Analysis at the genomospecies level of microbial populations changes in activated sludge: The case of Aeromonas

Water Research

Volumn 34, Issue 5, 2000, Pages 1696-1704

  Nsabimana, E ^a   Belan, A ^a   Bohatier, J ^a  

^a UNIVERSITÉ CLERMONT AUVERGNE   (France)

Author keywords

Activated sludge; Aeromonas; DNA hybridization group; Ribotyping

Indexed keywords

AMMONIA; BACTERIA; BIOCHEMICAL OXYGEN DEMAND; BIOCHEMISTRY; CHEMICAL OXYGEN DEMAND; DNA; GLUCOSE; PHOSPHATES; SEWAGE BACTERIOLOGY; SEWAGE TREATMENT PLANTS;

ACTIVATED SLUDGE; AEROMONAS; BIOCHEMICAL TEST; DNA HYBRIDIZATION GROUPS; GENOMOSPECIES; MICROBIAL POPULATIONS; NUMERICAL IDENTIFICATION; RIBOTYPING; STARCH GLUTAMATE AMPICILLIN PENICILLIN;

SEWAGE SLUDGE;

AMMONIA; AMPICILLIN; GLUCOSE; GLUTAMIC ACID; PENICILLIN G; PHOSPHATE; STARCH;

ACTIVATED SLUDGE; BACTERIUM; COMMUNITY COMPOSITION; MICROBIAL COMMUNITY; SPECIES DIVERSITY;

ACTIVATED SLUDGE; AEROMONAS; ARTICLE; BACTERIUM ISOLATION; BIOCHEMICAL OXYGEN DEMAND; CHEMICAL OXYGEN DEMAND; CULTURE MEDIUM; DNA HYBRIDIZATION; GENOME; NONHUMAN; PRIORITY JOURNAL; RIBOTYPING; SPECIES DIFFERENTIATION; WASTE WATER TREATMENT PLANT;

AEROMONAS;

EID: 0034174546     PISSN: 00431354     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0043-1354(99)00298-5     Document Type: Article

References (45)

