Evolutionary complementation for polymerase II CTD function

Yeast

Volumn 16, Issue 1, 2000, Pages 57-64

  Stiller, John W ^a   Mcconaughy, Betty L ^a   Hall, Benjamin D ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

CTD; Evolution; Mastigamoeba; RNA polymerase II; Saccharomyces

Indexed keywords

ALANINE; PROTEIN DISULFIDE ISOMERASE; RNA POLYMERASE II; THREONINE;

AMINO ACID SUBSTITUTION; ARTICLE; CARBOXY TERMINAL SEQUENCE; CELL TRANSFORMATION; CONTROLLED STUDY; ENZYME SUBUNIT; EVOLUTION; GENE CONSTRUCT; GENETIC COMPLEMENTATION; NONHUMAN; NUTRIENT; PRIORITY JOURNAL; PROTEIN DOMAIN; TEMPERATURE; YEAST;

AMOEBA; ANIMALS; EVOLUTION; PHOSPHORYLATION; REPETITIVE SEQUENCES, AMINO ACID; RNA POLYMERASE II; SACCHAROMYCES CEREVISIAE; STRUCTURE-ACTIVITY RELATIONSHIP; TEMPERATURE;

ANIMALIA; EUKARYOTA; MASTIGAMOEBA; MASTIGAMOEBA INVERTENS; PROTISTA; SACCHAROMYCES;

EID: 0034650723     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0061(20000115)16:1<57::AID-YEA509>3.0.CO;2-E     Document Type: Article

References (44)

