A Comprehensive Approach for Accurate Measurement of Proton-Proton Coupling Constants in the Sugar Ring of DNA

Journal of Magnetic Resonance

Volumn 146, Issue 2, 2000, Pages 260-276

  Yang, Jiping ^a,c   McAteer, Kathleen ^a   Silks, Louis A ^b   Wu, Ruilian ^b   Isern, Nancy G ^a   Unkefer, Clifford J ^b   Kennedy, Michael A ^a  

^a PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

^c SANOFI   (France)

Author keywords

Coupling constants; DNA; J doubling; Selective deuteration; Stripe COSY

Indexed keywords

DEUTERIUM; DNA; OLIGONUCLEOTIDE; PROTON; PURINE DERIVATIVE; TETROSE;

ALGORITHM; ARTICLE; CHEMISTRY; CONFORMATION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

ALGORITHMS; DEUTERIUM; DNA; MAGNETIC RESONANCE SPECTROSCOPY; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; PROTONS; PURINES; TETROSES;

EID: 0034293036     PISSN: 10907807     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmre.2000.2154     Document Type: Article

References (18)

1. M. Karplus, Vicinial proton coupling in nuclear magnetic resonance, J. Am. Chem. Soc. 85, 2870 (1963).
2. J. Cavanagh, W. J. Fairbrother, A. G. Palmer III, and N. J. Skelton, "Protein NMR Spectroscopy," Academic Press, San Diego (1995).
3. L. Zhu, B. R. Reid, and G. P. Drobny, Errors in measuring and interpreting values of coupling constants J from PE.COSY experiments, J. Magn. Reson. A 115, 206-212 (1995).
4. T. Norwood, and K. Jones, Relaxation effects and the measurement of scalar coupling constants using the E.COSY experiment, J. Magn. Reson. A 104, 106-110 (1993).
5. T. Norwood, The effects of relaxation on the E.COSY experiment, J. Magn. Reson. A 114, 92-97 (1995).
6. C. Griesinger, O. W. Sørensen, and R. R. Ernst, Two-dimensional correlation of connected NMR transitions, J. Am. Chem. Soc. 107, 6394-6396 (1985).
7. L. Mueller, P.E. COSY, a simple alternative to E.COSY, J. Magn. Reson. 72, 191-196 (1987).
8. 1H coupling constants in DNA via new Stripe-Cosy and Superstripe-Cosy pulse sequences combined with a novel strategy of selective deuteration, J. Magn. Reson. 129, 212-218 (1997).
9. L. Zhu, B. R. Reid, M. A. Kennedy, and G. P. Drobny, Modulation of J couplings by cross relaxation in DNA sugars, J. Magn. Reson. A 111, 195-202 (1994).
10. A. Foldesi, S.-i. Yamakage, T. V. Maltseva, F. P. Nilson, P. Agback, and J. Chattopadhyaya, Partially-deuterated nucleotide residues in large DNA duplex simplify the spectral overlap and provide both the J-coupling and nOe informations by the "NMR-window" approach, Tetrahedron 51, 10,065-10,092 (1995).
11. M. A. Delsuc and G. C. Levy, The application of maximum entropy processing to the deconvolution of coupling patterns in NMR, J. Magn. Reson. 76, 306-315 (1988).
12. J. A. Jones, D. S. Grainger, P. J. Hore, and G. J. Daniell, Analysis of COSY cross peaks by deconvolution of the active splittings, J. Magn. Reson. A 101, 162-169 (1993).
13. A. A. Bothner-By and J. Dadok, Useful manipulations of the free induction decay, J. Magn. Reson. 72, 540-543 (1987).
14. P. Huber and G. Bodenhausen, Simplification of multiplets by deconvolution in one- and two-dimensional NMR spectra, J. Magn. Reson. A 102, 81-89 (1993).
15. L. McIntyre and R. Freeman, Accurate measurement of coupling constants by J doubling, J. Magn. Reson. 96, 425-431 (1992).
16. V. Blechta, F. Del Rio-Portilla, and R. Freeman, Long-range carbon-proton couplings in strychnine, Magn. Reson. Chem. 32, 134-137 (1994).
17. 1H coupling constants in DNA fragments by 2D NMR, J. Magn. Reson. 79, 429-438 (1988).
18. R. K. Harris, "Nuclear Magnetic Resonance Spectroscopy," Longman Scientific Technical, New York (1986).