Characterization of the binding interface between the E-domain of Staphylococcal protein A and an antibody Fv-fragment

Biochemistry

Volumn 39, Issue 1, 2000, Pages 26-36

  Meininger, David P ^a   Rance, Mark ^b   Starovasnik, Melissa A ^a   Fairbrother, Wayne J ^a   Skelton, Nicholas J ^a  

^a GENENTECH INC   (United States)

^b UNIVERSITY OF CINCINNATI COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN FC FRAGMENT; IMMUNOGLOBULIN HEAVY CHAIN; STAPHYLOCOCCUS PROTEIN A;

ARTICLE; CELL SURFACE; COMPLEX FORMATION; HYDROPHILICITY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; STAPHYLOCOCCUS AUREUS; SURFACE PROPERTY;

AMINO ACID SEQUENCE; BINDING SITES, ANTIBODY; GENETIC VECTORS; HUMANS; IMMUNOGLOBULIN FRAGMENTS; IMMUNOGLOBULIN HEAVY CHAINS; IMMUNOGLOBULIN VARIABLE REGION; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE MAPPING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RECEPTOR, ERBB-2; STAPHYLOCOCCAL PROTEIN A; THERMODYNAMICS;

EID: 0034635154     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9920174     Document Type: Article

References (63)

1. Uhlén, M., Guss, B., Nilsson, B., Gatenbeck, S., Philipson, L., and Lindberg, M. (1984) J. Biol. Chem. 259, 1695-1702.
2. Nardella, F. A., Teller, D. C., Barber, C. V., and Mannik, M. (1985) J. Exp. Med. 162, 1811-24.
3. Vidal, M. A., and Conde, F. P. (1985) J. Immunol. 135, 1232-1238.
4. Sasso, E. H., Silverman, G. J., and Mannik, M. (1989) J. Immunol. 142, 2778-2783.
5. Sasso, E. H., Silverman, G. J., and Mannik, M. (1991) J. Immunol. 147, 1877-1883.
6. Roben, P. W., Salem, A. N., and Silverman, G. J. (1995) J. Immunol. 154, 6437-6445.
7. Jansson, B., Uhlén, M., and Nygren, P.-A. (1998) FEMS Immunol. Med. Microbiol. 20, 69-78.
8. Romagnani, S., Giudizi, M. G., Del Prete, G., Maggi, E., Biagiotti, R., Almerigogna, F., and Ricci, M. (1982) J. Immunol. 129, 596-602.
9. Kozlowski, L. M., Soulika, A. M., Silverman, G. J., Lambris, J. D., and Levinson, A. I. (1996) J. Immunol. 157, 1200-1206.
10. Kozlowski, L. M., Li, W., Goldschmidt, M., and Levinson, A. I. (1998) J. Immunol. 160, 5246-5252.
11. Starovasnik, M. A., Skelton, N. J., O'Connell, M. P., Kelley, R. F., Reilly, D., and Fairbrother, W. J. (1996) Biochemistry 35, 15558-15569.
12. Gouda, H., Torigoe, H., Saito, A., Sato, M., Arata, Y., and Shimada, I. (1992) Biochemistry 31, 9665-9672.
13. Tashiro, M., Tejero, R., Zimmerman, D. E., Celda, B., Nilsson, B., and Montelione, G. T. (1997) J. Mol. Biol. 272, 573-590.
14. Nilsson, B., Moks, T., Jansson, B., Abrahmsén, L., Elmblad, A., Holmgren, E., Henrichson, C., Jones, T. A., and Uhlén, M. (1987) Protein Eng. 1, 107-113.
15. Deisenhofer, J. (1981) Biochemistry 20, 2361-2370.
16. Starovasnik, M. A., O'Connell, M. P., Fairbrother, W. J., and Kelley, R. F. (1999) Protein Sci. 8, 1423-1431.
17. Young, W. W., Tamura, Y., Wolock, D. M., and Fox, J. W. (1984) J. Immunol. 133, 3163-3166.
18. Riechmann, L., and Davies, J. (1995) J. Biomol. NMR 6, 141-152.
19. Hillson, J. L., Karr, N. S., Oppliger, I. R., Mannik, M., and Sasso, E. H. (1993) J. Exp. Med. 178, 331-336.
20. Sasano, M., Burton, D. R., and Silverman, G. J. (1993) J. Immunol. 151, 5822-5839.
21. Hakoda, M., Hayashimoto, S., Yamanaka, H., Terai, C., Kamatani, N., and Kashiwazaki, S. (1994) Clin. Immunol. Immunopathol. 72, 394-401.
22. Hakoda, M., Kamatani, N., Hayashimoto-Kurumada, S., Silverman, G. J., Yamanaka, H., Terai, C., and Kashiwazaki, S. (1996) J. Immunol. 157, 2976-2981.
23. Randen, I., Potter, K. N., Li, Y., Thompson, K. M., Pascual, V., Førre, Ø., Natvig, J. B., and Capra, J. D. (1993) Eur. J. Immunol. 23, 2682-2686.
24. Potter, K. N., Li, Y., and Capra, J. D. (1996) J. Immunol. 157, 2982-2988.
25. Carter, P., Presta, L., Gorman, C. M., Ridgway, J. B. B., Henner, D., Wong, W. L. T., Rowland, A. M., Kotts, C., Carver, M. E., and Shepard, H. M. (1992) Proc. Natl. Acad. Sci. U.S.A. 89, 4285-4289.