1. Ali A., Carnahan A.M., Altwegg M., Lüthy-Hottenstein J., Joseph S.W. Aeromonas bestiarum sp. nov. (formerely genomospecies DNA group 2 A. hydrophila). Med. Microbiol. Lett. 5:1996;156-165.
2. Al-Shahwani S.M., Horan N.J. The use of protozoa to indicate changes in the performance of activated sludge plants. Water Res. 25:(6):1991;633-638.
3. Altwegg M., Lüthy-Hottenstein J. Methods for the identification of DNA hybridization groups in the genus Aeromonas. Experientia. 47:1991;403-406.
4. Altwegg M., Steigerwalt A.G., Altwegg-Bissing R., Lüthy-Hottenstein J., Brenner D.J. Biochemical identification of Aeromonas genospecies isolated from humans. J. Clin. Microbiol. 28:(2):1990;258-2645.
5. API 20NE Analytical Profile Index. 4th ed. 1990;Marcy l'Etoile-France. 278 pp.
6. Beaver J.R., Crisman T.L. Analysis of the community structure of planktonic ciliated protozoa relative to trophic state in Florida lake. Hydrobiologia. 174:1989;177-184.
7. Burke V., Robinson J., Gracey M., Peterson D., Partridge K. Isolation of Aeromonas hydrophila from a metropolitan water supply: seasonal correlation with clinical isolates. Appl. Environ. Microbiol. 48:1984;361-366.
8. Carnahan A.M., Joseph S.W. Systematic assessment of geographically and clinically diverse aeromonads. Syst. Appl. Microbiol. 16:1993;72-84.
9. Collin J.F., Block J.C., Imbs M.A., Laban P. Contribution to the study of heterotrophic aerobic bacteria of activated sludge. J. Fr. Hydrol. 10:(1):1979;47-58. [contribution à l'étude des bactéries aérobies hétérotrophes d'une boue activée].
10. Curds C.R., Cockburn A. Protozoa in biological sewage-treatment process - II: protozoa as indicators in activated-sludge process. Water Res. 4:1970;237-249.
11. Dybowski W., Franklin D.A. Conditional probability and the identification of bacteria: a pilot study. J. Gen. Microbiol. 54:1968;215-229.
12. Esteban G., Tellez C., Bautista L.M. Effects of habitat quality on ciliated protozoa communities in sewage treatment plants. Environ. Technol. 12:1990;381-386.
13. Esteve C., Gutierrez M.C., Ventosa A. DNA relatedness among Aeromonas allosaccharophila strains and DNA hybridization groups of the genus Aeromonas. Int. J. Syst. Bacteriol. 45:1995;390-391.
14. Esteve C., Gutierrez M.C., Ventosa A. Aeromonas encheleia sp. nov., isolated from European eels. Int. J. Syst. Bacteriol. 45:1995;462-466.
15. Grimont F., Grimont P.A.D. Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools. Ann. Inst. Pasteur/Microbiol. 137 B:1986;165-175.
16. Grimont F., Grimont P.A.D. DNA fingerprinting. Stackebrandt E., Goodfellow M. Nucleic Acid Techniques in Bacterial Systematics. 1991;249-279 Wiley and Sons.
17. Hanninen M.I., Siitonen A. Distribution of Aeromonas phenospecies and genospecies among strains isolated from waters, foods or from human clinical samples. Epidemiol. Infect. 115:(1):1995;39-50.
18. Hantula J., Kurki A., Vuoriranta P., Bamford H. Rapid classification of bacterial strains by SDS-polyacrylamide gel electrophoresis: population dynamics of the dominant dispersed phase bacteria of activated sludge. Appl. Microbiol. Biotechnol. 34:1991;551-555.
19. Hazen T.C. A model for the density of Aeromonas hydrophila in Albermarle sound, North Carolina. Microb. Ecol. 9:1983;137-153.
20. Huguet J.M., Ribas F. SGAP-10C agar for the isolation and quantification of Aeromonas from water. J. Appl. Bacteriol. 70:1991;81-88.
21. Huys G., Kersters I., Vancanneyt M., Coopman R., Janssen P., Kersters K. Diversity of Aeromonas sp. in flemish drinking water production plants as determined by gas-liquid chromatographic analysis of cellular fatty acid methyl esters (FAMEs). J. Appl. Bacteriol. 78:1995;445-455.
22. Huys G., Vancanneyt M., Coopman R., Janssen P., Falsen E., Altwegg M., Kersters K. Cellular fatty acid composition as a chemotaxonomy marker for the differentiation of phenospecies and hybridization groups in the genus Aeromonas. Int. J. Syst. Bacteriol. 44:(4):1994;651-658.
23. Juretschko S., Timmermann G., Schmid M., Schleifer K-H., Pommerening-Röser A., Koops H-P., Wagner M. Combined molecular and conventional analysis of nitrifying bacterium diversity in activated sludge: Nitrosococcus mobilis and Nitrospira-like bacteria as dominant populations. Appl. Environ. Microbiol. 64:(8):1998;3042-3051.