1. Biderre C, Pages M, Metenier G, Canning EU, Vivares CP. 1995. Evidence for the smallest nuclear genome (2.9 Mb) in the microsporidian Encephalitozoon cuniculi. Mol Biochem Parasitol 74: 229-231.
2. Boeke JD, Trueheart J, Natsoulis G. Fink GR. 1987. 5-Fluoro-orotic acid as a selective agent in yeast molecular genetics. Methods Enzymol 154: 164-175.
3. Carlson M. 1997. Genetics of transcriptional regulation in yeast: connections to the RNA polymerase II CTD. Ann Rev Cell Dev Biol 13: 1-23.
4. Corden JL. 1990. Tails of polymerase II. TIBS 15: 383-387.
5. Dubois MF, Bensaude O. 1998. Phosphorylation of RNA polymerase II C-terminal domain (CTD): a new control for heat-shock gene expression? Cell Stress Chaparones 3: 147-151.
6. Dubois MF, Marshall NF, Nguyen VT, Dahmus GK, Bonnet F, Dahmus ME, Bensaude O. 1999. Heat shock of HeLa cells inactivates a nuclear protein phosphotase specific for dephosphorylation of the C-terminal domain of RNA polymerase II. Nucleic Acids Rex 27: 1338-1344.
7. Dubois MF, Vincent M, Vigneron M, Adamczewski J, Egly JM, Bensaude O. 1997. Heat-shock inactivation of the TFIIH-associated kinase and change in the phosphorylation sites on the C-terminal domain of RNA polymerase II. Nucleic Acids Res 25: 694-700.
8. Egyházi E, Ossoinak A, Lee JM, Greenleaf AL, Mäkelä TP, Pigon A. 1998. Heat-shock-specific phosphorylation and transcriptional activity of RNA polymerase II. Exper Cell Res 242: 211-221.
9. Evers R, Hammer A, Kock J, Waldemar J, Borst P, Mémet S, Cornelissen AWCA. 1989a. Trypanosoma brucei contains two RNA polymerase II largest subunit genes with an altered C-terminal domain. Cell 56: 585-597.
10. Evers R, Hammer A, Cornelissen AWCA. 1989b. Unusual C-terminal domain of the largest subunit of RNA polymerase II of Crithidia fasciculata. Nucleic Acids Res 17: 3403-3413.
11. Giesecke H, Barale JC. Langsley G, Cornelissen AW. 1991. The C-terminal domain of RNA polymerase II of the malaria parasite Plasmodium berghei. Biochem Biophys Res Commun 180: 1350-1355.
12. Greenleaf A. 1993. Positive patches and negative noodles: linking RNA processing to trancription. Trends Biochem Sci 18: 117-119.
13. Hampsey MH. 1998. Molecular genetics of the RNA polymerase II general transcriptional machinery. Micro Molec Biol Rev 62: 465 503.
14. Hirose Y, Manley J. 1998. RNA polymerase II is an essential mRNA polyadenylation factor. Nature 395: 93-96.
15. Hirt RP, Logsdon JM, Healy B, Dorey MW, Doolittle WF, Emblcy TM 1999. Microsporidia are related to fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proc Natl Acad Sci U S A 96: 580 585.
16. Ito H, Fukuda Y, Murata K, Kimura A. 1983. Transformation of intact yeast cells treated with alkali cations. J Bacteriol 153: 163-168.
17. Jokerst RS, Weeks JR, Zehring WA, Greenleaf AL. 1989. Analysis of the gene ecoding the largest subunit of RNA polymerase II in Drosophila. Mol Gen Genet 215: 266-275.
18. Kang ME, Dahmus ME. 1995. The unique C-terminal domain of RNA polymerase II and its role in transcription. In Advances in Enzymology and Related Areas of Molecular Biology, Vol. II. Meister A (ed). Wiley: New York; 41 77.
19. Kim Y-J, Björklund S, Li Y, Sayre MH, Kornberg RD. 1994. A multiprotcin mediator of transcriptional activation and its interaction with the C-terminal repeat domain of RNA polymerase II. Cell 77: 599-608.
20. Lam TY, Chan L, Yip P, Siu CH. 1992. The largest subunit of RNA polymerase II in Dictyostelium: conservation of the unique tail domain and gene expression. Biochem Cell Biol 70: 792-799.
21. Li W-B, Bzik DJ, Gu H, Tanaka M, Fox BA, Inselburg J. 1989. An enlarged largest subunit of Plasmodium falciparum RNA polymerase II defines conserved and variable RNA polymerase domains. Nucleic Acids Res 17: 9621 9636.
22. Laio S-M, Taylor ICA, Kingston RE, Young RA. 1991. RNA polymerase II carboxy-terminal domain contributes to the response to multiple acidic activators in vitro. Genes Dev 5: 2431-2440.
23. Myer VE, Young RA. 1998. RNA polymerase II holoenzymes and subcomplexes. J Biol Chem 273: 27757-27760.
24. Nonet M, Sweetser D, Young RA. 1987. Functional redundancy and structural polymorphism in the large subunit of RNA polymerase II. Cell 50: 909-915.
25. Nonet ML, Young RA. 1989. Intragenic and extragenic suppressors of mutations in the heptapeptide repeat domain of Saccharomyces cerevixiae RNA polymerase II. Genetics 123: 715-724.
26. Okamoto H, Sheline CT, Corden JL, Jones KA, Peterlin BM. 1996. trans-Activation by human immunodeficiency virus Tat protein requires the C-terminal domain of RNA polymerase II. Proc Natl Acad Sci U S A 93: 11575-11579.
27. Otero G, Fellows J, Li Y, de Bizemont T, Dirac AMG, Gustafsson CM, Erdjument-Bromage J, Tempst P, Svejstrup JQ. 1999. Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. Mol Cell 3: 109 118.
28. Patturajan M, Schulte RJ, Sefton BM, Berezney R, Vincent M, Bensaude O, Warren SL, Corden JL. 1998. Growth-related changes in phosphorylation of yeast RNA polymerase II. J Biol Chem 273; 4689-4694.
29. Peyretaillade E, Biderre C, Peyret P, Duffieux F, Metenier G, Gouy M, Michot B, Vivares CP. 1998. Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core. Nucleic Acids Res 26: 3513-3520.
30. Pühler G, Leffers H. Gropp F, Palm P, Klenk H-P, Lottspeich F, Garret RA, Zillig W. 1989. Archae-bacterial DNA-dependent RNA polymerascs testify to the evolution of the eukaryotic nuclear genome. Proc Natl Acad Sci U S A 86: 4569-4573.
31. Quon DVK, Delgadillo MG, Johnson PJ. 1996. Transcription in the early diverging eukaryotic Trichonwnas vaginalis: an unusual RNA polymerase II and α-amanitin-resistant transcription of protein-coding genes. J Mol Evol 43: 253-262.
32. Scafe C, Chao D, Lopes J, Hirsch JP, Henry S. Young RA. 1990. RNA polymerase II C-terminal repeat influences response to transcriptional enhancer signals. Nature 347: 491-494.
33. Seibert PD, Chenchik A, Kellogg DE, Lukyanov KA, Lukyanov SA. 1995. An improved PCR method for walking in uncloned genomic DNA. Nucleic Adds Res 23: 1087 1088.
34. Shilatifard A. 1998. The RNA polymerase II general elongation complex. J Biol Chem 379: 27-31.
35. Smith JL, Levin JR, Ingles CJ, Agabian N. 1989. In trypanosomes the homologue of the largest subunit of RNA polymerase II is encoded by two genes and has a highly unusual C-terminal domain structure. Cell 56: 815-827.
36. Steinmetz EJ. 1997. Pre-mRNA processing and the CTD of RNA polymerase II: the tail that wags the dog? Cell 89: 491-494.
37. Stiller JW, Duffield ECS, Hall BD. 1998. Amitochondriate amoebae and the evolution of DNA-dependent RNA polymerase II. Proc Null Acad Sci USA 95: 11769-11774.
38. Stiller JW, Hall BD. 1998. Sequences of the largest subunit of RNA polymerase II from two red algae and their implications for rhodophyte evolution. J Phycol 34: 857-864.
39. Svejstrup JQ, Li Y, Fellows J, Gnatt A, Bjorklund S, Kornberg RD. 1997. Evidence for a mediator cycle at the initiation of transcription. Proc Natl Acad Sci USA 94: 6075-6078.
40. Trigon S, Serizawa H, Weliky Conaway J, Conaway RC, Jackson SP, Morange M. 1998. Characterization of the residues phosphorylated in vitro by different C-terminal domain kinases. J Biol Chem 273: 6769 6775.
41. West ML, Corden JL. 1995. Construction and analysis of yeast RNA polymerase II CTD deletion and substitution mutants. Genetics 140: 1223-1233.
42. Wilson JC, Chao DM, Imbalzano AN, Schnitzler GR, Kingston RE. Young RA. 1996. RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling. Cell 84: 235-244.
43. Yuryev A, Corden JL. 1996. Suppression analysis reveals a functional difference between the serines in positions two and five in the consensus sequence of the C-terminal domain of yeast RNA polymerase II. Genetics 14: 661-671.
44. Zhang J, Corden JL. 1991. Identification of phosphorylation sites in the repetitive carboxyl-terminal domain of the mouse RNA polymerase II largest subunit. J Biol Chem 266: 2290 2296.