26. Chang, C. N., Rey, M., Bochner, B., Heyneker, H., and Gray, G. (1987) Gene 55, 189-196.
27. Reilly, D., and Fairbrother, W. J. (1994) J. Biomol. NMR 4, 459-462.
28. Wishart, D. S., Bigam, C. G., Yao, J., Abildgaard, F., Dyson, H. J., Oldfield, E., Markley, J. L., and Sykes, B. D. (1995) J. Biomol. NMR 6, 135-140.
29. Cavanagh, J., Fairbrother, W. J., Palmer, A. G., III, and Skelton, N. J. (1995) Protein NMR spectroscopy: principles and practice. Academic Press, San Diego.
30. Marion, D., Ikura, M., Tschudin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
31. Grzesiek, S., and Bax, A. (1993) J. Am. Chem. Soc. 115, 12593-12594.
32. Mori, S., Abeygunawardana, C., O'Neil Johnson, M., and van Zijl, P. C. M. (1995) J. Magn. Reson. B 108, 94-98.
33. Driscoll, P. C., Clore, G. M., Beress, L., and Gronenborn, A. M. (1989) Biochemistry 28, 2178-2187.
34. Talluri, S., and Wagner, G. (1996) J. Magn. Reson. B 112, 200-205.
35. Kay, L. E., Keifer, P., and Saarinen, T. (1992) J. Am. Chem. Soc. 114, 443-450.
36. Muhandiram, D. R., and Kay, L. E. (1994) J. Magn. Reson. B 103, 203-216.
37. Pervushin, K., Riek, R., Wider, G., and Wüthrich, K. (1997) Proc. Natl. Acad. Sci. U.S.A. 94.
38. Salzmann, M., Pervushin, K., Wider, G., Senn, H., and Wüthrich, K. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 13585-13590.
39. Loria, J. P., Rance, M., and Palmer, A. G., III. (1999) J. Magn. Reson. 141, 180-184.
40. Shaka, A. J., Keeler, J., Frenkiel, T., and Freeman, R. (1983) J. Magn. Reson. 52, 335-338.
41. Shaka, A. J., Barker, P. B., and Freeman, R. (1985) J. Magn. Reson. 64, 547-552.
42. McCoy, M. A., and Mueller, L. (1992) J. Am. Chem. Soc. 114, 2108-2112.
43. McCoy, M. A., and Mueller, L. (1992) J. Magn. Reson. 98, 674-679.
44. Wishart, D. S., and Sykes, B. D. (1994) J. Biomol. NMR 4, 171-180.
45. Eigenbrot, C., Randal, M., Presta, L., Carter, P., and Kossiakoff, A. A. (1993) J. Mol. Biol. 229, 969-995.
46. Freund, C., Ross, A., Plückthun, A., and Holak, T. A. (1994) Biochemistry 33, 3296-3303.
47. Takahashi, H., Suzuki, E., Shimada, I., and Arata, Y. (1992) Biochemistry 31, 2464-2468.
48. Chen, Y., Reizer, J., Saier, M. H., Jr., Fairbrother, W. J., and Wright, P. E. (1993) Biochemistry 32, 32-37.
49. van Nuland, N. A. J., Kroon, G. J. A., Dijkstra, K., Wolters, G. K., Scheek, R. M., and Robillard, G. T. (1993) FEBS Lett 315, 11-15.
50. Farmer, B. T., II, Constantine, K. L., Goldfarb, V., Friedrichs, M. S., Wittekind, M., Yanchunas, J. J., Robertson, J. G., and Mueller, L. (1996) Nat. Struct. Biol. 3, 995-997.
51. Spitzfaden, C., Weber, H. P., Braun, W., Kallen, J., Wider, G., Widmer, H., Walkinshaw, M. D., and Wüthrich, K. (1992) FEBS Lett 300, 291-300.
52. Kabat, E. A., Wu, T. T., Perry, H. M., Gottesman, K. S., and Foeller, C. (1991) Sequences of proteins of immunological interest, 5th ed., Public Health Service, NIH, Washington DC.
53. Kelley, R. F., and O'Connell, M. P. (1993) Biochemistry 32, 6828-6835.
54. Tomlinson, I. M., Walter, G., Marks, J. D., Llewelyn, M. B., and Winter, G. (1992) J. Mol. Biol. 227, 776-798.
55. Bax, A., Ikura, M., Kay, L. E., Torchia, D. A., and Tschudin, R. (1990) J. Magn. Reson. 86, 304-318.
56. Grzesiek, S., and Bax, A. (1992) J. Magn. Reson. 96, 432-440.
57. Montelione, G. T., Lyons, B. A., Emerson, D. A., and Tashiro, M. (1992) J. Am. Chem. Soc. 114, 10974-10975.
58. Logan, T. M., Olejniczak, E. T., Xu, R. X., and Fesik, S. W. (1993) J. Biomol. NMR 3, 225-231.
59. Yamazaki, T., Lee, W., Revington, M., Mattiello, D. L., Dahlquist, F. W., Arrowsmith, C. H., and Kay, L. E. (1994) J. Am. Chem. Soc. 116.
60. Yamazaki, T., Lee, W., Arrowsmith, C. H., Muhandiram, D. R., and Kay, L. E. (1994) J. Am. Chem. Soc. 116, 11655-11666.
61. Clubb, R. T., Thanabal, V., and Wagner, G. (1992) J. Magn. Reson. 97, 213-217.
62. Marion, D., Kay, L. E., Sparks, S. W., Torchia, D. A., and Bax, A. (1989) J. Am. Chem. Soc. 111, 1515-1517.
63. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950.