Phylogenetic relationships among loliginid squids (Cephalopoda: Myopsida) based on analyses of multiple data sets

Zoological Journal of the Linnean Society

Volumn 130, Issue 4, 2000, Pages 603-633

  Anderson, Frank E ^a,b  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

^b SMITHSONIAN INSTITUTION   (United States)

Author keywords

16S cytochrome c oxidase I; Allozymes; Loliginidae; Maximum parsimony; Morphology; Phytogeny; Total evidence

Indexed keywords

CEPHALOPODA; LOLIGINIDAE; LOLIGO; LOLIGO FORBESI; LOLIGO REYNAUDII; LOLIOLUS; LOLLIGUNCULA; SEPIOTEUTHIS; UROTEUTHIS;

EID: 0034557759     PISSN: 00244082     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1096-3642.2000.tb02203.x     Document Type: Article

References (71)

1. Adam W. 1950. Notes sur les cephalopodes, XXII. Deux nouvelles espèces de la côte africaine occidentale. Bulletin du Institut Royal des Sciences Naturelles de Belgique 26: 1-9.
2. Adam W. 1954. Cephalopoda, IV. Céphalopodes à l'exclusion des genres Sepia, Sepiella et Sepioteuthis. Siboga-Expeditie 55c: 123-198.
3. Alexeyev DO. 1992. The systematic position of bioluminescent squids of family Loliginidae (Cephalopoda, Myopsida) (in Russian). Zoologicheskii Zhurnal 71: 12-23.
4. Anderson FE. 1996. Preliminary cladistic analyses of relationships among loliginid squids (Cephalopoda: Myopsida) based on morphological data. American Malacological Bulletin 12: 113-128.
5. Anderson FE. 2000. Phylogeny and historical biogeography of the loliginid squids (Mollusca: Cephalopoda) based on mitochondrial DNA sequence data. Molecular Phylogenetics and Evolution 15: 191-214.
6. Berlocher SH, Swofford DL. 1997. Search for phylogenetic trees under the frequency parsimony criterion: an approximation using generalized parsimony. Systematic Biology 46: 211-214.
7. Berry SS. 1911. A note on the genus Lolliguncula. Proceedings of the National Academy of Sciences of Philadelphia, 100-105.
8. Berry SS. 1929. Loliolopsis chiroctes, a new genus and species of squid from the Gulf of California. Transactions of the San Diego Society of Natural History 5: 263-282.
9. Berthold T, Engeser T. 1987. Phylogenetic analysis and systematization of the Cephalopoda (Mollusca). Verhandlungen des Naturwissenschaftlichen Vereins in Hamburg 29: 187-220.
10. Bonnaud L, Boucher-Rodoni R, Monnerot M. 1994. Phytogeny of decapod cephalopods based on partial 16S rDNA nucleotide sequences. C. R. Acad. Sci. (III) 317: 581-588.
11. Brakoniecki TF. 1980. Lolliguncula tydeus, a new species of squid (Cephalopoda: Myopsida) from the Pacific coast of Central America. Bulletin of Marine Science 30: 424-430.
12. Brakoniecki TF. 1984. A full description of Loligo sanpaulensis Brakoniecki, 1984 and a redescription of Loligo gahi d'Orbigny, 1835, two species from the southwest Atlantic. Bulletin of Marine Science 34: 435-448.
13. Brakoniecki TF. 1986. A generic revision of the family Loliginidae (Cephalopoda: Myopsida) based primarily on the comparative morphology of the hectocotylus. Unpublished D. Phil. Thesis, The University of Miami, Coral Gables, Florida.
14. Brakoniecki TF. 1996. A revision of the genus Pickfordiateuthis Voss, 1953 (Cephalopoda: Myopsida). Bulletin of Marine Science 58: 9-28.
15. Brakoniecki TF, Roper CFE. 1985. Lolliguncula argus, a new species of loliginid squid from the tropical eastern Pacific. Proceedings of the Biological Society of Washington 98: 47-53.
16. Bremer K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
17. Brierley AS, Thorpe JP. 1994. Biochemical genetic evidence supporting the taxonomic separation of Loligo gahi from the genus Loligo. Antarctic Science 6: 143-148.
18. Brierley AS, Clarke MR, Thorpe JP. 1996. Ctenopteryx sicula, a bathypelagic loliginid squid? American Malacological Bulletin 12: 137-144.
