Selective binding of hepatitis C virus core protein to synthetic oligonucleotides corresponding to the 5' untranslated region of the viral genome

Virology

Volumn 270, Issue 1, 2000, Pages 229-236

  Tanaka, Yoshinobu ^a,b   Shimoike, Takashi ^a   Ishii, Koji ^a   Suzuki, Ryosuke ^a   Suzuki, Tetsuro ^a   Ushijima, Hiroshi ^b   Matsuura, Yoshiharu ^a   Miyamura, Tatsuo ^a  

^a NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; CORE PROTEIN; OLIGONUCLEOTIDE; VIRUS PROTEIN; VIRUS RNA;

ARTICLE; HEPATITIS C VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN RNA BINDING; RNA VIRUS; VIRUS GENOME; VIRUS NUCLEOCAPSID;

HEPATITIS C VIRUS; RNA VIRUSES;

EID: 0034712884     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2000.0252     Document Type: Article

References (38)

1. Altschuh D., Dubs M.-C., Weiss E., Zeder-Luts G., van Regenmortel M. H. V. Determination of kinetic constants for the interaction between a monoclonal antibody and peptides using surface plasmon resonance. Biochemistry. 31:1992;6298-6304.
2. Baumert T. F., Ito S., Wong D. T., Liang T. J. Hepatitis C virus structural proteins assemble into viruslike particles in insect cells. J. Virol. 72:1998;3827-3836.
3. Brown E. A., Zhang H., Ping L.-H., Lemon S. M. Secondary structure of the 5′ nontranslated regions of hepatitis C virus and pestivirus genomic RNAs. Nucleic Acids Res. 20:1992;5041-5045.
4. Bukh J., Purcell R., Miller R. Sequence analysis of the 5′ non-coding region of hepatitis C virus. Proc. Natl. Acad. Sci. USA. 89:1992;4942-4946.
5. Choo Q.-L., Richman K. H., Han J. H., Bereger K., Lee C., Dong C., Gallegos C., Coit D., Medina-Selby A., Barr P. J., Weiner A. J., Bradly D. W., Kuo G., Houghton M. Genetic organization and diversity of the hepatitis C virus. Proc. Natl. Acad. Sci. USA. 88:1991;2451-2455.
6. Fisher R. J., Rein A., Fivash M., Urbaneja M. A., Casas-Finet J. R., Medaglia M., Henderson L. E. Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides. J. Virol. 72:1998;1902-1909.
7. Fukushi S., Katayama K., Kurihara C., Ishiyama N., Hoshino F. B., Ando T., Oya A. Complete 5′ noncoding region is necessary for the efficient internal initiation of hepatitis C virus RNA. Biochem. Biophys. Res. Commun. 199:1994;425-432.
8. Grakoui A., Wychowski C., Lin C., Feinstone S. M., Rice C. M. Expression and identification of hepatitis C virus polyprotein cleavage products. J. Virol. 67:1993;1385-1395.
9. Handschuh G., Caselmann W. H. Bacterial expression and purification of hepatitis C virus capsid proteins of different size. J. Hepatol. 22:1995;143-150.
10. Harada S., Watanabe Y., Takeuchi K., Suzuki T., Katayama T., Takeda Y., Saito I., Miyamura T. Expression of processed core protein of hepatitis C virus in mammalian cells. J. Virol. 65:1991;3015-3021.
11. Honda M., Rijnbrand R., Abell G., Kim D., Lemon S. M. Natural variation in translational activities of the 5′ nontranslated RNAs of hepatitis C virus genotype 1a and 1b: Evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site. J. Virol. 73:1999;4941-4951.
12. Houghton M., Weiner A., Han J., Kuo G., Choo Q.-L. Moleculer biology of the hepatitis C viruses: Implications for diagnosis, development and control of viral disease. Hepatology. 14:1991;381-388.
13. Hsu H. H., Donets M., Greenberg H. B., Feinstone S. M. Characterization of hepatitis C virus structural proteins with a recombinant baculovirus expression system. Hepatology. 17:1993;763-771.
14. Hwang S. B., Lo S.-Y., Ou J.-H., Lai M. M. C. Detection of cellular protein and viral core protein interacting with the 5′ untranslated region of hepatitis C virus RNA. J. Biomed. Sci. 2:1995;227-236.
15. Jackson R., Howell M., Kaminski A. The novel mechanism of initiation of picornavirus RNA translation. Trends Biochem. Sci. 15:1990;477-483.
16. Kato N., Hijikata M., Ootsuyama Y., Nakagawa M., Ohkoshi S., Sugimura T., Shimotohno K. Molecular cloning of the human hepatitis C virus genome from Japanese patients with non-A, non-B hepatitis. Proc. Natl. Acad. Sci. USA. 81:1990;9524-9528.
17. Kim D. W., Suzuki R., Harada T., Saito I., Miyamura T. Trans-suppression of gene expression by hepatitis C viral core protein. Jpn. J. Med. Sci. Biol. 47:1994;211-220.
