apoflavodoxin shows that the location of the most stable nucleus differs among proteins with a flavodoxin-like topology. J. Mol. Biol. 282:1998;653-666.
    • (1998) J. Mol. Biol. , vol.282 , pp. 653-666
    • Steensma, E.1    Van Mierlo, C.P.M.2
  • 44
    • 0017382179 scopus 로고
    • Complete amino acid sequence of azotoflavin, a flavodoxin from Azotobacter vinelandii
    • Tanaka M., Haniu M., Yasunobu K.T., Yoch D.C. Complete amino acid sequence of azotoflavin, a flavodoxin from Azotobacter vinelandii. Biochemistry. 16:1977;3525-3537.
    • (1977) Biochemistry , vol.16 , pp. 3525-3537
    • Tanaka, M.1    Haniu, M.2    Yasunobu, K.T.3    Yoch, D.C.4
  • 45
    • 0002432883 scopus 로고
    • Protein folding in biotechnology
    • R.H. Pain. Oxford: IRL Press
    • Thatcher D.R., Hitchcock A. Protein folding in biotechnology. Pain R.H. Mechanisms of Protein Folding. 1994;229-261 IRL Press, Oxford.
    • (1994) Mechanisms of Protein Folding , pp. 229-261
    • Thatcher, D.R.1    Hitchcock, A.2
  • 46
    • 0343230593 scopus 로고
    • Flavodoxins and nitrogen fixation-structure, electrochemistry and post-translational modification by coenzyme A
    • K. Yagi. Berlin: Walter de Gruyter & Co
    • Thorneley R.N.F., Ashby G.A., Drummond M.H. et al. Flavodoxins and nitrogen fixation-structure, electrochemistry and post-translational modification by coenzyme A. Yagi K. Flavins and Flavoproteins. 1994;343-354 Walter de Gruyter & Co, Berlin.
    • (1994) Flavins and Flavoproteins , pp. 343-354
    • Thorneley, R.N.F.1    Ashby, G.A.2    Drummond, M.H.3
  • 47
    • 0023758305 scopus 로고
    • NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A
    • Udgaonkar J.B., Baldwin R.L. NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A. Nature. 335:1988;694-699.
    • (1988) Nature , vol.335 , pp. 694-699
    • Udgaonkar, J.B.1    Baldwin, R.L.2
  • 49
    • 0026736195 scopus 로고
    • The partially folded conformation of the Cys30-Cys51 intermediate in the disulphide folding pathway of bovine pancreatic trypsin inhibitor
    • van Mierlo C.P.M., Darby N.J., Creighton T.E. The partially folded conformation of the Cys30-Cys51 intermediate in the disulphide folding pathway of bovine pancreatic trypsin inhibitor. Proc. Natl. Acad. Sci. USA. 89:1992a;6775-6779.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 6775-6779
    • Van Mierlo, C.P.M.1    Darby, N.J.2    Creighton, T.E.3
  • 52
    • 0032868613 scopus 로고    scopus 로고
    • Stabilisation centres differ between structurally homologous proteins as shown by NMR spectroscopy
    • van Mierlo C.P.M., Steensma E. Stabilisation centres differ between structurally homologous proteins as shown by NMR spectroscopy. J. Mol. Cat. B: Enz. 7:1999;147-156.
    • (1999) J. Mol. Cat. B: Enz. , vol.7 , pp. 147-156
    • Van Mierlo, C.P.M.1    Steensma, E.2
  • 54
    • 0342795995 scopus 로고    scopus 로고
    • NMR studies on apoflavodoxin II from Azotobacter vinelandii
    • K.J. Stevenson, V. Massey, & C.H. Williams Jr.. Calgary, Alberta, Canada: University of Calgary Press
    • van Mierlo C.P.M., Steensma E., van Dongen W.M.A.M., van Berkel W.J.H. NMR studies on apoflavodoxin II from Azotobacter vinelandii. Stevenson K.J., Massey V., Williams Jr. C.H. Flavins and Flavoproteins 1996. 1997;449-452 University of Calgary Press, Calgary, Alberta, Canada.
    • (1997) Flavins and Flavoproteins 1996 , pp. 449-452
    • Van Mierlo, C.P.M.1    Steensma, E.2    Van Dongen, W.M.A.M.3    Van Berkel, W.J.H.4
  • 55
    • 0031792027 scopus 로고    scopus 로고
    • The equilibrium unfolding of Azotobacter vinelandii apoflavodoxin II occurs via a relatively stable folding intermediate
    • van Mierlo C.P.M., van Dongen W.M.A.M., Vergeldt F., van Berkel W.J.H., Steensma E. The equilibrium unfolding of Azotobacter vinelandii apoflavodoxin II occurs via a relatively stable folding intermediate. Protein Sci. 7:1998;2331-2344.
    • (1998) Protein Sci. , vol.7 , pp. 2331-2344
    • Van Mierlo, C.P.M.1    Van Dongen, W.M.A.M.2    Vergeldt, F.3    Van Berkel, W.J.H.4    Steensma, E.5
  • 58
    • 0027361710 scopus 로고
    • Is the slow-exchange core the protein folding core?
    • Woodward C. Is the slow-exchange core the protein folding core? Trends Biochem. Sci. 18:1993;359-360.
    • (1993) Trends Biochem. Sci. , vol.18 , pp. 359-360
    • Woodward, C.1


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