Human physiome as an information environment

Annals of Biomedical Engineering

Volumn 28, Issue 8, 2000, Pages 1032-1042

  Dao, Ngon ^a   McCormick, Patrick J ^a,c   Dewey Jr , C Forbes ^a,b  

^a Massachusetts Institute of Technology Cambridge   (United States)

^b MASSACHUSETTS INSTITUTE OF TECHNOLOGY   (United States)

^c MICROSOFT   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; BIOLOGICAL MATERIALS; BIOLOGICAL ORGANS; INFORMATION TECHNOLOGY; PHYSIOLOGY;

BIOLOGICAL INFORMATICS; PHYSIOME; SOFTWARE COMPONENT;

BIOMEDICAL ENGINEERING;

BIOLOGICAL MODEL; BIOLOGICAL PHENOMENA AND FUNCTIONS CONCERNING THE ENTIRE ORGANISM; COMPUTER SIMULATION; FACTUAL DATABASE; HUMAN; METHODOLOGY; PHYSIOLOGY; REVIEW; STANDARD;

COMPUTER SIMULATION; DATABASES, FACTUAL; HUMANS; MODELS, BIOLOGICAL; PHYSIOLOGICAL PROCESSES; RESEARCH DESIGN;

EID: 0034352176     PISSN: 00906964     EISSN: None     Source Type: Journal    
DOI: 10.1114/1.1315650     Document Type: Article

References (31)

1. Bassingthwaighte, J. B. Toward modeling the human physionome. In: Molecular and Subcellular Cardiology, edited by S. Sideman and R. Beyar. New York: Plenum, 1995, pp. 331-339.
2. Bassingthwaighte, J. B. Design and strategy for the cardionome project. In: Analytical and Quantitative Cardiology, edited by S. Sideman and R. Beyar. New York: Plenum, 1997, pp. 325-339.
3. Bassingthwaighte, J. B. On designing the physiome project: Outcomes from the conference. Available HTTP: http://nsr.bioeng.washington.edu:80/NSR/physiome/files/ Petrodvoret.1997/outcomes.html [Online document], 1998, (cited 1998 Aug 19).
4. Bassingthwaighte, J. B., Z. Li, and H. Qian. Blood flows and metabolic components of the cardiome. Available HTTP: http://nsr.bioeng.washington.edu:80/NSR/physiome/files/ cardiome653/653.title.fm.html Online document, 1998 [cited 1998 Aug 19].
5. Cattell, R. G. G., Ed. The Object Database Standard: ODMG-93 Release 1.2. San Francisco: Morgan Kaufmann, 1996.
6. Codd, E. F. A relational model of data for large shared data banks. Commun. ACM 13(6):377-387, 1970.
7. Collin, J. C. Strategies for implementing the physisome project. Presented at On Designing the Physiome Project, Petrodvoret, St. Petersburg, Russia, July 5-7, 1997.
8. DB2 Universal Database: Everything your database has been missing. IBM Corporation, San Jose, CA, 1997.
9. Gala, S, and W. Kim. Database design methodology: Converting a relational schema into an object-relational schema. Presented at ACM Symposium on Advanced Database Systems and Their Integration, Japan, October 1994.
10. Hawryszkiewycz, I. T. Database Analysis and Design. Chicago, IL: Science Research Associates, 1984.
11. Hawryszkiewycz, I. T. Relational Database Design: An Introduction. New York: Prentice Hall, 1990.
12. Informix Software, Inc. Informix Guide to SQL: Tutorial, Version 9.1. Menlo Park: Informix Press, 1997.
13. Keller, A. M. Updating relational databases through views. Ph.D. dissertation, Stanford University, 1985.
14. Keller, A. M. and C. Hamon. A C++ Binding for Penguin: a System for Data Sharing among Heterogeneous Object Models. Foundations on Data Organization (FODO), Chicago, October 1993.
15. Keller, A. M., R. Jensen, and S. Agarwal. Persistence software: Bridging Object-Oriented Programming and Relational Databases. SIGMOD: 523-529, 1993.
16. Kim, W. Completeness criteria for object-relational database systems. UniSQL Inc., Austin, TX, 1996.
17. Kim, W. Object-relational database technology: a UniSQL whitepaper, UniSQL Inc., Austin, TX, 1996.
18. Lee, J., and D. Forslund. Coexistence of relational and objects in distributed object computing. Available HTTP: http:// www.acl.lanl.gov/sunrise/dbms/index.html. Online document, June 1995 [cited Oct 15, 1996].
19. McCormick, P. J. Designing Object-Oriented Interfaces for Medical Data Repositories. Electrical Engineering and Computer Science. Cambridge, MA: Massachusetts Institute of Technology Press, 1999.
20. Oracle Corporation. Leveraging digital image assets using the Oracle8 Image Cartridge and the Oracle8 Visual Information Retrieval Cartridge: an Oracle business white paper. Oracle Corporation, Redwood Shores, CA., June 1997.
21. Oracle Corporation. Oracle8 Data Cartridge development: an Oracle technical white paper. Oracle Corporation, Redwood Shores, CA, June 1997.
22. Oracle Corporation. Oracle8 Image Data Cartridges: an Oracle technical white paper. Oracle Corporation, Redwood Shores, CA, June 1997.
23. Popel, A. S. From cell to organ: oxygen transport paradigm. Presented at On Designing the Physiome Project, Petrodvoret, St. Petersburg, Russia, July 5-7, 1997.
24. Popel, A. S., A. S. Greene, C. G. Ellis, K. F. Ley, T. C. Skalak, and P. J. Tonellato. The microcirculation physiome project. Ann. Biomed. Eng. 26(6):911-913, 1998
25. Raub, W. F. Enhancing physiological modeling: a research agenda toward new and better methods. Presented at On Designing the Physiome Project, Petrodvoret, St. Petersburg, Russia, July 5-7, 1997.
26. Sideman, S., and R. Beyar. Integrative and interactive studies of the cardiac system: Deciphering the cardionome. In Analytical and Quantitative Cardiology, edited by S. Sideman and R. Beyar. New York: Plenum, 1997, pp. 341-352.
27. Selkov, E. et al. Metabolic bioinformatics, metabolic reconstruction and mathematical simulation of the cellular metabolism. Presented at On Designing the Physiome Project, Petrodvoret, St. Petersburg, Russia, July 5-7, 1997.
28. Spaan, J. A. E. Bioengineering and integrative physiology of the cardiovascular system. Presented at On Designing the Physiome Project, Petrodvoret, St. Petersburg, Russia, July 5-7, 1997.
29. Stonebraker M., and D. Moore. Object-Relational DBMS: The Next Great Wave. San Francisco, CA: Morgan Kaufman, 1996.
30. Stonebraker, M., and G. Kemnitz. The Postgres next-generation database-management system. Commun. ACM 34:78-92, 1991.
31. Turner, P., and A. M. Keller. Reflections on object-relational applications. OOPSLA Workshop on Object and Relational Databases, Austin, TX, October 1995.