19. Brierley AS, Allcock AL, Clarke MR, Thorpe JP. 1997. Biochemical genetic evidence support the taxonomic separation of Loligo edulis and Loligo chinensis (Cephalopoda: Teuthoidea) from the genus Loligo. Marine Biology 127: 97-104.
20. Burgess LA. 1967. Loliolus rhomboidalis, a new species of loliginid squid from the Indian Ocean. Bulletin of Marine Science 17: 319-329.
21. Cohen AC. 1976. The systematics and distribution of Loligo in the western North Atlantic, with description of two new species. Malacologia 15: 229-367.
22. Cunningham CW. 1997. Can three incongruence tests predict when data should be combined? Molecular Biology and Evolution 14: 733-740.
23. Davis JI, Simmons MP, Stevenson DW, Wendel JF. 1998. Data decisiveness, data quality, and incongruence in phylogenetic analysis: an example from the monocotyledons using mitochondrial atpA sequences. Systematic Biology 47: 282-310.
24. de Quieroz K, Gauthier J. 1990. Phylogeny as a central principle in taxonomy: phylogenetic definitions of taxon names. Systematic Zoology 39: 307-322.
25. Eriksson T. 1998. AutoDecay ver. 4.0 (program distributed by the author). Department of Botany, Stockholm University, Stockholm.
26. Farris JS. 1969. A successive approximations approach to character weighting. Systematic Zoology 18: 374-385.
27. Farris JS. 1989. The retention index and the rescaled consistency index. Cladistics 5: 417-419.
28. Farris JS, Källersjö M, Kluge AG, Bult C. 1994. Testing significance in incongruence. Cladistics 10: 315-319.
29. Farris JS, Källersjö M, Kluge AG, Bult C. 1995. Constructing a significance test for incongruence. Systematic Biology 44: 570-572.
30. Felsenstein J. 1973. Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Systematic Zoology 22: 240-249.
31. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
32. Fields WG. 1965. The structure, development, food relations, reproduction, and life history of the squid Loligo opalescens Berry. California Fish and Game Bulletin 131: 1-108.
33. Gauthier J, Kluge AG, Rowe T. 1988. Amniote phylogeny and the importance of fossils. Cladistics 4: 105-209.
34. Goloboff P. 1991. Homoplasy and the choice among cladograms. Cladistics 7: 215-232.
35. Goloboff P. 1993. Estimating character weights during tree search. Cladistics 9: 83-91.
36. Gutell RR, Gray MW, Schnare MN. 1993. Compilation of large subunit (23S-& 23S-like) ribosomal RNA structures. Nucleic Acids Research 21: 3055-3074.
37. Hess SC. 1987. Comparative morphology, variability, and systematic applications of cephalopod spermatophores (Teuthoidea and Vampyromorpha). Unpublished D. Phil. Thesis, The University of Miami, Coral Gables, Florida.
38. Hillis DM, Huelsenbeck JP. 1992. Signal, noise and reliability in molecular phylogenetic analyses. Journal of Heredity 83: 189-195.
39. Holm S. 1979. A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 6: 65-70.
40. Lu CC, Roper CFE, Tait RW. 1985. A revision of Loliolus (Cephalopoda: Loliginidae), including L. noctiluca, a new species of squid from Australian waters. Proceedings of the Royal Society of Victoria 97: 59-85.
41. Lu CC, Tait RW. 1983. Taxonomic studies on Sepioteuthis Blainville (Cephalopoda: Loliginidae) from the Australian region. Proceedings of the Royal Society of Victoria 95: 181-204.
42. Maley LE, Marshall CR. 1998. Evolution - the coming of age of molecular systematics. Science 279: 505-506.
43. Nateewathana A. 1992. Taxonomic studies on loliginid squids (Cephalopoda: Loliginidae) from the Andaman Sea coast of Thailand. Phuket Marine Biological Center Research Bulletin 57: 1-40.
44. Natsukari Y. 1983. Taxonomic and morphological studies on the loliginid squids - III. Nipponololigo, a new subgcnus of the genus Loligo. Venus 42: 313-318.
45. Natsukari Y. 1984. Taxonomical and morphological studies on the loliginid squids - IV. Two new genera of the family Loliginidae. Venus 43: 229-239.
