-
1
-
-
0017895903
-
The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
-
Manning G.S. The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Q. Rev. Biophys. 11:1978;179-246.
-
(1978)
Q. Rev. Biophys.
, vol.11
, pp. 179-246
-
-
Manning, G.S.1
-
3
-
-
0026808625
-
Thermodynamics of ligand-nucleic acid interactions
-
Lohman T.M., Mascotti D.P. Thermodynamics of ligand-nucleic acid interactions. Methodes Enzymol. 212:1992;400-424.
-
(1992)
Methodes Enzymol.
, vol.212
, pp. 400-424
-
-
Lohman, T.M.1
Mascotti, D.P.2
-
7
-
-
0026616638
-
25Mg spin relaxation in Mg-DNA solutions: Temperature variation and chemical exchange effects
-
25Mg spin relaxation in Mg-DNA solutions: temperature variation and chemical exchange effects. Biopolymers. 32:1992;1339-1350.
-
(1992)
Biopolymers
, vol.32
, pp. 1339-1350
-
-
Berggren, E.1
Nordenskiöld, L.2
Braunlin, W.H.3
-
9
-
-
0025816853
-
The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals
-
Grzeskowiak K., Yanaga K., Prive G.G., Dickerson R.E. The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals. J. Biol. Chem. 266:1991;8861-8883.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 8861-8883
-
-
Grzeskowiak, K.1
Yanaga, K.2
Prive, G.G.3
Dickerson, R.E.4
-
10
-
-
0032499635
-
The B-DNA dodecamer at high resolution reveals a spine of water on sodium
-
Shui X., McFail-Isom L., Hu G.G., Williams L.D. The B-DNA dodecamer at high resolution reveals a spine of water on sodium. Biochemistry. 37:1998;8341-8355.
-
(1998)
Biochemistry
, vol.37
, pp. 8341-8355
-
-
Shui, X.1
McFail-Isom, L.2
Hu, G.G.3
Williams, L.D.4
-
11
-
-
0032497951
-
Divalent cations stabilize unstacked conformations of DNA and RNA by interacting with base Π systems
-
McFail-Isom L., Shui X., Williams L.D. Divalent cations stabilize unstacked conformations of DNA and RNA by interacting with base Π systems. Biochemistry. 37:1998;17105-17111.
-
(1998)
Biochemistry
, vol.37
, pp. 17105-17111
-
-
McFail-Isom, L.1
Shui, X.2
Williams, L.D.3
-
12
-
-
0023708040
-
Water: An integral part of nucleic acid structure
-
Westhof E. Water: an integral part of nucleic acid structure. Ann. Rev. Phys. Chem. 17:1988;125-144.
-
(1988)
Ann. Rev. Phys. Chem.
, vol.17
, pp. 125-144
-
-
Westhof, E.1
-
14
-
-
0030338497
-
In: Neutrons in biology
-
eds. B.P. Schoenborn and R. Knott, Plenum Press, New York
-
A.E Garcia, G. Hummer and D.M. Soumpasis, in: Neutrons in biology, eds. B.P. Schoenborn and R. Knott, Theoretical Description of Biomolecular Hydration Plenum Press, New York, 1996 p.299-308.
-
(1996)
Theoretical Description of Biomolecular Hydration
, pp. 299-308
-
-
Garcia, A.E.1
Hummer, G.2
Soumpasis, D.M.3
-
15
-
-
0028955215
-
Hydration of nucleic acid fragments: Comparison of theory and experiment for high-resolution crystal structures of RNA, DNA, and DNA-drug complexes
-
Hummer G., Garcia A.E., Soumpasis D.M. Hydration of nucleic acid fragments: comparison of theory and experiment for high-resolution crystal structures of RNA, DNA, and DNA-drug complexes. Biophys. J. 68:1995;1639-1652.
-
(1995)
Biophys. J.
, vol.68
, pp. 1639-1652
-
-
Hummer, G.1
Garcia, A.E.2
Soumpasis, D.M.3
-
16
-
-
0019843568
-
Structure of a B-DNA dodecamer III. Geometry of hydration
-
Drew H.R., Dickerson R.E. Structure of a B-DNA dodecamer III. Geometry of hydration. J. Mol. Biol. 151:1981;535-556.