18. Kouznetzoff A., Buckle M., Tordo N. Identification of a region of the rabies virus N protein involved in direct binding to the viral RNA. J. Gen. Virol. 79:1998;1005-1013.
19. Liu Z., Yang D., Qiu Z., Lim K. T., Chong P., Gillam S. Identification of domains in rubella virus genomic RNA and capsid protein necessary for specific interaction. J. Virol. 70:1996;2184-2190.
20. Lo S.-Y., Selby M. J., Ou J.-H. Interaction between hepatitis C virus core protein and E1 envelope protein. J. Virol. 70:1996;5177-5182.
21. Malmborg A. C., Johansson K., Sigvardsson M., Borrebaeck C. A., Leanderson T. Real-time analysis of Oct protein-octamer interaction and transcription complex assembly. Mol. Immunol. 32:1995;1429-1442.
22. Matsumoto M., Hwang S. B., Jeng K.-S., Zhu N., Lai M. M. C. Homotipic interaction and multimerization of hepatitis C virus core protein. Virology. 218:1996;43-51.
23. Matsuura Y., Harada S., Suzuki R., Watanabe Y., Inoue Y., Saito I., Miyamura T. Expression of processed envelope protein of hepatitis C virus in mammalian and insect cells. J. Virol. 66:1992;1425-1431.
24. Matsuura Y., Possee R. D., Overton H. A., Bishop D. H. L. Baculovirus expression vector: The requirements for high level expression of proteins, including glycoproteins. J. Gen. Virol. 68:1987;1233-1250.
25. Matsuura Y., Suzuki T., Sato M., Aizaki H., Saito I., Miyamura T. Processing of E1 and E2 glycoproteins of hepatitis C virus expressed in mammalian and insect cells. Virology. 205:1994;141-150.
26. Moyer S. A., Smallwood-Kentro S., Haddad A., Prevec L. Assembly and transcription of synthetic vesicular stomatitis virus nucleocapsids. J. Virol. 65:1991;2170-2178.
27. Okamoto H., Okada S., Sugiyama Y., Kurai K., Iizuka H., Machida A., Miyakawa Y., Mayumi M. Nucleotide sequence of the genomic RNA of hepatitis C virus isolated from a human carrier: Comparison with reported isolates for conserved and divergent regions. J. Gen. Virol. 72:1991;2697-2704.
28. Paal K., Baeuerle P. A., Schmitz L. Basal transcription factors TBP and TfIIB and the viral coactivator E1A 13S bind with distinct affinities and kinetics to the transactivation domain of NF-75 B p65. Nucleic Acids Res. 25:1997;1050-1055.
29. Reynolds J. E., Kaminski A., Kettinen H. J., Grace B. E., Clarke A. R., Carroll D. J., Rowlands D. J., Jackson R. J. Unique features of internal initiation of hepatitis C virus RNA translation. EMBO J. 14:1995;6010-6020.
30. Rijnbrand R., Bredenbeek P., van der Straaten T., Whetter L., Inchauspe G., Lemon S., Spaan W. Almost the entire 5′ non-translated region of hepatitis C virus is required for cap-independent translation. FEBS Lett. 365:1995;115-119.
31. Santolini E., Migliaccio G., La Monica N. Biosynthesis and biochemical properties of the hepatitis C virus core protein. J. Virol. 68:1994;3631-3641.
32. Selby M. J., Choo Q.-L., Berger K., Kuo G., Glazer E., Eckart M., Lee C., Chien D., Kuo C., Houghton M. Expression, identification and subcellular localization of the proteins encoded by the hepatitis C virus genome. J. Gen. Virol. 74:1993;1103-1113.
33. Shimoike T., Mimori S., Tani H., Matsuura Y., Miyamura T. Interaction of hepatitis C virus core protein with viral sense RNA and suppression of its translation. J. Virol. 73:1999;9718-9725.
34. Shoji I., Suzuki T., Sato M., Aizaki H., Chiba T., Matsuura Y., Miyamura T. Internal processing of hepatitis C virus NS3 protein. Virology. 254:1999;315-323.
35. Takamizawa A., Mori C., Fuke I., Manabe S., Murakami S., Fujita J., Onishi E., Andoh T., Yoshida I., Okayama H. Structure and organization of the hepatitis C virus genome isolated from human carriers. J. Virol. 65:1991;1105-1113.
36. Tsukiyama-Kohara K., Iizuka N., Kohara M., Nomoto A. Internal ribosome entry site within hepatitis C virus RNA. J. Virol. 66:1992;1476-1483.
37. Van Ryk D. I., Venkatesan S. Real-time kinetics of HIV Rev-Rev responsible element interactions. J. Biol. Chem. 274:1999;17452-17463.
38. Wang C., Sarnow P., Siddiqui A. Translation of human hepatitis C virus RNA in cultured cells is mediated by an internal ribosome-binding mechanism. J. Virol. 67:1993;3338-3344.