Side chains in transmembrane helices are shorter at helix-helix interfaces

Proteins: Structure, Function and Genetics

Volumn 40, Issue 3, 2000, Pages 429-435

  Jiang, Sulin ^a   Vakser, Ilya A ^a  

^a MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

Docking; Molecular recognition; Protein modeling; Receptors; Structure prediction

Indexed keywords

DOCKING PROTEIN; MEMBRANE PROTEIN;

ALPHA HELIX; ARTICLE; CONFORMATIONAL TRANSITION; MOLECULAR MODEL; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN INTERACTION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

AMINO ACIDS; COMPUTER SIMULATION; MEMBRANE PROTEINS; MODELS, MOLECULAR; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SUPPORT, NON-U.S. GOV'T; SUPPORT, U.S. GOV'T, NON-P.H.S.;

EID: 0034663732     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/1097-0134(20000815)40:3<429::AID-PROT80>3.0.CO;2-2     Document Type: Article

References (17)

1. Principles of membrane protein assembly and structure
2. Modeling transmembrane helical oligomers
3. A systematic study of low-resolution recognition in protein-protein complexes
4. Protein docking for low-resolution structures
5. Low-resolution docking: Prediction of complexes for underdetermined structures
6. Long-distance potentials: An approach to the multiple-minima problem in ligand-receptor interaction
7. Main-chain complementarity in protein-protein recognition
8. Folding funnels, binding funnels, and protein function
9. Polymer principles and protein folding
10. Helix packing in membrane proteins
11. Electron-crystallographic refinement of the structure of bacteriorhodopsin
12. Crystallographic refinement at 2.3 Å resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis
13. The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å
14. The structure of the potassium channel: Molecular basis of k+ conduction and selectivity
15. Electron transfer by domain movement in cytochrome b1
16. A simplified representation of protein conformations for rapid simulation of protein folding