Magnetization Transfer via Residual Dipolar Couplings: Application to Proton-Proton Correlations in Partially Aligned Proteins

Journal of Magnetic Resonance

Volumn 143, Issue 2, 2000, Pages 435-439

  Pellecchia, Maurizio ^a,c   Vander Kooi, Craig W ^a   Keliikuli, Kai ^a   Zuiderweg, Erik R P ^a,b  

^a UNIVERSITY OF MICHIGAN   (United States)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^c Triad Therapeutics Inc   (United States)

Author keywords

Homonuclear decoupling; Protein assignment; Protein structure; Residual dipolar coupling

Indexed keywords

AMIDE; HYDROGEN; OUTER MEMBRANE PROTEIN; PROTEIN TYROSINE PHOSPHATASE; PROTON; YOPH PROTEIN, YERSINIA;

ALGORITHM; ARTICLE; CHEMISTRY; ELECTRON SPIN RESONANCE; METHODOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN MOTIF; YERSINIA;

ALGORITHMS; AMIDES; AMINO ACID MOTIFS; BACTERIAL OUTER MEMBRANE PROTEINS; ELECTRON SPIN RESONANCE SPECTROSCOPY; HYDROGEN; MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN-TYROSINE-PHOSPHATASE; PROTONS; YERSINIA;

EID: 0034167529     PISSN: 10907807     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmre.2000.2058     Document Type: Editorial

References (29)

1. N. Tjandra and A. Bax, Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium, Science 278, 1111-1114 (1997).
2. J. R. Tolman, J. M. Glanagan, M. A. Kennedy, and J. H. Prestegard, Nuclear magnetic dipole interactions in field-oriented proteins: Information for structure determination in solution, Proc. Natl. Acad. Sci. USA 92, 9279-9283 (1995).
3. N. Tjandra, S. Grzesiek, and A. Bax, Magnetic field dependence of nitrogen-proton J splittings in N-15-enriched human ubiquitin resulting from relaxation interference and residual dipolar coupling, J. Am. Chem. Soc. 118, 6264-6272 (1996).
4. C. A. Bewley, K. R. Gustafson, M. R. Boyd, D. G. Covell, A. Bax, G. M. Clore, and A. M. Gronenborn, Solution structure of cyanovirin-N, a potent HIV-inactivating protein, Nature Struct. Biol. 5, 571-578 (1998).
5. A. C. Drohat, N. Tjandra, D. M. Baldisseri, and D. J. Weber, The use of dipolar couplings for determining the solution structure of rat apo-S100B (beta beta), Protein Sci. 8, 800-809 (1999).
6. M. R. Hansen, L. Mueller, and A. Pardi, Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions, Nature Struct. Biol. 5, 1065-1074 (1998).
7. 13 C couplings in the structure determination of magnetically oriented macromolecules in solution, Nature Struct. Biol. 4, 732-738 (1997).
8. N. Tjandra, J. Marquardt, and G. M. Clore, Direct Refinement against Proton-Proton Dipolar Couplings in NMR Structure Determination of Macromolecules, J. Magn. Reson. 142, 393-396 (2000).
9. M. R. Hansen, M. Rance, and A. Pardi, Observation of long-range H-1-H-1 distances in solution by dipolar coupling interactions, J. Am. Chem. Soc. 120, 11210-11211 (1998).
10. P. J. Bolon and J. H. Prestegard, COSY cross-peaks from H-1-H-1 dipolar couplings in NMR spectra of field oriented oligosaccharides, J. Am. Chem. Soc. 120, 9306-9307 (1998).
11. F. Tian, P. J. Bolon, and J. H. Prestegard, Intensity-Based Measurement of Homonuclear Residual Dipolar Couplings from CT-COSY, J. Am. Chem. Soc. 121, 7712-7713 (1999).
12. α residual dipolar couplings in proteins, J. Magn. Reson. 139, 451-453 (1999).
13. K. Pervushin, R. Riek, G. Wider, and K. Wüthrich, Attenuated T-2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution, Proc. Natl. Acad. Sci. USA 94, 12366-12371 (1997).
14. M. Czich and R. Boelens, Sensitivity enhancement in the TROSY experiment, J. Magn. Reson. 134, 158-160 (1998).
15. M. Rance, J. P. Loria, and A. G. III Palmer, Sensitivity improvement of transverse relaxation optimized spectroscopy, J. Magn. Reson. 136, 92-101 (1999).
16. HH coupling constants, J. Magn. Reson. 128, 92-97 (1997).
17. K. V. Pervushin, G. Wider, R. Riek, and K. Wüthrich, The 3D NOESY-[H-1,N-15,H-1]-ZQ-TROSY NMR experiment with diagonal peak suppression, Proc. Natl. Acad. Sci. USA 96, 9607-9612 (1999).
18. J. A. Losonczi and J. H. Prestegard, Improved dilute bicelle solutions for high-resolution NMR of biological macromolecules, J. Biomol. NMR 12, 447-451 (1998).
19. G. M. Clore, A. M. Gronenborn, and N. Tjandra, Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude, J. Magn. Reson. 131, 159-162 (1998).
20. G. M. Clore, A. M. Gronenborn, and A. Bax, A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information, J. Magn. Reson. 133, 216-221 (1998).
21. 13 C dipolar couplings in a perdeuterated 30 kDa protein dissolved in a dilute liquid crystalline phase, J. Am. Chem. Soc. 120, 7385-7386 (1998).
22. J. A. Losonczi, M. Andrec, M. W. F. Fischer, and J. H. Prestegard, Order matrix analysis of residual dipolar couplings using singular value decomposition, J. Magn. Reson. 138, 334-342 (1999).
23. H. Wang, A. V. Kurochkin, Y. Pang, W. D. Hu, G. C. Flynn, and E. R. P. Zuiderweg, NMR solution structure of the 21 kDa chaperone protein DnaK substrate binding domain: A preview of chaperone-protein interaction, Biochemistry 37, 7929-7940 (1998).
24. 15 N residual dipolar coupling measurements, J. Biomol. NMR 15, 335-338 (1999).
25. E. Kupce and R. Freeman, Adiabatic pulses for wide-band inversion and broad-band decoupling, J. Magn. Reson. A 115, 273-276 (1995).
26. E. Kupce and G. Wagner, Wideband homonuclear decoupling in protein spectra, J. Magn. Reson. B 109, 329-333 (1995).
27. P. Güntert, V. Dötsch, G. Wider, and K. Wüthrich, Processing of multidimensional NMR data with the new software PROSA, J. Biomol. NMR 2, 619-629 (1992).
28. C. Bartels, T. Xia, M. Billeter, P. Güntert, and K. Wüthrich, The program XEASY for computer-supported NMR spectral-analysis of biological macromolecules, J. Biomol. NMR 6, 1-10 (1995).
29. M. H. Levitt and R. Freeman, Composite pulse decoupling, J. Magn. Reson. 43, 502-507 (1981).