Amplotyping of microdissected, methanol-fixed lung carcinoma by arbitrarily primed polymerase chain reaction

International Journal of Cancer

Volumn 89, Issue 1, 2000, Pages 19-25

  Anami, Yoichi ^a   Takeuchi, Tomoyo ^b   Mase, Kentaro ^b   Yasuda, Jun ^a   Hirohashi, Setsuo ^a   Perucho, Manuel ^c   Noguchi, Masayuki ^a,b  

^a NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

^b UNIVERSITY OF TSUKUBA   (Japan)

^c BURNHAM INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; METHANOL;

ARTICLE; CANCER STAGING; CHROMOSOME 22Q; CHROMOSOME DELETION; CLINICAL ARTICLE; DNA FINGERPRINTING; HUMAN; HUMAN TISSUE; LARGE CELL CARCINOMA; LUNG ADENOCARCINOMA; LUNG CARCINOMA; LUNG SMALL CELL CANCER; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SQUAMOUS CELL CARCINOMA; TISSUE FIXATION;

ADENOCARCINOMA; CARCINOMA, SMALL CELL; CHROMOSOME ABERRATIONS; DNA FINGERPRINTING; DNA, NEOPLASM; HUMANS; LUNG NEOPLASMS; METHANOL; POLYMERASE CHAIN REACTION; TISSUE FIXATION;

EID: 0034688184     PISSN: 00207136     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0215(20000120)89:1<19::AID-IJC4>3.0.CO;2-3     Document Type: Article

References (21)

1. ALTSCHUL, A.F., MADDEN, T.L., SCHAFFER, A.A., ZHANG, J., ZHANG, Z., MILLER, W. and LIPMAN, D.J., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402 (1997).
2. COLLINS, A., FRÉZAL, J., TEAGUE, J. and MORTON, N.E., A metric map of humans: 23,500 loci in 850 bands. Proc. nat. Acad. Sci. (Wash.), 93,14771-14775 (1996).
3. COLLINS, J.E. and 31 OTHERS, A high-density YAC contig map of human chromosome 22. Nature (Lond.), 377, 367-379 (1995).
4. DIB, C. and 13 OTHERS, A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature (Lond.), 380, 152-154 (1996).
5. HUDSON, T.J. and 50 OTHERS, An STS-based map of the human genome. Science, 270, 1945-1954 (1995).
6. IONOV, Y., PEINADO, M.A., MALKHOSYAN, S., SHIBATA, D. and PERUCHO, M., Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis. Nature (Lond.), 363, 558-561 (1993).
7. JONSON, B.E. and KELLEY, M.J., Overview of genetic and molecular events in the pathogenesis of lung cancer. Chest, 103, 1s-3s (1993).
8. LUGWIG, C.U., RAEFLE, G., DALQUEN, P., STULZ, P., STAAHEL, R. and OBRECHT, J.P., Allelic loss on the short arm of chromosome 11 in non-small-cell lung cancer. Int. J. Cancer, 49, 661-665 (1991).
9. MALKHOSYAN, S., YASUDA, J., SOTO, J.L., SEKIYA, T., YOKOTA, J. and PERUCHO, M., Molecular karyotype (amplotype) of metastatic colorectal cancer by unbased arbitrarily primed PCR DNA fingerprinting. Proc. nat. Acad. Sci. (Wash.), 95, 10170-10175 (1998).
10. MERLO, A., GABRIELSON, E., ASKIN, F. and SIDRANSKY, D., Frequent loss of chromosome 9 in human primary non-small cell lung cancer. Cancer Res., 54, 640-642 (1994).
11. MOSKALUK, C.A. and KERN, S.E., Microdissection and polymerase chain reaction amplification of genomic DNA from histological tissue sections. Amer. J. Pathol., 150, 1547-1552 (1997).
12. NOGUCHI, M., FURUYA, S., TAKEUCHI, T. and HIROHASHI, S., Modified formalin and methanol fixation methods for molecular biological and morphological analysis. Pathol. Int., 47, 685-691 (1997).
13. REY, J.A., BELLO, M.J., JIMENEZ-LARA, A.M., VAQUERO, J., KUSAK, M.E., DE CAMPOS, J.M., SARASA, J.L. and PESTANA, A., Loss of heterozygosity for distal markers on 22q in human gliomas. Int. J. Cancer, 51, 703-706 (1992).
14. SHIBATA, D., SCHAEFFER, J., LI, Z., CAPELLA, G. and PERUCHO, M., Genetic heterogeneity of the c-K-ras locus in colorectal adenomas but not adeno-carcinomas. J. nat. Cancer Inst., 85, 1058-1062 (1993).
15. SHISEKI, M., KOHNO, T., ADACHI, J., OKAZAKI, T., OTSUKA, T., MIZOGUCHI, H., NOGUCHI, M., HIROHASHI, S. and YOKOTA, J., Comparative allelotype of early and advanced stage non-small cell lung carcinomas. Genes Chromosomes Cancer, 17, 71-77 (1996).
16. SHISEKI, M., KOHNO, T., NISHIKAWA, R., SAMESHIMA, Y., MIZOGUCHI, H. and YOKOTA, J., Frequent allelic losses on chromosomes 2q, 18q, and 22q in advanced non-small cell lung carcinoma. Cancer Res., 54, 5643-5648 (1994).
17. SUZUKI, Y., ORITA, M., SHIRAISHI, M., HAYASHI, K. and SEKIYA, T., Detection of ras gene mutations in human lung cancer by single-strand conformation polymorphism analysis of polymerase chain reaction products. Oncogene, 5, 1037-1043 (1990).
18. TAMURA, K., ZHANG, X., MURAKAMI, Y., HIROHASHI, S., XU, H-J., HU, S-X., BENEDICT, W.F. and SEKIYA, T. Deletion of three distinct regions on chromosome 13q in human non-small cell lung cancer. Int. J. Cancer, 74, 45-49 (1997).
19. WELSH, J. and MCCLELLAND, M., Fingerprinting genomes using arbitrary primers. Nucleic Acids Res., 18, 7213-7218 (1990).
20. WIELAND, H. and BOHM, M., Frequent allelic deletion at a novel locus of chromosome 5 in human lung cancer. Cancer Res., 54, 1772-1774 (1994).
21. YASUDA, J., NAVARRO, M., MALKHOSYAN, S., VELAZQUEZ, A., ARRIBAS, R., SEKIYA, T. and PERUCHO, M., Chromosomal assignment of human DNA fingerprint sequences by simultaneous hybridization to arbitrarily primed PCR products from human/rodent monochromosome cell hybrids. Genomics, 34, 1-8 (1996).