RNA editing in plant chloroplasts and mitochondria

Russian Journal of Plant Physiology

Volumn 47, Issue 2, 2000, Pages 274-284

  Odintsova, M S ^a   Yurina, N P ^a  

^a BACH INSTITUTE OF BIOCHEMISTRY   (Russian Federation)

Author keywords

Chloroplasts; Mitochondria; RNA editing

Indexed keywords

EID: 0034340142     PISSN: 10214437     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (57)

1. Pring, D., Brennicke, A., and Schuster, W., RNA Editing Gives a New Meaning to the Genetic Information in Mitochondria and Chloroplasts, Plant Mol. Biol., 1993, vol. 21, pp. 1163-1170.
2. Benne, R., Van den Burg, J., Brakenhoff, J., Sloof, P., Van Boom, J.H., and Tromp, M.C., Major Transcript of the Frameshift cox II from Trypanosome Mitochondria Contains Four Nucleotides that Are Not Encoded in the DNA, Cell, 1986, vol. 46, pp. 819-826.
3. RNA Editing: The Alteration of Protein Coding Sequences of RNA, Benne, R., Ed., Chichester: Ellis Horwood, 1993.
4. Bonnard, G., Gualberto, J.M., Lamattina, L., and Grienenberger, J.M., RNA Editing in Plant Mitochondria, Crit. Rev. Plant Sci., 1992, vol. 10, pp. 503-524.
5. Wissinger, B., Brennicke, A., and Schuster, W., Regenerating Good Sense: RNA Editing and trans-Splicing in Plant Mitochondria, Trends Genet, 1992, vol. 8, pp. 322-328.
6. Kössel, H., Hoch, B., Maier, R.M., Igloi, G.L., Kudla, J., Zeltz, P., Freyer, R., Neckermann, K., and Ruf, S., RNA Editing in Chloroplasts of Higher Plants, Plant Mitochondria, Brennicke, A. and Koock, U., Eds., Weinheim: VCH, 1993, pp. 93-102.
7. Gray, M.W. and Covello, P.S., RNA Editing in Plant Mitochondria and Chloroplasts, FASEB J., 1993, vol. 7, pp. 64-71.
8. Maier, R.M., Zeltz, P., Kössel, H., Bannard, G., Gualberto, J.M., and Grienenberger, J.M., RNA Editing in Plant Mitochondria and Chloroplasts, Plant Mol. Biol., 1996, vol. 32, pp. 343-365.
9. Chaudhuri, S. and Maliga, P., New Insights into Plastid RNA Editing, Trends Plant Sci., 1997, vol. 2, pp. 5-6.
10. Mulligan, R.M. and Maliga, P., RNA Editing in Mitochondria and Plastids, A Look beyond Transcription: Mechanisms Determining mRNA and Translation in Plants, Bailey-Serres, J. and Gallie, D.R., Eds., Baltimore: Am. Soc. Plant Physiol., 1998, pp. 153-161.
11. Yurina, N. and Odintsova, M.S., A Comparison of the Gene Structural Organization in Plant Chloroplasts and Mitochondria, Genetika, 1998, vol. 34, pp. 5-22.
12. Covello, P.S. and Gray, M.W., RNA Editing in Plant Mitochondria, Nature, 1987, vol. 341, pp. 662-666.
13. Gualberto, J.M., Lamattina, L., Bonnard, G., Weil, J.H., and Grienenberger, J.M., RNA Editing in Wheat Mitochondria Results in the Conservation of Protein Sequences, Nature, 1989, vol. 341, pp. 660-662.
14. Hiesel, R., Wissinger, B., Schuster, W., and Brennicke, A., RNA Editing in Plant Mitochondria, Science, 1989, vol. 246, pp. 1632-1634.
15. Chapdelaine, Y. and Bonen, L., The Wheat Mitochondrial Gene for Subunit-I of the NADH Dehydrogenase Complex: A trans-Splicing Model for This Gene-in-Pieces, Cell, 1991, vol. 65, pp. 465-472.
16. Gonzalez, D.H., Bonnard, G., and Grienenberger, J.M., Gene Involved in the Biogenesis of c-Type Cytochromes Is Cotranscribed with a Ribosomal Protein Gene in Wheat Mitochondria, Curr. Genet., 1993, vol. 21, pp. 248-255.
17. Wissinger, B., Schuster, W., and Brennicke, A., TransSplicing in Oenothera Mitochondria: nadl mRNAs Are Edited in Exon and trans-Splicing Group-II Intron Sequences, Cell, 1991, vol. 65, pp. 473-482.
18. Zanlungo, S., Quinones, V., Moenne, A., Holuigue, L., and Jordana, X., Splicing and Editing of rps10 Transcripts in Potato Mitochondria, Curr. Genet., 1995, vol. 27, pp. 565-571.
19. Schuster, W., Wissinger, B., Unseld, M., and Brennicke, A., Transcripts of the NADH-Dehydrogenase Subunit 3 Gene Are Differentially Edited in Oenothera Mitochondria, EMBO J., 1990, vol. 9, pp. 263-269.
