Major protein of resting rhizomes of Calystegia sepium (hedge bindweed) closely resembles plant RNases but has no enzymatic activity

Plant Physiology

Volumn 122, Issue 2, 2000, Pages 433-445

  Van Damme, Els J M ^a   Hao, Qiang ^a   Barre, Annick ^b   Rougé, Pierre ^b   Van Leuven, Fred ^a   Peumans, Willy J ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b INSTITUT DE PHARMACOLOGIE ET DE BIOLOGIE STRUCTURALE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; CARBOXY TERMINAL SEQUENCE; CATALYSIS; COMPLEMENTARY DNA; ENZYME ACTIVITY; GLYCOSYLATION; MOLECULAR EVOLUTION; RHIZOME; RHIZOME PROTEIN; RIBONUCLEASE; SEQUENCE HOMOLOGY; SIGNAL PEPTIDE;

CALYSTEGIA SEPIUM; CONVOLVULUS;

EID: 0034144569     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.122.2.433     Document Type: Article

References (59)

1. Andrews DL, Beames B, Summers MD, Park WD (1988) Characterization of the lipid acyl hydrolase activity of the major potato (Solanum tuberosum) tuber protein, patatin, by cloning and abundant expression in a baculovirus vector. Biochem J 252: 199-206
2. Broothaerts W, Janssens GA, Proost P, Broekaert WF (1995) cDNA cloning and molecular analysis of two self-incompatibility alleles from apple. Plant Mol Biol 27: 499-511
3. Brown PH, Ho T-HD (1986) Barley aleurone layers secrete a nuclease in response to gibberellic acid: purification and partial characterization of the associated ribonuclease, deoxyribonuclease, and 3′ nucleotidase activities. Plant Physiol 82: 8021-8026
4. Coleman GD, Chen TH, Ernst SG, Fuchigami L (1991) Photoperiod control of poplar bark storage protein accumulation. Plant Physiol 96: 686-692
5. De Wald DB, Mason HS, Mullet JH (1992) The soybean vegetative storage proteins VSPα and VSPβ are acid phosphatases active on polyphosphates. J Biol Chem 267: 15958-15964
6. Dubois M, Gilles KA, Hamilton JK, Rebers PA, Smith F (1956) Colorimetric method for determination of sugar and related substances. Anal Chem 28: 350-356
7. Endo Y, Mitsui K, Motizuki M, Tsurugi K (1987) The mechanism of action of ricin and related toxic lectins on eukaryotic ribosomes: the site and the characteristics of the modification in 28S ribosomal RNA caused by the toxins. J Biol Chem 262: 5908-5912
8. Gaboriaud C, Bissery V, Benchetrit T, Mornon JP (1987) Hydrophobic cluster analysis: an efficient new way to compare and analyze amino acid sequences. FEBS Lett 224: 149-155
9. Green PJ (1994) The ribonucleases of higher plants. Annu Rev Plant Physiol Plant Mol Biol 45: 421-445
10. Hankins CN, Kindinger JI, Shannon LM (1988) The lectins of Sophora japonica: II. Purification, properties, and N-terminal amino acid sequences of five lectins from bark. Plant Physiol 86: 67-70
11. Horiuchi H, Yanai K, Takagi M, Yano K, Wakabayashi E, Sansa A, Mines S, Ohgi K, Irie M (1988) Primary structure of a base non-specific ribonuclease from Rhizopus niveus. J Biochem 103: 408-418
12. Ioerger TR, Gohlke JR, Xu B, Kao T-H (1991) Primary structural features of the self-incompatibility protein in Solanaceae. Sex Plant Reprod 4: 81-87
13. Ishimizu T, Endo T, Yamaguchi-Kabata Y, Nakamura KT, Sakiyama F, Norioka S (1998) Identification of regions in which positive selection may operate in S-RNase of Rosaceae: implication for S-allele-specific recognition sites in S-RNase. FEBS Lett 440: 337-342
14. Ishimizu T, Miyagi M, Norioka S, Liu Y-H, Clarke AE, Sakiyama F (1995) Identification of histidine 31 and cysteine 95 in the active site of self-incompatibility associated S6-RNase in Nicotiana alata. J Biochem 118: 1007-1013
15. Ishimizu T, Norioka S, Kanai M, Clarke AE, Sakiyama F (1996) Location of cysteine and cystine residues in S-ribonucleases associated with gametophytic self-incompatibility. Eur J Biochem 242: 627-635
16. Kawata Y, Sakiyama F, Hayashi F, Kyogoku Y (1990) Identification of two essential histidine residues of ribonuclease T2 from Aspergillus oryzae. Eur J Biochem 187: 255-262
17. Kraulis PJ (1991) Molscript: a program to produce both detailed and schematic plots of protein structures. J Appl Cryst 24: 946-950
