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Volumn 267, Issue 1439, 2000, Pages 109-116

Complexity of the simplest phylogenetic estimation problem

Author keywords

Consistency; Identifiability; Maximum likelihood; Molecular phylogenetics; Parameter space; Sample space

Indexed keywords

ARTICLE; DATA ANALYSIS; MAXIMUM LIKELIHOOD METHOD; PHYLOGENY; PRIORITY JOURNAL; PROBLEM SOLVING; REGRESSION ANALYSIS; STATISTICAL MODEL;

EID: 0034700877     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2000.0974     Document Type: Article
Times cited : (42)

References (25)
  • 1
    • 0020328686 scopus 로고
    • Mitochondrial DNA sequences of primates, tempo and mode of evolution
    • Brown, W. M., Prager, E. M., Wang, A. & Wilson, A. C. 1982 Mitochondrial DNA sequences of primates, tempo and mode of evolution. J. Mol. Evol. 18, 225-239.
    • (1982) J. Mol. Evol. , vol.18 , pp. 225-239
    • Brown, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 2
    • 0032927161 scopus 로고    scopus 로고
    • Topological bias and inconsistency of maximum likelihood using wrong models
    • Bruno, W. J. & Halpern, A. L. 1999 Topological bias and inconsistency of maximum likelihood using wrong models. Mol. Biol. Evol. 15, 564-566.
    • (1999) Mol. Biol. Evol. , vol.15 , pp. 564-566
    • Bruno, W.J.1    Halpern, A.L.2
  • 3
    • 0000156374 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza, L. L. & Edwards, A. W. F. 1967 Phylogenetic analysis: models and estimation procedures. Evolution 21, 550-570.
    • (1967) Evolution , vol.21 , pp. 550-570
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 4
    • 0029919254 scopus 로고    scopus 로고
    • Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency
    • Chang, J. 1996 Full reconstruction of Markov models on evolutionary trees: identifiability and consistency. Math. Biosci. 134, 189-215.
    • (1996) Math. Biosci. , vol.134 , pp. 189-215
    • Chang, J.1
  • 5
    • 0001650804 scopus 로고
    • Estimation of the branch points of a branching diffusion process
    • Edwards, A. W. F. 1970 Estimation of the branch points of a branching diffusion process (with discussion). J. R. Statist. Soc. B 32, 155-174.
    • (1970) J. R. Statist. Soc. B , vol.32 , pp. 155-174
    • Edwards, A.W.F.1
  • 6
    • 0028925649 scopus 로고
    • Assessing molecular phylogenies
    • Edwards, A. W. F. 1995 Assessing molecular phylogenies. Science 267, 253.
    • (1995) Science , vol.267 , pp. 253
    • Edwards, A.W.F.1
  • 7
    • 0030581603 scopus 로고    scopus 로고
    • Bootstrap confidence levels for phylogenetic trees
    • Efron, B., Halloran, E. & Holmes, S. 1996 Bootstrap confidence levels for phylogenetic trees. Proc. Natl Acad. Sci. USA 93, 13 429-13 434.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 13429-13434
    • Efron, B.1    Halloran, E.2    Holmes, S.3
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981 Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis, D. M. & Bull, J. J. 1993 An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42, 182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 11
    • 11944268967 scopus 로고
    • The performance of phylogenetic methods in simulation
    • Huelsenbeck, J. P. 1995 The performance of phylogenetic methods in simulation. Syst. Biol. 44, 17-48.
    • (1995) Syst. Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 12
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (ed. H. N. Munro), New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. 1969 Evolution of protein molecules. In Mammalian protein metabolism, vol. 3 (ed. H. N. Munro), pp. 21-123. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 13
    • 0031498410 scopus 로고    scopus 로고
    • Phylogenetic inference for binary data on dendograms using Markov chain Monte Carlo methods