20. Sutton, C.A., Conklin, P.L., Pruitt, K.D., and Hanson, M.R., Editing of Pre-mRNA Can Occur before cis-and trans-Splicing in Petunia Mitochondria, Mol. Cell. Biol., 1991, vol. 11, pp. 4274-4277.
21. Yang, A.J. and Mulligan, R.M., RNA Editing Intermediates of cox2 Transcripts in Maize Mitochondria, Mol. Cell. Biol., 1991, vol. 11, pp. 4278-4281.
22. Gualberto, J.M., Bonnard, G., Lamattina, L., and Grienenberger, J.M., Expression of the Wheat Mitochondrial nad3-rps12 Transcription Unit: Correlation between Editing and mRNA Maturation, Plant Cell, 1991, vol. 3, pp. 1109-1120.
23. Lippok, B., Brennicke, A., and Wissinger, B., Differential RNA Editing in Closely Related Introns in Oenothera Mitochondria, Mol. Gen. Genet., 1994, vol. 243, pp. 39-46.
24. Simpson, L. and Shaw, J., RNA Editing and the Mitochondrial Cryptogenes of Kinetoplastid of Protozoa, Cell, 1989, vol. 57, pp. 355-366.
25. Lu, B.W. and Hanson, M.R., A Single Nuclear Gene Specifies the Abundance and Extent of RNA Editing of a Plant Mitochondrial Transcript, Nucleic Acids Res., 1992, vol. 20, pp. 5699-5703.
26. Hernould, M., Mouras, A., Litvak, S., and Araya, A., RNA Editing of the Mitochondrial atp9 Transcript from Tobacco, Nucleic Acids Res., 1992, vol. 20, p. 1809.
27. Lu, B.W. and Hanson, M.R., A Single Homogeneous Form of ATP6 Protein Accumulates in Petunia Mitochondria Despite the Presence of Differentially Edited atp6 Transcripts, Plant Cell, 1994, vol. 6, pp. 1955-1968.
28. Rajasekhar, V.K. and Mulligan, R.M., RNA Editing in Plant Mitochondria: Alpha-Phosphate Is Retained during C-to-U Conversion in mRNAs, Plant Cell, 1993, vol. 5, pp. 1843-1852.
29. Williams, M.A., Kutcher, B.M., and Mulligan, R.M., Editing Site Recognition in Plant Mitochondria: The Importance of 5'-Flanking Sequences, Plant Mol. Biol., 1998, vol. 36, pp. 229-237.
30. Boyen, C., Leblanc, C., Bonnard, G., Grienenberger, J.M., and Kloareg, B., Nucleotide Sequence of the cox3 Gene from Chondrus crispus: Evidence that UGA Encodes Tryptophan and Evolutionary Implications, Nucleic Acids Res., 1994, vol. 22, pp. 1400-1403.
31. Steinhauser, S., Beckert, S., Capesius, I., Malek, O., and Knoop, V., Plant Mitochondrial RNA Editing, J. Mol. Evol., 1999, vol. 48, pp. 303-312.
32. Maréchal-Drouard, L., Ramamonjisoa, D., Cosset, A., Weil, J.H., and Dietrich, A., Editing Corrects Mispairing in the Acceptor Stem of Bean and Potato Mitochondrial Phenylalanine Transfer RNAs, Nucleic Acids Res., 1993, vol. 21, pp. 4909-4914.
33. Binder, S., Marchfelder, A., and Brennicke, A., RNA Editing of tRNA(Phe) and tRNA(Cys) in Mitochondria of Oenothera berteriana Is Initiated in Precursor Molecules, Mol. Gen. Genet., 1994, vol. 244, pp. 67-74.
34. Maier, R.M., Hoch, B., Zeltz, P., and Kössel, H., Internal Editing of the Maize Chloroplast ndhA Transcript Restores Codons for Conserved Amino Acids, Plant Cell, 1992, vol. 4, pp. 609-616.
35. Oda, K., Yamato, K., Ohta, E., et al., Gene Organization Deduced from the Complete Sequence of Liverwort Marchantia polymorpha Mitochondrial DNA: A Primitive Form of Plant Mitochondrial Genome, J. Mol. Biol., 1992, vol. 223, pp. 1-7.
36. Maier, R.M., Neckermann, K., Ogloi, G.L., and Kössel, H., Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing, J. Mol. Biol., 1995, vol. 251, pp. 614-628.
37. Hiratsuka, J., Shimada, H., Whittier, R., et al., The Complete Sequence of the Rice (Oryza sativa) Chloroplast Genome: Intermolecular Recombination between Distinct tRNA Genes Accounts for a Major Plastid DNA Inversion during the Evolution of Cereals, Mol. Gen. Genet., 1989, vol. 217, pp. 185-194.
38. Shinozaki, K., Ohme, M., Tanaka, M., et al., The Complete Nucleotide Sequence of the Tobacco Chloroplast Genome: Its Gene Organization and Expression, EMBO J., 1986, vol. 5, pp. 2043-2049.
39. Wakasugi, T., Tsudzuki, J., Ito, S., Nakashima, K., Tsudzuki, T., and Sugiura, M., Loss of All ndh Genes as Determined by Sequencing the Entire Chloroplast Genome of the Black Pine Pinus thunbergii, Proc. Natl. Acad. Sci. USA, 1994, vol. 91, pp. 9794-9798.