-
(1981)
J. Mol. Biol.
, vol.151
, pp. 535-556
-
-
Drew, H.R.1
Dickerson, R.E.2
-
17
-
-
0020692923
-
Ordered water structure around a B-DNA dodecamer. A quantitative study
-
Kopka M.L., Fratini A.V., Drew H.R., Dickerson R.E. Ordered water structure around a B-DNA dodecamer. A quantitative study. J. Mol. Biol. 163:1983;129-146.
-
(1983)
J. Mol. Biol.
, vol.163
, pp. 129-146
-
-
Kopka, M.L.1
Fratini, A.V.2
Drew, H.R.3
Dickerson, R.E.4
-
18
-
-
0023164663
-
Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove
-
Alexeev D.G., Lipanov A.A., Skuratovskii I.Y. Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove. Nature. 325:1987;821-823.
-
(1987)
Nature
, vol.325
, pp. 821-823
-
-
Alexeev, D.G.1
Lipanov, A.A.2
Skuratovskii, I.Y.3
-
19
-
-
0000235752
-
NMR evidence for DNA bound water in solution
-
Kubinek M.G., Wemmer D.E. NMR evidence for DNA bound water in solution. J. Am. Chem. Soc. 114:1992;8739-8740.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 8739-8740
-
-
Kubinek, M.G.1
Wemmer, D.E.2
-
21
-
-
0021227193
-
AT base pairs are less stable than GC base pairs in Z-DNA: The crystal structure of d(m(5)CGTAm(5)CG)
-
Wang A.H.-J., Hakoshima T., van der Marel G., van Boom J.H., Rich A. AT base pairs are less stable than GC base pairs in Z-DNA: the crystal structure of d(m(5)CGTAm(5)CG). Cell. 37:1984;321-331.
-
(1984)
Cell
, vol.37
, pp. 321-331
-
-
Wang, A.H.-J.1
Hakoshima, T.2
Van Der Marel, G.3
Van Boom, J.H.4
Rich, A.5
-
22
-
-
0023053306
-
Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5BrC-G) in crystals grown at two temperatures
-
Chevrier B., Dock A.C., Hartmann B. et al. Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5BrC-G) in crystals grown at two temperatures. J. Mol. Biol. 188:1986;707-719.
-
(1986)
J. Mol. Biol.
, vol.188
, pp. 707-719
-
-
Chevrier, B.1
Dock, A.C.2
Hartmann, B.3
-
23
-
-
0023029727
-
DNA conformation is determined by economics in the hydration of phosphate groups
-
Saenger W., Hunter W.N., Kennard O. DNA conformation is determined by economics in the hydration of phosphate groups. Nature. 324:1986;385-388.
-
(1986)
Nature
, vol.324
, pp. 385-388
-
-
Saenger, W.1
Hunter, W.N.2
Kennard, O.3
-
24
-
-
0024370350
-
Measurements of anomalously high hydration of (dA)n.(dT)n double helices in dilute solution
-
Buckin V.A., Kankiya B.I., Bulichov N.V. et al. Measurements of anomalously high hydration of (dA)n.(dT)n double helices in dilute solution. Nature. 340:1989;321-322.
-
(1989)
Nature
, vol.340
, pp. 321-322
-
-
Buckin, V.A.1
Kankiya, B.I.2
Bulichov, N.V.3
-
25
-
-
0024384598
-
Acoustical investigation of poly(dA).poly(dT), poly[d(A-T)].poly[d(A-T)], poly(A).poly(U) and DNA hydration in dilute aqueous solutions
-
Buckin V.A., Kankiya B.I., Sarvazyan A.P., Uedaira H. Acoustical investigation of poly(dA).poly(dT), poly[d(A-T)].poly[d(A-T)], poly(A).poly(U) and DNA hydration in dilute aqueous solutions. Nucleic Acids Res. 17:1989;4189-4203.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 4189-4203
-
-
Buckin, V.A.1
Kankiya, B.I.2
Sarvazyan, A.P.3
Uedaira, H.4
-
26
-
-
0025633424
-
Dielectric study on hydration of B-, A-, and Z-DNA
-
Umehara T., Kuwabara S., Mashimo S., Yagihara S. Dielectric study on hydration of B-, A-, and Z-DNA. Biopolymers. 29:1990;649-656.
-
(1990)
Biopolymers
, vol.29
, pp. 649-656
-
-
Umehara, T.1
Kuwabara, S.2
Mashimo, S.3
Yagihara, S.4
-
27
-
-
0025195658
-
+-induced B-Z transition of poly[d(G-C)] is positive
-
+-induced B-Z transition of poly[d(G-C)] is positive. Biopolymers. 29:1990;1069-1076.
