Dynamics of the RNA hairpin GNRA tetraloop

Biochemistry

Volumn 39, Issue 15, 2000, Pages 4500-4507

  Menger, Marcus ^a   Eckstein, Fritz ^b   Porschke, Dietmar ^a  

^a MAX PLANCK INSTITUTE FOR BIOPHYSICAL CHEMISTRY   (Germany)

^b MAX PLANCK INSTITUTE OF EXPERIMENTAL MEDICINE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; CALCIUM ION; MAGNESIUM ION; OLIGOMER; PHENYLALANINE TRANSFER RNA; RIBONUCLEOTIDE; RIBOZYME; RNA;

ANTICODON; ARTICLE; CRYSTALLOGRAPHY; FLUORESCENCE; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; RNA CONFORMATION; RNA SEQUENCE; RNA STRUCTURE; X RAY ANALYSIS;

2-AMINOPURINE; BASE SEQUENCE; CALCIUM; CATIONS, DIVALENT; FLUORESCENCE; KINETICS; MAGNESIUM; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; NUCLEIC ACID DENATURATION; OLIGORIBONUCLEOTIDES; RNA; SPECTROMETRY, FLUORESCENCE; TEMPERATURE; THERMODYNAMICS; TITRIMETRY; ULTRAVIOLET RAYS;

MUS;

EID: 0034681945     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi992297n     Document Type: Article

References (41)

1. Varani, G. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 379-404.
2. Westhof, E., Romby, P., Romaniuk, P. J., Ebel, J. P., Ehresmann, C., and Ehresmann, B. (1989) J. Mol. Biol. 207, 417-431.
3. de Stevenson, I. L., Romby, P., Baudin, F., Brunel, C., Westhof, E., Ehresmann, C., Ehresmann, B., and Romaniuk, P. J. (1991) J. Mol. Biol. 219, 243-255.
4. Cheong, C., Varani, G., and Tinoco, I., Jr. (1990) Nature 346, 680-682.
5. Heus, H. A., and Pardi, A. (1991) Science 253, 191-194.
6. Jucker, F. M., and Pardi, A. (1995) Biochemistry 34, 14416-14427.
7. Jucker, F. M., Heus, H. A., Yip, P. F., Moors, E. H. M., and Pardi, A. (1996) J. Mol. Biol. 264, 968-980.
8. Pley, H., Flaherty, K. M., and McKay, D. B. (1994) Nature 372, 111-113.
9. Scott, W. G., Finch, J. T., and Klug, A. (1995) Cell 81, 991-1002.
10. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Science 273, 1678-1685.
11. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Szewczak, A. A., Kundrot, C. E., Cech, T. R., and Doudna, J. A. (1996) Science 273, 1696-1699.
12. Perbandt, M., Nolte, A., Lorenz, S., Bald, R., Betzel, C., and Erdmann, V. A. (1998) FEBS Lett. 429, 211-215.
13. Leulliot, N., Baumruk, V., Abdelkafi, M., Turpin, P. Y., Namane, A., Gouyette, C., Huynh-Dinh, T., and Ghomi, M. (1999) Nucleic Acids Res. 27, 1398-1404.
14. Meroueh, M., and Chow, C. S. (1999) Nucleic Acids Res. 27, 1118-1125.
15. Williams, D. J., and Hall, K. B. (1999) Biophys. J. 76, 3192-3205.
16. Akke, M., Fiala, R., Jiang, P., Patel, D., and Palmer, A. G. (1997) RNA 3, 702-709.
17. Kirchner, R., Vogtherr, M., Limmer, S., and Sprinzl, M. (1998) Antisense Nucleic Acid Drug Dev. 8, 507-516.
18. Shubsda, M., Goodisman, J., and Dabrowiak, J. C. (1999) Biophys. Chem. 76, 95-115.
19. Tuschl, T., Ng, M. M. P., Pieken, W., Benseler, F., and Eckstein, F. (1993) Biochemistry 32, 11658-11668.
20. Menger, M., Tuschl, T., Eckstein, F., and Porschke, D. (1996) Biochemistry 35, 14710-14716.
21. Porschke, D., and Jung, M. (1982) Nucleic Acids Res. 10, 6163-6176.
22. Rigler, R., Rabl, C. R., and Jovin, T. M. (1974) Rev. Sci. Instrum. 45, 580-588.
23. Porschke, D., and Jung, M. (1985) J. Biomol. Struct. Dyn. 2, 1173-1184.
24. Diekmann, S., Hillen, W., Morgeneyer, B., Wells, R. D., and Porschke, D. (1982) Biophys. Chem. 15, 263-270.
25. Avery, L. (1982) J. Chem. Phys. 76, 3242-3248.
26. Ilgenfritz, G. (1977) Mol. Biol. Biochem. Biophys. 24, 1-42.
27. Ward, D. C., Reich, E., and Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237.
28. Kelley, S. O., and Barton, J. K. (1999) Science 283, 375-381.
29. Porschke, D. (1973) Eur. J. Biochem. 39, 117-126.
30. Porschke, D. (1977) Mol. Biol. Biochem. Biophys. 24, 191-218.
31. Porschke, D. (1978) Biopolymers 17, 315-323.
32. Dewey, T. G., and Turner, D. H. (1979) Biochemistry 18, 5757-5762.
33. Diebler, H., Eigen, M., Ilgenfritz, G., Maass, G., and Winkler, R. (1969) Pure Appl. Chem. 20, 93-115.
34. Porschke, D. (1995) in The Biological chemistry of magnesium (Cowan, J. A, Ed.) VCH Publishers, New York.
35. Wedekind, J. E., and McKay, D. B. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 475-502.
36. Labuda, D., and Porschke, D. (1982) Biochemistry 21, 49-53.
37. Bujalowski, W., Graeser, E., McLaughlin, L. W., and Porschke, D. (1986) Biochemistry 25, 6365-6371.
38. Nowakowski, J., Miller, J. L., Kollman, P. A., and Tinoco, I., Jr. (1996) J. Am. Chem. Soc. 118, 12812-12820.
39. Hermann, T., Auffinger, P., and Westhof, E. (1998) Eur. Biophys. J. 27, 153-165.
40. Petrova, P., Koca, J., and Imberty, A. (1999) J. Am. Chem. Soc. 121, 5535-5547.
41. Reif, B., Wittmann, V., Schwalbe, H., Griesinger, C., Wörner, K., Jahn-Hofmann, K., and Engels, J. W. (1997) Helv. Chim. Acta 80, 1952-1971.