Structural and functional comparative study of the complexes formed by viral φ29, Nf and GA-1 SSB proteins with DNA

Journal of Molecular Biology

Volumn 296, Issue 4, 2000, Pages 989-999

  Gascón, Irene ^a   Gutiérrez, Crisanto ^a   Salas, Margarita ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

Author keywords

Bacteriophages 29, Nf, GA 1; DNA binding; Fluorescence quenching; Nucleoprotein complex; SSB

Indexed keywords

MONOMER; NUCLEOPROTEIN; SINGLE STRANDED DNA BINDING PROTEIN;

ARTICLE; BACTERIOPHAGE; BINDING SITE; DNA PROTEIN COMPLEX; DNA REPLICATION; GENE AMPLIFICATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; STRUCTURE ANALYSIS;

EID: 0034598943     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3521     Document Type: Article

References (46)

1. Fluorescence studies of the complex formation between the gene 5 protein of bacteriophage M13 and polynucleotides
2. Protease-sensitive transfection of Bacillus subtilis with bacteriophage GA-1 DNA: A probable case of heterologous transfection
3. The uvsY recombination protein of bacteriophage T4 forms hexamers in the presence and absence of single-stranded DNA
4. Corrections for light absorption in fluorescence studies of protein-ligand interactions
5. Terminal protein-primed DNA amplification
6. An RNA polymerase II transcription factor binds to an upstream element in the adenovirus major late promoter
7. Single-stranded DNA binding proteins required for DNA replication
8. Escherichia coli single-strand binding protein organizes single-stranded DNA in nucleosome-like units
9. Single-stranded-DNA-binding proteins from human mitochondria and Escherichia coli have analogous physicochemical properties
10. The phage T4-coded DNA replication helicase (gp41) forms a hexamer upon activation by nucleoside triphosphate
11. Secondary structure of the single-stranded DNA binding protein encoded by filamentous phage Pf3 as determined by NMR
12. DNA strand exchanges
13. Visualization of SSB-ssDNA complexes active in the assembly of stable recA-DNA filaments
14. Mechanism of stimulation of DNA replication by bacteriophage φ29 single-stranded DNA-binding protein p5
15. Analysis of replicative intermediates produced during bacteriophage φ29 DNA replication in vitro
16. Identification and characterization of a single-stranded DNA-binding protein from the archaeon Methanococcus jannaschii
17. DNA-binding proteins
18. Single-stranded DNA-binding proteins
19. Cooperative and noncooperative binding of protein ligands to nucleic acid lattices: Experimental approaches to the determination of thermodynamic parameters
20. Purification of bacteriophage φ29 DNA polymerase
21. Thermodynamic methods for model-independent determination of equilibrium binding isotherms for protein-DNA interactions: Spectroscopic approaches to monitor binding
22. Escherichia coli single-stranded DNA-binding protein. Multiple DNA-binding modes and cooperativities
23. ATP-dependent assembly of double hexamers of SV40 T antigen at the viral origin of DNA replication
24. Characterization of the oligomeric states of RecA protein: Monomeric RecA protein can form a nucleoprotein filament
25. Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels
26. Theoretical aspects of DNA-protein interactions: Co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice
27. The single-stranded DNA binding protein of Escherichia coli
28. Suppressor-sensitive mutants and genetic map of Bacillus subtilis bacteriophage φ29
29. Overproduction and purification of protein p6 of Bacillus subtilis phage φ29: Role in the initiation of DNA replication
30. Oligomeric structure of bacteriophage T7 DNA primase/helicase proteins
31. Molecular phylogeny of φ29-like phages and their evolutionary relatedness to other protein-primed replicating phages and other phages hosted by Gram-positive bacteria
32. Initiation of phage φ29 DNA replication in vitro: Formation of a covalent complex between the terminal protein p3 and 5'-dAMP
33. The dnaB gene product of Escherichia coli. I. Purification, homogeneity, and physical properties
34. Protein-priming of DNA replication
35. Mechanism for priming DNA synthesis
36. Thermodynamics and kinetics of co-operative protein-nucleic acid binding. I. General aspects of analysis of data
37. Complex formation between phage φ29 single-stranded. DNA binding protein and DNA
38. Helixdestabilizing activity of φ29 single-stranded DNA binding protein: Effect on the elongation rate during strand displacement DNA replication
39. Electron microscopy of chromatin
40. Co-operativity value of DNA-RecA protein interaction. Influence of the protein quaternary structure on the binding analysis
41. Replication protein A: A heterotrimeric, single-stranded DNA-binding protein required for eukaryotic DNA metabolism
42. Comparative studies on the small Bacillus bacteriophages
43. Functional domains in the bacteriophage φ29 terminal protein for interaction with the φ29 DNA polymerase and with DNA