-
(1990)
Biopolymers
, vol.29
, pp. 1069-1076
-
-
MacGregor Jr, R.B.1
Chen, M.Y.2
-
28
-
-
0027395923
-
Volume changes correlate with entropies and enthalpies in the formation of nucleic acid homoduplexes: Different hydration of A and B conformations
-
Rentzeperis D., Kupke D.W., Marky L.A. Volume changes correlate with entropies and enthalpies in the formation of nucleic acid homoduplexes: different hydration of A and B conformations. Biopolymers. 33:1993;117-125.
-
(1993)
Biopolymers
, vol.33
, pp. 117-125
-
-
Rentzeperis, D.1
Kupke, D.W.2
Marky, L.A.3
-
30
-
-
0002497304
-
In: Water and Aqueous Solutions
-
ed. Horne, R. A., New York
-
F.J. Millero, in: Water and Aqueous Solutions, ed. Horne, R. A., The partial molar volumes of electrolytes in aqueous solutions Wiley-Interscience, New York, 1972 p.519-564.
-
(1972)
The Partial Molar Volumes of Electrolytes in Aqueous Solutions Wiley-Interscience
, pp. 519-564
-
-
Millero, F.J.1
-
31
-
-
0025855018
-
Ultrasonic velocimetry of biological compounds
-
Sarvazyan A.P. Ultrasonic velocimetry of biological compounds. Ann. Rev. Biophys. Biophys. Chem. 20:1991;321-342.
-
(1991)
Ann. Rev. Biophys. Biophys. Chem.
, vol.20
, pp. 321-342
-
-
Sarvazyan, A.P.1
-
33
-
-
0029763453
-
Hydration effects accompanying the substitution of counterions in the ionic atmosphere of poly(rA).poly(rU) and poly(rA).2poly(rU) helices
-
Buckin V.A., Tran H., Morozov V., Marky L.A. Hydration effects accompanying the substitution of counterions in the ionic atmosphere of poly(rA).poly(rU) and poly(rA).2poly(rU) helices. J. Am. Chem. Soc. 118:1996;7033-7039.
-
(1996)
J. Am. Chem. Soc.
, vol.118
, pp. 7033-7039
-
-
Buckin, V.A.1
Tran, H.2
Morozov, V.3
Marky, L.A.4
-
35
-
-
0031477415
-
Volume and compressibility effects in the formation of metal-EDTA complexes
-
Kankia B.I., Funck T., Uedaira H., Buckin V.A. Volume and compressibility effects in the formation of metal-EDTA complexes. J. Sol. Chem. 26:1997;877-888.
-
(1997)
J. Sol. Chem.
, vol.26
, pp. 877-888
-
-
Kankia, B.I.1
Funck, T.2
Uedaira, H.3
Buckin, V.A.4
-
37
-
-
0015700007
-
Ultrasonic measurements with milliliter liquid samples in the 0.5-100 MHz range
-
Eggers F., Funck T. Ultrasonic measurements with milliliter liquid samples in the 0.5-100 MHz range. Rev. Sci. Instrum. 44:1973;969-977.
-
(1973)
Rev. Sci. Instrum.
, vol.44
, pp. 969-977
-
-
Eggers, F.1
Funck, T.2
-
38
-
-
0038914607
-
Broad-band ultrasonic measurement techniques for liquids
-
Eggers F., Kaatze U. Broad-band ultrasonic measurement techniques for liquids. Meas. Sci. Technol. 7:1996;1-19.
-
(1996)
Meas. Sci. Technol.
, vol.7
, pp. 1-19
-
-
Eggers, F.1
Kaatze, U.2
-
39
-
-
0020156572
-
Development of methods of precise ultrasonic measurements in small volumes of liquids
-
Sarvazyan A.P. Development of methods of precise ultrasonic measurements in small volumes of liquids. Ultrasonics. 20:1982;151-154.
-
(1982)
Ultrasonics
, vol.20
, pp. 151-154
-
-
Sarvazyan, A.P.1
-
40
-
-
84969001783
-
The attractions of proteins for small molecules and ions
-
Scatchard G. The attractions of proteins for small molecules and ions. Ann. N. Y. Acad. Sci. 51:1949;660-672.
-
(1949)
Ann. N. Y. Acad. Sci.
