Effects of three characteristic amino acid residues of pharaonis phoborhodopsin on the absorption maximum

Photochemistry and Photobiology

Volumn 72, Issue 1, 2000, Pages 141-145

  Shimono, Kazumi ^a   Iwamoto, Masayuki ^a   Sumi, Masato ^a   Kamo, Naoki ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BACTERIORHODOPSIN; OPSIN; PHOBORHODOPSIN; RHODOPSIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BACTERIUM; COLOR; LIGHT ABSORPTION; MUTANT; NONHUMAN; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; AMINO ACIDS; ARCHAEAL PROTEINS; BACTERIORHODOPSINS; CAROTENOIDS; HALORHODOPSINS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NATRONOBACTERIUM; PHOTOCHEMISTRY; PROTEIN CONFORMATION; SENSORY RHODOPSINS; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROPHOTOMETRY;

ARCHAEA; BACTERIA (MICROORGANISMS);

EID: 0034237072     PISSN: 00318655     EISSN: None     Source Type: Journal    
DOI: 10.1562/0031-8655(2000)072<0141:EOTCAA>2.0.CO;2     Document Type: Article

References (20)

1. Haupts, U., J. Tittor and D. Oesterhelt (1999) Closing in on bacteriorhodopsin: progress in understanding the molecule. Annu. Rev. Biophys. Biomol. Struct. 28, 367-399.
2. Lanyi, J. K. (1990) Halorhodopsin, a light-driven electrogenic chloride-transport system. Physiol. Rev. 70, 319-330.
3. Hoff, W. D., K. H. Jung and J. L. Spudich (1997) Molecular mechanism of photosignaling by archaeal sensory rhodopsins. Annu. Rev. Biophys. Biomol. Struct. 26, 223-258.
4. Tomioka, H., T. Takahashi, N. Kamo and Y. Kobatake (1986) Flash spectrophotometric identification of a fourth rhodopsin-like pigment in Halobacterium halobium. Biochem. Biophys. Res. Commun. 139, 389-395.
5. Takahashi, T., B. Yan, P. Mazur, F. Derguini, K. Nakanishi and J. L. Spudich (1990) Color regulation in the archaebacterial phototaxis receptor phoborhodopsin (sensory rhodopsin II). Biochemistry 29, 8467-8474.
6. Nakanishi, K., Y. Balogh-Nair, M. Arnaboldi, K. Tsujimoto and B. Honig (1980) An external point-charge model for bacteriorhodopsin to account for its purple color. J. Am. Chem. Soc. 102, 7945-7947.
7. Hu, J., R. G. Griffin and J. Herzfeld (1994) Synergy in the spectral tuning of retinal pigments: complete accounting of the opsin shift in bacteriorhodopsin. Proc. Natl. Acad. Sci. USA 91, 8880-8884.
8. Kakitani, T., Y. Beppu and A. Yamada (1999) Color tuning mechanism of human red and green visual pigments. Photochem. Photobiol. 70, 686-693.
9. Beppu, Y. and T. Kakitani (1994) Theoretical study of color control mechanism in retinal proteins. I. Role of the tryptophan residue, tyrosine residue and water molecule. Photochem. Photobiol. 59, 660-669.
10. Bivin, D. B. and W. Stoeckenius (1986) Photoactive retinal pigments in haloalkaliphilic bacteria. J. Gen. Microbiol. 132, 2167-2177.
11. Hirayama, J., Y. Imamoto, Y. Shichida, N. Kamo, H. Tomioka and T. Yoshizawa (1992) Photocycle of phoborhodopsin from haloalkaliphilic bacterium (Natronobacterium pharaonis) studied by low-temperature spectrophotometry. Biochemistry 31, 2093-2098.
12. Miyazaki, M., J. Hirayama, M. Hayakawa and N. Kamo (1992) Flash photolysis study on pharaonis phoborhodopsin from a haloalkaliphilic bacterium (Natronobacterium pharaonis). Biochim. Biophys. Acta 1140, 22-29.
13. Shimono, K., M. Iwamoto, M. Sumi and N. Kamo (1997) Functional expression of pharaonis phoborhodopsin in Escherichia coli. FEBS Lett. 420, 54-56.
14. Shimono, K., M. Iwamoto, M. Sumi and N. Kamo (1998) V108M mutant of pharaonis phoborhodopsin: substitution caused no absorption change but affected its M-state. J. Biochem. (Tokyo) 124, 404-409.
15. Kunkel, T. A., J. D. Roberts and R. A. Zakour (1987) Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154, 367-382.
16. Chizhov, I., G. Schmies, R. Seidel, J. R. Sydor, B. Luttenberg and M. Engelhard (1998) The photophobic receptor from Natronobacterium pharaonis: temperature and pH dependencies of the photocycle of sensory rhodopsin II. Biophys. J. 75, 999-1009.
17. Zhu, J., E. N. Spudich, M. Alam and J. L. Spudich (1997) Effects of substitutions D73E, D73N, D103N and V106M on signaling and pH titration of sensory rhodopsin II. Photochem. Photobiol. 66, 788-791.
18. Greenhalgh, D. A., D. L. Farrens, S. Subramaniam and H. G. Khorana (1993) Hydrophobic amino acids in the retinal-binding pocket of bacteriorhodopsin. J. Biol. Chem. 268, 20 305-20 311.
19. Marti, T., H. Otto, T. Mogi, S. J. Rosselet, M. P. Heyn and H. G. Khorana (1991) Bacteriorhodopsin mutants containing single substitutions of serine or threonine residues are all active in proton translocation. J. Biol. Chem. 266, 6919-6927.
20. Lin, S. L. and B. Yan (1997) Three-dimensional model of sensory rhodopsin I reveals important restraints between the protein and the chromophore. Protein Eng. 10, 197-206.