24. Kämpfer P., Erhart R., Beimfohr C., Böhringer J., Wagner M., Amann R. Characterization of bacterial communities from activated sludge: culture-dependent numerical identification versus in situ identification using group- and genus-specific rRNA-targeted oligonucleotide probes. Microb. Ecol. 32:1996;101-121.
25. Kersters I., Huys G., Van Duffel H., Vancanneyt M., Kersters K., Verstraete W. Survival potential of Aeromonas hydrophila in freshwaters and nutrient-poor waters in comparison with other bacteria. J. Appl. Bacteriol. 80:1996;266-276.
26. Kersters I., Van Vooren L., Huys G., Jansen P., Kersters K., Verstraete W. Influence of temperature and process technology on the occurrence of Aeromonas species and hygienic indicator organisms in drinking water production plants. Microb. Ecol. 30:1995;203-218.
27. Lapage S.P., Bascomb S., Willcox W.R., Curtis M.A. Identification of bacteria by computer: general aspects and perspectives. J. Clin. Microbiol. 77:1973;273-290.
28. Madoni P. A sludge biotic index (SBI) for the evaluation of the biological performance of activated sludge plants based on the microfauna analysis. Water Res. 28:(1):1994;67-75.
29. Manz W., Eisenbrecher M., Neu T.R., Szewzyk U. Abundance and spatial organization of Gram-negative sulfate-reducing bacteria in activated sludge investigated by in situ probing with specific 16 S rRNA targeted oligonucleotides. FEMS Microbiol. Ecol. 25:1998;43-61.
30. Martinetti Lucchini G., Altwegg M. rRNA gene restriction patterns as taxonomic tools for the genus Aeromonas. Int. J. Syst. Bacteriol. 42:(3):1992;384-389.
31. Meugnier H., Fernandez M.P., Bes M., Brun Y., Bornstein N., Freney J., Fleurette J. rRNA gene restriction patterns as an epidemiological marker in nosocomial outbreaks of Staphylococcus aureus infections. Res. Microbiol. 144:1993;25-33.
32. Millership S.E., Want S.V. Characterisation of strains of Aeromonas sp. by phenotype and whole-cell protein fingerprint. J. Med. Microbiol. 39:1993;107-113.
33. Monange F. (1996) Laboratoire de Biologie Comparée des Protistes, 63177 Aubiere Cedex, France.
34. Monfort P., Baleux B. Dynamics of Aeromonas hydrophila, Aeromonas sobria and Aeromonas caviae in a sewage treatment pond. Appl. Environ. Microbiol. 56:(7):1990;1999-2006.
35. Moyer N.P., Martinetti G., Lütty-Hottenstein J., Altwegg M. Value of rRNA gene restriction patterns of Aeromonas sp. for epidemiological investigations. Curr. Microbiol. 24:1992;15-21.
36. Poffe R., Op de Beeck E. Enumeration of Aeromonas hydrophila from domestic wastewater treatment plants and surface waters. J. Appl. Bacteriol. 71:1991;366-370.
37. Rhodes W.M., Kator H. Seasonal occurrence of mesotrophic Aeromonas sp. as a function of biotype and water quality in temperate freshwater lakes. Water Res. 28:(11):1994;2241-2251.
38. Rippey S.R., Cabelli V.J. Occurrence of Aeromonas hydrophila in limnetic environments: relationship of the organism to trophic state. Microb. Ecol. 6:1980;454.
39. Salvado H., Gracia M.P. Response of ciliate populations to changing environmental conditions along a freshwater reservoir. Arch. Hydrobiol. 123:1991;239-255.
40. Salvado H., Gracia M.P. Determination of organic loading rate of activated sludge plants based on protozoan analysis. Water Res. 27:(5):1993;891-895.
41. Shoshana B., Lapage S.P., Curtis M.A., Willcox W.R. Identification of bacteria by computer: identification of reference strains. J. Gen. Microbiol. 77:1973;291-315.
42. Snaidr J., Amann R., Huber I., Ludwig W., Schleifer K-H. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol. 63:(7):1997;2884-2896.
43. Sugita H., Nakamura T., Tanaka K., Deguchi Y. Identification of Aeromonas species isolated from freshwater fish with the microplate hybridization method. Appl. Environ. Microbiol. 60:(8):1994;3036-3038.
44. Wagner M., Amann R., Lemmer H., Schleifer K-H. Probing activated sludge with proteobacteria-specific oligonucleotides: inadequacy of culture-dependent methods for describing microbial community structure. Appl. Environ. Microbiol. 59:1993;1520-1525.
45. Willcox W.R., Lapage S.P., Bascomb S., Curtis M.A. Identification of bacteria by computer: theory and programming. J. Gen. Microbiol. 77:1973;317-330.