    • Mau, B. & Newton, M. A. 1997 Phylogenetic inference for binary data on dendograms using Markov chain Monte Carlo methods. J. Comput. Graphical Statist. 6, 122-131.
    • (1997) J. Comput. Graphical Statist. , vol.6 , pp. 122-131
    • Mau, B.1    Newton, M.A.2
  • 15
    • 0001879933 scopus 로고
    • Molecular studies of evolution: A source of novel statistical problems
    • (ed. S. S. Gupta & J. Yackel), New York: Academic Press
    • Neyman, J. 1971 Molecular studies of evolution: a source of novel statistical problems. In Statistical decision theory and related topics (ed. S. S. Gupta & J. Yackel), pp. 1-27. New York: Academic Press.
    • (1971) Statistical Decision Theory and Related Topics , pp. 1-27
    • Neyman, J.1
  • 16
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    • Rannala, B. & Yang, Z. 1996 Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43, 304-311.
    • (1996) J. Mol. Evol. , vol.43 , pp. 304-311
    • Rannala, B.1    Yang, Z.2
  • 17
    • 0031284363 scopus 로고    scopus 로고
    • On the consistency of maximum likelihood estimation of phylogenetic trees from nucleotide sequences
    • Rogers, J. S. 1997 On the consistency of maximum likelihood estimation of phylogenetic trees from nucleotide sequences. Syst. Biol. 46, 354-357.
    • (1997) Syst. Biol. , vol.46 , pp. 354-357
    • Rogers, J.S.1
  • 18
    • 0023898050 scopus 로고
    • Property and efficiency of the maximum likelihood method for molecular phytogeny
    • Saitou, N. 1988 Property and efficiency of the maximum likelihood method for molecular phytogeny. J. Mol. Evol. 27, 261-273.
    • (1988) J. Mol. Evol. , vol.27 , pp. 261-273
    • Saitou, N.1
  • 20
    • 12044257838 scopus 로고
    • Statistical properties of the maximum likelihood method of phylogenetic estimation and comparison with distance matrix methods
    • Yang, Z. 1994 Statistical properties of the maximum likelihood method of phylogenetic estimation and comparison with distance matrix methods. Syst. Biol. 43, 329-342.
    • (1994) Syst. Biol. , vol.43 , pp. 329-342
    • Yang, Z.1
  • 21
    • 0029878719 scopus 로고    scopus 로고
    • Phylogenetic analysis using parsimony and likelihood methods
    • Yang, Z. 1996 Phylogenetic analysis using parsimony and likelihood methods. J. Mol. Evol. 42, 294-307.
    • (1996) J. Mol. Evol. , vol.42 , pp. 294-307
    • Yang, Z.1
  • 22
    • 0030638573 scopus 로고    scopus 로고
    • How often do wrong models produce better phylogenies?
    • Yang, Z. 1997 How often do wrong models produce better phylogenies? Mol. Biol. Evol. 14, 105-108.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 105-108
    • Yang, Z.1
  • 23
    • 0008887058 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: A Markov chain Monte Carlo method
    • Yang, Z. & Rannala, B. 1997 Bayesian phylogenetic inference using DNA sequences: a Markov chain Monte Carlo method. Mol. Biol. Evol. 43, 304-311.
    • (1997) Mol. Biol. Evol. , vol.43 , pp. 304-311
    • Yang, Z.1    Rannala, B.2
  • 24
    • 0029469716 scopus 로고
    • Maximum likelihood trees from DNA sequences: A peculiar statistical estimation problem
    • Yang, Z., Goldman, N. & Friday, A. E. 1995 Maximum likelihood trees from DNA sequences: a peculiar statistical estimation problem. Syst. Biol. 44, 384-399.
    • (1995) Syst. Biol. , vol.44 , pp. 384-399
    • Yang, Z.1    Goldman, N.2    Friday, A.E.3
  • 25
    • 0026443498 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock
    • As this paper exceeds the maximum length normally permitted, the author has agreed to contribute to production costs
    • Zharkikh, A. & Li, W.-H. 1992 Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol. Biol. Evol. 9, 1119-1147. As this paper exceeds the maximum length normally permitted, the author has agreed to contribute to production costs.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1119-1147
    • Zharkikh, A.1    Li, W.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.