, vol.51
, pp. 660-672
-
-
Scatchard, G.1
-
41
-
-
0001384941
-
The velocity of sound in electrolytic solutions
-
Barnatt S. The velocity of sound in electrolytic solutions. J. Chem. Phys. 20:1952;278-279.
-
(1952)
J. Chem. Phys.
, vol.20
, pp. 278-279
-
-
Barnatt, S.1
-
42
-
-
0001054914
-
Standard partial molal compressibilities by ultrasonics. I. Sodium chloride and potassium chloride at 25°C
-
Owen B.B., Simons H.L. Standard partial molal compressibilities by ultrasonics. I. Sodium chloride and potassium chloride at 25°C. J. Phys. Chem. 61:1957;479-482.
-
(1957)
J. Phys. Chem.
, vol.61
, pp. 479-482
-
-
Owen, B.B.1
Simons, H.L.2
-
43
-
-
0001144048
-
Measurement of the amount of bound water by ultrasonic interferometer
-
Shio H., Ogawa T., Yoshihashi H. Measurement of the amount of bound water by ultrasonic interferometer. J. Am. Chem. Soc. 77:1955;4980-4982.
-
(1955)
J. Am. Chem. Soc.
, vol.77
, pp. 4980-4982
-
-
Shio, H.1
Ogawa, T.2
Yoshihashi, H.3
-
45
-
-
0015541536
-
Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism
-
Ivanov V.I., Minchenkova L.E., Schyolkina A.K., Poletayev A.I. Different conformations of double-stranded nucleic acid in solution as revealed by circular dichroism. Biopolymers. 12:1973;89-110.
-
(1973)
Biopolymers
, vol.12
, pp. 89-110
-
-
Ivanov, V.I.1
Minchenkova, L.E.2
Schyolkina, A.K.3
Poletayev, A.I.4
-
46
-
-
0017803456
-
Specific cation effects on conformational transitions of DNA in aqueous solutions
-
Hanlon S., Chan A., Berman S. Specific cation effects on conformational transitions of DNA in aqueous solutions. Biochim. Biophys. Acta. 519:1978;526-536.
-
(1978)
Biochim. Biophys. Acta
, vol.519
, pp. 526-536
-
-
Hanlon, S.1
Chan, A.2
Berman, S.3
-
47
-
-
0028222102
-
Influence of base composition, base sequence, and duplex structure on DNA hydration: Apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25°C
-
Chalikian T.V., Sarvazyan A.P., Plum G.E., Breslauer K.J. Influence of base composition, base sequence, and duplex structure on DNA hydration: apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25°C. Biochemistry. 33:1994;2394-2401.
-
(1994)
Biochemistry
, vol.33
, pp. 2394-2401
-
-
Chalikian, T.V.1
Sarvazyan, A.P.2
Plum, G.E.3
Breslauer, K.J.4
-
49
-
-
0014403595
-
Interaction of polyelectrolytes with simple electrolytes. III. The binding of magnesium ion by deoxyribonycleic acid
-
Skerjanc J., Strauss U.P. Interaction of polyelectrolytes with simple electrolytes. III. The binding of magnesium ion by deoxyribonycleic acid. J. Am. Chem. Soc. 90:1968;3081-3085.
-
(1968)
J. Am. Chem. Soc.
, vol.90
, pp. 3081-3085
-
-
Skerjanc, J.1
Strauss, U.P.2
-
50
-
-
0003398777
-
In: Water in Disperse Systems
-
(eds). B.V. Deryagin, N.V. Churaev and F.D. Ovcharenko, (Kmimiya, Moscow
-
V.A. Buckin, A.P. Sarvazyan and D.P. Kharakoz, in: Water in Disperse Systems, (eds). B.V. Deryagin, N.V. Churaev and F.D. Ovcharenko, Water around biological molecules (Kmimiya, Moscow, 1989) pp. 45-63.
-
(1989)
Water Around Biological Molecules
, pp. 45-63
-
-
Buckin, V.A.1
Sarvazyan, A.P.2
Kharakoz, D.P.3
-
51
-
-
0003424871
-
Experimental studies of DNA-water interaction
-
Buckin V.A. Experimental studies of DNA-water interaction. Mol. Biol. 21:1987;512-525.
-
(1987)
Mol. Biol.
