Translesion replication by DNA polymerase β is modulated by sequence context and stimulated by fork-like flap structures in DNA

Biochemistry

Volumn 39, Issue 2, 2000, Pages 397-405

  Daube, Shirley S ^a   Arad, Gali ^a   Livneh, Zvi ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DNA POLYMERASE; OLIGONUCLEOTIDE; PHOSPHATE; SINGLE STRANDED DNA;

ARTICLE; CARCINOGENESIS; DNA DAMAGE; DNA REPAIR; DNA REPLICATION; DNA SEQUENCE; DNA STRUCTURE; GENE MUTATION; MOLECULAR BIOLOGY; NONHUMAN; PRIORITY JOURNAL;

BINDING SITES; DNA; DNA POLYMERASE BETA; DNA PRIMERS; DNA REPLICATION; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENZYME ACTIVATION; MOLECULAR STRUCTURE; TEMPLATES, GENETIC;

BACTERIA (MICROORGANISMS);

EID: 0034681138     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991443m     Document Type: Article

References (41)

1. Sobol, R. W., Horton, J. K., Kuhn, R., Gu, H., Singhal, R. K., Prasad, R., Rajewsky, K., and Wilson, S. H. (1996) Nature 379, 183-186.
2. Plug, A. W., Clairmont, C. A., Sapi, E., Ashley, T., and Sweasy, J. B. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 1327-1331.
3. Kumar, A., Abbotts, J., Karawya, E. M., and Wilson, S. H. (1990) Biochemistry 29, 7156-7159.
4. Matsumoto, Y., and Kim, K. (1995) Science 269, 699-702.
5. Singhal, R. K., and Wilson, S. H. (1993) J. Biol. Chem. 268, 15906-15911.
6. Kunkel, T. A., and Alexander, P. S. (1986) J. Biol. Chem. 261, 160-166.
7. Chagovetz, A. M., Sweasy, J. B., and Preston, B. D. (1997) J. Biol. Chem. 272, 27501-27504.
8. Osheroff, W. P., Jung, H. K., Beard, W. A., Wilson, S. H., and Kunkel, T. A. (1999) J. Biol. Chem. 274, 3642-3650.
9. Tanabe, K., Bohn, E. W., and Wilson, S. H. (1979) Biochemistry 18, 3401-3406.
10. Kunkel, T. A. (1985) J. Biol. Chem. 260, 5787-5796.
11. Kunkel, T. A. (1990) Biochemistry 29, 8003-8011.
12. Shibutani, S., and Grollman, A. P. (1993) J. Biol. Chem. 268, 11703-11710.
13. Hoffmann, J. S., Pillaire, M. J., Garcia-Estefania, D., Lapalu, S., and Villani, G. (1996) J. Biol. Chem. 271, 15386-15392.
14. Efrati, E., Tocco, G., Eritja, R., Wilson, S. H., and Goodman, M. F. (1997) J. Biol. Chem. 272, 2559-2569.
15. Hashim, M. F., Schnetz-Boutaud, N., and Marnett, L. J. (1997) J. Biol. Chem. 272, 20205-20212.
16. Beard, W. A., and Wilson, S. H. (1995) Methods Enzymol. 262, 98-107.
17. Paz-Elizur, T., Takeshita, M., Goodman, M., O'Donnell, M., and Livneh, Z. (1996) J. Biol. Chem. 271, 24662-24669.
18. Paz-Elizur, T., Takeshita, M., and Livneh, Z. (1997) Biochemistry 36, 1766-1773.
19. Takeshita, M., Chang, C., Johnson, F., Will, S., and Grollman, A. P. (1987) J. Biol. Chem. 262, 10171-10179.
20. Randall, S. K., Eritja, R., Kaplan, B. E., Petruska, J., and Goodman, M. (1987) J. Biol. Chem. 262, 6864-6870.
21. Saenger, W. (1984) Principles of Nucleic Acid Structure, pp 134-137, Springer-Verlag, New York.
22. Reha-Krantz, L. J., Nonay, R. L., Day, R. S., III, and Wilson, S. H. (1996) J. Biol. Chem. 271, 20088-20095.
23. Hatahet, Z., Zhou, M., Reha-Krantz, L. J., Ide, H., Morrical, S. W., and Wallace, S. S. (1999) J. Mol. Biol. 286, 1045-1057.
24. Pelletier, H., Sawaya, M. R., Wolfe, W., Wilson, S. H., and Kraut, J. (1996) Biochemistry 35, 12742-12761.
25. Sagher, D., and Strauss, B. (1983) Biochemistry 22, 4518-4526.
26. Schaaper, R. M., Kunkel, T. A., and Loeb, L. A. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 487-491.
27. Sawaya, M. R., Prasad, R., Wilson, S. H., Kraut, J., and Pelletier, H. (1997) Biochemistry 36, 11205-11215.
28. Hoffmann, J. S., Pillaire, M. J., Lesca, C., Burnouf, D., Fuchs, R. P. P., Defais, M., and Villani, J. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 13766-13769.
29. Villani, G., Le Gac, N. T., and Hoffman, J. S. (1999) in Cisplatin: Chemistry and Biochemistry of a Leading Anticancer Drug (Lippard, B., Ed.) pp 135-157, Wiley-VCH, New York.
30. Gibbs, P. E., McGregor, W. G., Maher, V. M., Nisson, P., and Lawrence, C. W. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 6876-6880.
31. Xiao, W., Lechler, T., Chow, B. L., Fontanie, T., Agustus, M., Carter, K. C., and Wei, Y. F. (1998) Carcinogenesis 19, 945-949.
32. Lin, W., Wu, X., and Wang, Z. (1999) Mutat. Res. 433, 89-98.
33. Van Sloun, P. P., Romeijn, R. J., and Eeken, J. C. (1999) Mutat. Res. 433, 109-116.
34. Masutani, C., Kusumoto, R., Yamada, A., Dohmae, N., Yokoi, M., Yuasa, M., Araki, M., Iwai, S., Takio, K., and Hanaoka, F. (1999) Nature 399, 700-704.
35. Johnson, R. E., Kondratick, C. M., Prakash, S., and Prakash, L. (1999) Science 285, 263-265.
36. Clairmont, C. A., Narayanan, L., Sun, K. W., Glazer, P. M., and Sweasy, J. B. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 9580-9585.
37. Steighner, R. J., and Povirk, L. F. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 8350-8354.
38. Kim, K., Biade, S., and Matsumoto, Y. (1998) J. Biol. Chem. 273, 8842-8848.
39. Klungland, A., and Lindahl, T. (1997) EMBO J. 16, 3341-3348.
40. Dianov, G. L., Prasad, R., Wilson, S. H., and Bohr, V. A. (1999) J. Biol. Chem. 274, 13741-13743.
41. Ward, J. F. (1988) Prog. Nucleic Acid Res. Mol. Biol. 35, 95-125.