46. Natsukari Y, Okutani T. 1975. Taxonomical and morphological studies on the loliginid squids -I. Identity of Loligo chinensis Gray, 1849, redescription of the type specimen and taxonomic review (Cephalopoda: Loliginidae). Venus 34: 85-91.
47. Nesis KN. 1987. Cephalopods of the world. Neptune City, New Jersey: T. F. H. Publications.
48. Recksiek CW, Frey HW (eds). 1978. Biological, oceanographic and acoustic aspects of the market squid Loligo opalescens Berry. California Department of Fish and Game Fish Bulletin 169.
49. Rehder HA. 1945. A new genus and species of squid from the Philippines. Proceedings of the Biological Society of Washington 58: 21-26.
50. Rice WR. 1989. Analyzing tables of statistical tests. Evolution 43: 223-225.
51. Roper CFE. 1983. An overview of cephalopod systematics: status, problems and recommendations. Memoirs of the National Museum of Victoria 44: 13-27.
52. Roper CFE. 1985. Is there a squid in your future: perspectives for new research. American Malacological Bulletin Special Edition No. 1: 93-100.
53. Roper CFE, Young RE. 1967. A review of the Valbyteuthidae and an evaluation of its relationship with the Chiroteuthidae (Cephalopoda: Oegopsida). Proceedings of the United States National Museum 123: 1-9.
54. Stewart-Oaten A. 1995. Rules and judgements in statistics: three examples. Ecology 76: 2001-2009.
55. Swofford DL, Berlocher SH. 1987. Inferring evolutionary trees from gene frequency data under the principle of maximum parsimony. Systematic Zoology 36: 293-325.
56. Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. 1996. Phylogenetic inference. In: Hillis DM, Moritz C, Mable BK, eds. Molecular Systematics, Second edition. Sunderland, Massachusetts: Sinauer Associates, 407-514.
57. Vecchione M, Brakoniecki TF, Natsukari Y, Hanlon RT. 1998. A provisional generic classification of the family Loliginidae. In: Voss NA, Vecchione M, Toll RB, Sweeney MJ, eds. Systematics and biogeography of cephalopods, Volume I. Smithsonian Contributions to Zoology 586, Washington, D.C.: Smithsonian Institution Press, 215-222.
58. Voss GL. 1953. A new family, genus and species of myopsid squid from the Florida Keys. Bulletin of Marine Science of the Gulf and Caribbean 2: 602-609.
59. Voss GL. 1963. Cephalopods of the Philippine Islands. United States National Museum Bulletin 234, 180 pp.
60. Voss GL. 1974. Loligo surinamensis, a new species of loliginid squid (Cephalopoda, Myopsida) from northeastern South America. Zoologische Mededelingen 48: 43-53.
61. Voss GL. 1977. Present status and new trends in cephalopod systematics. In: Nixon M. Messenger JB, eds. The biology of cephalopods. New York: Academic Press, 49-60.
62. Voss NA. 1980. A generic revision of the family Cranchiidae. Bulletin of Marine Science 30: 365-412.
63. Wiens JJ. 1995. Polymorphic characters in phylogenetic systematics. Systematic Biology 44: 482-500.
64. Wiens JJ, Reeder T. 1995. Combining data sets with different numbers of taxa for phylogenetic analysis. Systematic Biology 44: 548-558.
65. Wilkinson M. 1995. Coping with abundant missing entries in phylogenetic inference using parsimony. Systematic Biology 44: 501-514.
66. Yeatman J, Benzie JAH. 1994. Genetic structure and distribution of Photololigo spp. in Australia. Marine Biology 118: 79-87.
67. Young JZ. 1938. The functioning of the giant nerve fibres of the squid. Journal of Experimental Biology 15: 170-185.
68. Young JZ. 1991. Ctenopteryx the comb-fin squid is related to Liligo. Bulletin of Marine Science 49: 148-161.
69. Young RE. 1972. The systematics and areal distribution of pelagic cephalopods from the seas off southern California. Smithsonian Contributions to Zoology 97.
70. Young RE. 1991. Chiroteuthid and related paralarvae from Hawaiian waters. Bulletin of Marine Science 49: 162-183.
71. Young RE, Roper CFE. 1969. A monograph of the Cephalopoda of the North Atlantic. The family Joubiniteuthidae. Smithsonian Contributions to Zoology 15: 1-10.