, vol.21
, pp. 512-525
-
-
Buckin, V.A.1
-
52
-
-
37049117469
-
Effect of pressure on ionization equilibria in water at 25°C
-
Lown D.A., Thirsk H.R., Wynne-Jones L. Effect of pressure on ionization equilibria in water at 25°C. Trans. Faraday Soc. 64:1968;2073-2080.
-
(1968)
Trans. Faraday Soc.
, vol.64
, pp. 2073-2080
-
-
Lown, D.A.1
Thirsk, H.R.2
Wynne-Jones, L.3
-
53
-
-
33847804701
-
Isothermal compressibility of aqueous sodium chloride, magnesium chloride, sodium sulfate, and magnesium sulfate solutions from 0 to 45°C at 1 atm
-
Millero F.J., Ward G.K., Lepple F.K., Hoff E.V. Isothermal compressibility of aqueous sodium chloride, magnesium chloride, sodium sulfate, and magnesium sulfate solutions from 0 to 45°C at 1 atm. J. Phys. Chem. 78:1974;1636-1643.
-
(1974)
J. Phys. Chem.
, vol.78
, pp. 1636-1643
-
-
Millero, F.J.1
Ward, G.K.2
Lepple, F.K.3
Hoff, E.V.4
-
54
-
-
0000049113
-
Apparent molal volumes and adiabatic compressibilities of aqueous transition metal chlorides at 25°C
-
Lo Surdo A., Millero F.J. Apparent molal volumes and adiabatic compressibilities of aqueous transition metal chlorides at 25°C. J. Phys. Chem. 84:1980;710-715.
-
(1980)
J. Phys. Chem.
, vol.84
, pp. 710-715
-
-
Lo Surdo, A.1
Millero, F.J.2
-
55
-
-
0002696861
-
Hydration of nucleic bases on dilute aqueous solutions. Apparent molar adiabatic and isothermal compressibilities, apparent molar volumes and their temperature slopes at 25°C
-
Buckin V.A. Hydration of nucleic bases on dilute aqueous solutions. Apparent molar adiabatic and isothermal compressibilities, apparent molar volumes and their temperature slopes at 25°C. Biophys. Chem. 29:1988;283-292.
-
(1988)
Biophys. Chem.
, vol.29
, pp. 283-292
-
-
Buckin, V.A.1
-
57
-
-
0028133296
-
A simple empirical model describing the thermodynamics of hydration of ions of widely varying charges, sizes, and shapes
-
Marcus Y. A simple empirical model describing the thermodynamics of hydration of ions of widely varying charges, sizes, and shapes. Biophys. Chem. 51:1994;111-127.
-
(1994)
Biophys. Chem.
, vol.51
, pp. 111-127
-
-
Marcus, Y.1
-
58
-
-
0033541042
-
6, M=Mg, Ca, Sr, Ba: Evidence of isomeric structures for magnesium
-
6, M=Mg, Ca, Sr, Ba: evidence of isomeric structures for magnesium. J. Am. Chem. Soc. 121:1999;1986-1987.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 1986-1987
-
-
Rodriguez-Cruz, S.E.1
Jockush, R.A.2
Williams, E.R.3
-
59
-
-
0345363149
-
Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing
-
Minasov G., Tereshko V., Egli M. Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing. J. Mol. Biol. 291:1999;83-99.
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 83-99
-
-
Minasov, G.1
Tereshko, V.2
Egli, M.3
-
60
-
-
0026033706
-
Interaction of guanilic acid with the Mg(II), Ca(II), Sr(II), and Ba(II) ions in the crystalline solid and aqueous solution: Evidence for the ribose C2′-endo/anti and C3′-endo/anti conformational changes
-
Tajmir-Riahi H.A. Interaction of guanilic acid with the Mg(II), Ca(II), Sr(II), and Ba(II) ions in the crystalline solid and aqueous solution: evidence for the ribose C2′-endo/anti and C3′-endo/anti conformational changes. Biopolymers. 31:1991;101-108.
-
(1991)
Biopolymers
, vol.31
, pp. 101-108
-
-
Tajmir-Riahi, H.A.1
-
61
-
-
0345055328
-
DNA bending by small, mobile multivalent cations
-
Rouzina I., Bloomfield V.A. DNA bending by small, mobile multivalent cations. Biophys. J. 74:1998;3152-3164.
-
(1998)
Biophys. J.
, vol.74
, pp. 3152-3164
-
-
Rouzina, I.1
Bloomfield, V.A.2
|