Role of the 3′ tRNA-like structure in tobacco mosaic virus minus-strand RNA synthesis by the viral RNA-dependent RNA polymerase in vitro

Journal of Virology

Volumn 74, Issue 24, 2000, Pages 11671-11680

  Osman, T A M ^a   Hemenway, C L ^a   Buck, K W ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED RNA POLYMERASE; TRANSFER RNA; VIRUS RNA; DNA DIRECTED RNA POLYMERASE;

ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; GENE MUTATION; IN VITRO STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; RNA BINDING; RNA SYNTHESIS; SEQUENCE ANALYSIS; TOBACCO MOSAIC VIRUS; TRANSCRIPTION REGULATION; VIRUS MORPHOLOGY; 3' UNTRANSLATED REGION; DNA TEMPLATE; GENETICS; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT; TOBACCO; VIROLOGY; VIRUS REPLICATION;

3' UNTRANSLATED REGIONS; BASE SEQUENCE; DNA-DIRECTED RNA POLYMERASES; MOLECULAR SEQUENCE DATA; MUTATION; PLANTS, TOXIC; RNA, TRANSFER; RNA, VIRAL; TEMPLATES, GENETIC; TOBACCO; TOBACCO MOSAIC VIRUS; VIRUS REPLICATION;

EID: 0034351547     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.74.24.11671-11680.2000     Document Type: Article

References (49)

1. Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase
2. Infectious transcripts and cDNA clones of RNA viruses
3. Comparison of the replication of positive-stranded RNA viruses of plants and animals
4. Replication of tobacco mosaic virus RNA
5. Full-length tobacco mosaic virus RNAs and defective RNAs have different 3′ replication signals
6. A minimal promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex
7. Sequences 5′ of the conserved tRNA-like promoter modulate the initiation of minus-strand synthesis by the brome mosaic virus RNA-dependent RNA polymerase
8. Regulation of tobamovirus gene expression
9. cDNA cloning of the complete genome of tobacco mosaic virus and production of infectious transcripts
10. The role of the pseudoknot at the 3′ end of turnip yellow mosaic virus RNA in minus-strand synthesis by the viral RNA-dependent RNA polymerase
11. Minimal template requirements for initiation of minus-strand synthesis in vitro by the RNA-dependent RNA polymerase of turnip yellow mosaic virus
12. In vitro transcription by the turnip yellow mosaic virus RNA polymerase: A comparison with the alfalfa mosaic virus and brome mosaic virus replicases
13. Functions of the 3′-untranslated regions of positive strand RNA viral genomes
14. Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus strand promoter activity
15. Mutant viral RNAs synthesized in vitro show altered aminoacylation and replicase activities
16. Replication in vivo of mutant brome mosaic virus RNAs defective in aminoacylation
17. Cis-acting sequences in the replication of plant viruses with plus-sense genomes
18. Solution structure of the 3′-end of brome mosaic virus genomic RNAs: Conformational mimicry with canonical tRNAs
19. A central pseudo-knotted three-way junction imposes tRNA-like mimicry and the orientation of three 5′ upstream pseudoknots in the 3′ terminus of tobacco mosaic virus RNA
20. tRNA-like structures in plant viral RNAs
21. Characterization of chimeric turnip yellow mosaic virus genomes that are infectious in the absence of aminoacylation
22. Similarities between the secondary structure of satellite tobacco mosaic virus and tobamovirus RNAs
23. Analysis of replication complexes of positive strand RNA plant viruses
24. Biological activities of hybrid RNAs generated by the 3′-end exchanges between tobacco mosaic and brome mosaic viruses
25. Eukaryotic transcriptional control
26. Rapid and efficient site-specific mutagenesis without phenotypic selection
27. Cellular factors in the transcription and replication of viral genomes: A parallel to DNA-dependent RNA transcription
28. A phylogenetically conserved sequence within viral 3′ untranslated RNA pseudoknots regulates translation
29. Deletion of internal sequences results in tobacco mosaic virus defective RNAs that accumulate to high levels without interfering with replication of the helper virus
30. Functions of the 126- and 183-kDa proteins of tobacco mosaic virus
31. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
32. RNA polymerase II holoenzymes and subcomplexes
33. Complete replication in vitro of tobacco mosaic virus RNA by a template-dependent, membrane-bound RNA polymerase
34. The tobacco mosaic virus RNA polymerase complex contains a plant protein related to the RNA-binding subunit of yeast eIF-3
35. Soluble, template-dependent extracts from Nicotiana benthamiana plants infected with potato virus X transcribe both plus- and minus-strand RNA templates
36. Interference in trans with brome mosaic virus replication by RNA-2 bearing aminoacylation-deficient mutants
37. Sequence-specific recognition of a subgenomic promoter by a viral RNA polymerase
38. Moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase
39. Turnip yellow mosaic virus RNA-dependent RNA polymerase: Initiation of minus strand synthesis in vitro
40. Specific site selection in RNA resulting from a combination of nonspecific secondary structure and -CCRRR- boxes: Initiation of minus strand synthesis by turnip yellow mosaic virus RNA-dependent RNA polymerase
41. The turnip yellow mosaic virus tRNA-like structure cannot be replaced by generic tRNA-like elements or by heterologous 3′ untranslated regions known to enhance mRNA expression and stability
42. Initiation of (-)strand synthesis catalyzed by the BMV RNA-dependent RNA polymerase: Synthesis of oligonucleotides
43. Mutational analysis of the pseudoknot region in the 3′ noncoding region of tobacco mosaic virus RNA
44. Deletion analysis of the 5′ untranslated leader sequence of tobacco mosaic virus RNA
45. Isolation and characterization of the 102-kilodalton RNA-binding protein that binds to the 5′ and 3′ translational enhancers of tobacco mosaic virus
46. Turnip yellow mosaic virus RNAs with anticodon loop substitutions that result in decreased valylation fail to replicate efficiently
47. Five pseudoknots at the 204 nucleotides long 3′ noncoding region of tobacco mosaic virus RNA
48. Isolation from tobacco mosaic virus-infected tobacco of a solubilized template-specific RNA-dependent RNA polymerase containing a 126K/183K protein heterodimer
49. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide