Recruitment of a double bond isomerase to serve as a reductive dehalogenase during biodegradation of pentachlorophenol

Biochemistry

Volumn 39, Issue 18, 2000, Pages 5303-5311

  Anandarajah, Kandiah ^a   Kiefer Jr , Philip M ^a   Donohoe, Bryon S ^a   Copley, Shelley D ^a  

^a UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETONE; BACTERIAL ENZYME; ISOMERASE; MALEYLACETATE REDUCTASE; PENTACHLOROPHENOL; PHENYLALANINE; TETRACHLOROHYDROQUINONE; TYROSINE;

ARTICLE; BIODEGRADATION; CATABOLISM; CATALYSIS; DEHALOGENATION; ENZYME ACTIVE SITE; ENZYME ANALYSIS; ENZYME CONFORMATION; ENZYME KINETICS; ENZYME METABOLISM; ISOMERISM; NONHUMAN; PRIORITY JOURNAL; SPHINGOMONAS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BIODEGRADATION, ENVIRONMENTAL; CIS-TRANS-ISOMERASES; EVOLUTION, MOLECULAR; GLUTATHIONE; GLUTATHIONE TRANSFERASE; HYDROLASES; ISOMERASES; KINETICS; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PENTACHLOROPHENOL; PHENYLALANINE; PSEUDOMONAS; SEQUENCE ALIGNMENT; SPHINGOMONAS; TYROSINE;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; SPHINGOBIUM CHLOROPHENOLICUM; SPHINGOMONAS;

EID: 0034625156     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9923813     Document Type: Article

References (38)

1. Jensen, R. A. (1976) Annu. Rev. Microbiol. 30, 409-425.
2. Petsko, G. A., Kenyon, G. L., Gerlt, J. A., Ringe, D., and Kozarich, J. W. (1993) Trends Biochem. Sci. 18, 372.
3. O'Brien, P. J., and Herschlag, D. (1999) Chem. Biol. 6, R91-R105.
4. Cline, R. E., Hill, R. H., Phillips, D. L., and Needham, L. L. (1989) Arch. Environ. Contam. Toxicol. 18, 475-481.
5. Xun, L., and Orser, C. S. (1991) J. Bacteriol. 173, 4447-4453.
6. Xun, L., Topp, E., and Orser, C. S. (1992) J. Bacteriol. 174, 8003-8007.
7. Xu, L., Lawson, S. L., Resing, K., Babbitt, P. C., and Copley, S. D. (1999) Biochemistry 38, 7659-7669.
8. McCarthy, D. L., Navarrete, S., Willett, W. S., Babbitt, P. C., and Copley, S. D. (1996) Biochemistry 35, 14634-14642.
9. McCarthy, D. L., Louie, D. F., and Copley, S. D. (1997) J. Am. Chem. Soc. 119, 11337-11338.
10. Willett, W. S., and Copley, S. D. (1996) Chem. Biol. 3, 851-857.
11. Board, P. G., Baker, R. T., Chelvanayagam, G., and Jermiin, L. S. (1997) Biochem. J. 328, 929-935.
12. Masai, E., Katayama, Y., Kubota, S., Kawai, S., Yamasaki, M., and Morohoshi, N. (1993) FEBS Lett. 323, 135-140.
13. Seltzer, S., and Lin, M. (1979) J. Am. Chem. Soc. 101, 3091-3097.
14. Leisinger, T., Bader, R., Hermann, R., Schmid-Appert, M., and Vuilleumier, S. (1994) Biodegradation 5, 237-248.
15. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
16. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680.
17. Bailey, T. L., and Elkan, C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. in Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp 28-36, AAAI Press, Menlo Park, CA.
18. Fowler, J., and Seltzer, S. (1970) J. Org. Chem. 35, 3529-3532.
19. Singh, R. (1968) Phytochemistry 7, 1503-1508.
20. Brown, G. W., James, J., Hendersen, R. J., Thomas, W. N., Robinson, R. O., Thompson, A. L., Brown, E., and Brown, S. G. (1966) Science 153, 1653-1654.
21. Sawaki, S., and Yamada, K. (1966) Nature 210, 66.
22. Crawford, R. L., and Frick, T. D. (1977) Appl. Environ. Microbiol. 34, 170-174.
23. Fernández-Cañón, J. M., and Peñalva, M. A. (1998) J. Biol. Chem. 273, 329-337.
24. Fernández-Cañon, J. M., Hejna, J., Reifsteck, C., Olson, S., and Grompe, M. (1999) Genomics 58, 263-269.
25. Miyauchi, K., Suh, S. K., Nagata, Y., and Takagi, M. (1998) J. Bacteriol. 180, 1354-1359.
26. Caccuri, A. M., Antonini, G., Nicotra, M., Battistoni, A., Lo Bello, M., Board, P. G., Parker, M. W., and Ricci, G. (1997) J. Biol. Chem. 272, 29681-29686.
27. Board, P. G., Coggan, M., Wilce, M. C. J., and Parker, M. W. (1995) Biochem. J. 311, 247-250.
28. Vuilleumier, S., and Leisinger, T. (1996) Eur. J. Biochem. 239, 410-417.
29. Armstrong, R. N. (1997) Chem. Res. Toxicol. 10, 2-18.
30. Seltzer, S. (1973) J. Biol. Chem. 248, 215-222.
31. Tong, Z., Board, P. G., and Anders, M. W. (1998) Biochem. J. 331, 371-374.
32. O'Brien, P. J., and Herschlag, D. (1998) J. Am. Chem. Soc. 120, 12369-12370.
33. Palmer, D. R. J., Garrett, J. B., Sharma, V., Meganathan, R., Babbitt, P. C., and Gerlt, J. A. (1999) Biochemistry 38, 4252-4258.
34. Babbitt, P. C., Huisman, G. W., Kolter, R., Ringe, D., Petsko, G. A., Kenyon, G. L., and Gerlt, J. A. (1995) Science 267, 1159-1161.
35. Babbitt, P. C., Hasson, M., Wedekind, J. E., Palmer, D. J., Lies, M. A., Reed, G. H., Rayment, I., Ringe, D., Kenyon, G. L., and Gerlt, J. A. (1996) Biochemistry 35, 16489-16501.
36. Siuda, J. F., and DeBernardis, J. F. (1973) Lloydia 36, 107-143.
37. McCarthy, D. L., Claude, A., and Copley, S. D. (1997) Appl. Environ. Microbiol. 63, 1883-1888.
38. Hagedorn, S. R., Bradley, G., and Chapman, P. J. (1985) J. Bacteriol. 163, 640-647.