40. Hoch, B., Maier, R.M., Appel, K., Igloi, G.L., and Kössel, H., Editing of a Chloroplast mRNA by Creation of an Initiation Codon, Nature, 1991, vol. 353, pp. 178-180.
41. Kudla, J., Igloi, G., Metzlaff, M., Hagenmann, R., and Kössel, H., RNA Editing in Tobacco Chloroplasts Leads to the Formation of a Translatable psbL Messenger RNA by a C-to-U Substitution within the Initiation Codon, EMBO J., 1992, vol. 11, pp. 1099-1103.
42. Neckermann, K., Zeltz, P., Igloi, G.L., Kössel, H., and Maier, R.M., The Role of RNA Editing in Conservation of Start Codons in Chloroplast Genomes, Gene, 1994, vol. 146, pp. 177-182.
43. Bock, R., Kössel, H., and Maliga, P., Introduction of a Heterologous Editing Site into the Tobacco Plastid Genome: The Lack of RNA Editing Leads to a Mutant Phenotype, EMBO J., 1994, vol. 13, pp. 4623-4628.
44. Freyer, R., Hoch, B., Neckermann, K., Maier, R.M., and Kössel, H., RNA Editing in Maize Chloroplasts Is a Processing Step Independent of Splicing and Cleavage to Monocistronic mRNAs, Plant J., 1993, vol. 4, pp. 621-629.
45. Ruf, S., Zeltz, P., and Kössel, H., Complete RNA Editing of Unspliced and Dicistronic Transcripts of the IntronContaining Reading Frame IRF170 from Maize Chloroplasts, Proc. Natl. Acad. Sci. USA, 1994, vol. 91, pp. 2295-2294.
46. Freyer, R., Kiefer-Meyer, M.C., and Kössel, H., Occurrence of Plastid RNA Editing in All Major Lineages of Land Plants, Proc. Natl. Sci. USA, 1997, vol. 94, pp. 6285-6290.
47. Karpinska, B., Karpinski, S., and Hallgren, J., The chlB Gene Encoding a Subunit of Light-Independent Protochlorophyllide Reductase Is Edited in Chloroplasts of Conifers, Curr. Genet., 1997, vol. 31, pp. 343-347.
48. Hirose, T., Wakasugi, T., Sugiura, M., and Kössel, H., RNA Editing of Tobacco petB mRNA Occurs Both in Chloroplasts and Non-Photosynthetic Proplastids, Plant Mol. Biol., 1994, vol. 26, pp. 509-513.
49. Zeltz, P., Hess, W.R., Neckermann, K., Borner, T., and Kössel, H., Editing of the Chloroplast rpoB Transcript Is Independent of Chloroplast Translation and Shows Different Patterns in Barley and Maize, EMBO J., 1993, vol. 12, pp. 4291-4296.
50. Gualgerto, J.M., Weil, J.H., and Grienenberger, J.M., Editing of the Wheat coxIII Transcript: Evidence for Twelve C-to-U and One U-to-C Conversions and for Sequence Similarities around Editing Sites, Nucleic Acids Res., 1990, vol. 18, pp. 3771-3776.
51. Maier, R.M., Neckermann, K., Hoch, B., Akhmedov, N.B., and Kössel, H., Identification of Editing Positions in the ndhB Transcript from Maize Chloroplasts Reveals Sequence Similarities between Editing Sites of Chloroplasts and Plant Mitochondria, Nucleic Acids Res., 1992, vol. 20, pp. 6189-6194.
52. Creissen, G., Reynolds, H., Xue, Y., and Mullineaux, P., Simultaneous Targeting of Pea Glutathione Reductase and of a Bacterial Fusion Protein to Chloroplasts and Mitochondria in Transgenic Tobacco, Plant J., 1995, vol. 8, pp. 167-175.
53. Sutton, C.A., Zoubenko, O.V., Hanson, M.R., and Maliga, P., A Plant Mitochondrial Sequence Transcribed in Transgenic Tobacco Chloroplast Is Not Edited, Mol. Cell. Biol., 1995, vol. 15, pp. 1377-1381.
54. Zeltz, P., Kadowaki, K., Kubo, N., Maier, R.M., Hirai, A., and Kössel, H., A Promiscuous Chloroplast DNA Fragment Is Transcribed in Plant Mitochondria but the Encoded RNA Is Not Edited, Plant Mol. Biol., 1996, vol. 31, pp. 647-656.
55. Araya, A., Begu, D., and Litvak, S., RNA Editing in Plants, Physiol. Plant, 1994, vol. 91, pp. 543-550.
56. Bock, R., Hermann, M., and Kössel, H., In vivo Dissection of cis-Acting Determinants for Plastid RNA Editing, EMBO J., 1996, vol. 15, pp. 5052-5059.
57. Bock, R. and Koop, H.U., Extraplastidic Site-Specific Factors Mediate RNA Editing in Chloroplasts, EMBO J., 1997, vol. 16, pp. 3282-3288.