18. Kurihara H, Nonaka T, Mitsui Y, Ohgi K, Irie M, Nakamura KT (1996) The crystal structure of ribonuclease Rh from Rhizopus niveus at 2.0 Å resolution. J Mol Biol 255: 310-320
19. 4. Nature 227: 680-685
20. Laskowski RA, MacArthur MW, Moss DS, Thornton JN (1993) PROCHECK: a program to check the stereochemistry of protein structures. J Appl Cryst 26: 283-291
21. Lemesle-Varloot L, Henrissat B, Gaboriaud C, Bissery V, Morgat A, Mornon JP (1990) Hydrophobic cluster analysis: procedure to derive structural and functional information from 2-D-representation of protein sequences. Biochimie 72: 555-574
22. Maeshima M, Sasaki T, Asahi Y (1985) Characterization of the major proteins in sweet potato tuber roots. Phytochemistry 24: 1899-1902
23. Maniatis T, Fritsch EF, Sambrook J (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
24. Mas MT, Smith KC, Yarmush DL, Aisaka K, Fine RM (1992) Modeling the anti-CEA antibody combining site by homology and conformational search. Proteins Struct Funct Genet 14: 483-498
25. Matton DP, Mau S-L, Okamoto S, Clarke AE, Newbigin E (1995) The S-locus of Nicotiana data: genomic organization and sequence analysis of two S-RNase alleles. Plant Mol Biol 28: 847-858
26. Mierendorf RC, Pfeffer D (1987) Direct sequencing of denatured plasmid DNA. Methods Enzymol 152: 556-562
27. Mignery GA, Pikaard CS, Hannapel DJ, Park WD (1984) Isolation and sequence analysis of cDNAs for the major potato tuber protein, patatin. Nucleic Acids Res 12: 7987-8000
28. Ohgi K, Horiuchi H, Watanabe H, Iwama M, Takagi M, Irie M (1993) Role of Asp51 and Glu105 in the enzymatic activity of a ribonuclease from Rhizopus. J Biochem 113: 219-224
29. Parry S, Newbigin E, Craik D, Nakamura KT, Bacic A, Oxley D (1998) Structural analysis and molecular model of a self-incompatibility RNase from wild tomato. Plant Physiol 116: 463-469
30. Parry S, Newbigin E, Currie G, Bacic A, Oxley D (1997) Identification of active-site histidine residues of a self-incompatibility ribonuclease from a wild tomato. Plant Physiol 115: 1421-1429
31. Peumans WJ, Nsimba-Lubaki M, Peeters B, Broekaert WF (1985) Isolation and partial characterization of a lectin from Aegopodium podagrarin rhizomes. Planta 164: 75-82
32. Peumans WJ, Van Damme EJM (1995) Lectins as plant defense proteins. Plant Physiol 109: 347-352
33. Peumans WJ, Winter HC, Berner V, Van Leuven F, Goldstein IJ, Truffa-Bachi P, Van Damme EJM (1997) Isolation of a novel plant lectin with an unusual specificity from Calystegia sepium. Glycoconj J 14: 259-265
34. Ponder JW, Richards FM (1987) Tertiary templates for proteins: use of packing criteria in the enumeration of allowed sequences for different structural classes. J Mol Biol 193: 775-791
35. Richman AD, Broothaerts W, Kohn JR (1997) Self-incompatibility RNases from three plant families: homology or convergence? Am J Bot 84: 912-917
36. Royo J, Kunz C, Kowyama Y, Anderson M, Clarke AE, Newbigin E (1994) Loss of a histidine residue at the active site of S-locus ribonuclease is associated with self-incompatibility in Lycopersicon peruvianum. Proc Natl Acad Sci USA 91: 6511-6514
37. Sanda A, Takizawa Y, Irie M (1985a) Carboxymethylation of a ribonuclease from Rhizopus sp. Chem Pharm Bull 33: 4515-4521
38. Sanda A, Takizawa Y, Iwama M, Irie M (1985b) Modification of a ribonuclease from Rhizopus sp. with 1-cyclohexyl-3-(2-morpholinyl-(4)-ethyl) carbodiimide p-toluenesulfonate. J Biochem 98: 125-132
39. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463-5467
40. Smeets K, Van Damme EJM, Verhaert P, Barre A, Rougé P, Van Leuven F, Peumans WJ (1997) Isolation, characterization and molecular cloning of the mannose-binding lectins from leaves and roots of garlic (Allium sativum L). Plant Mol Biol 33: 223-234
41. Staswick PE (1989a) Developmental regulation and the influence of plant sinks on vegetative storage protein gene expression in soybean leaves. Plant Physiol 89: 309-315
42. Staswick PE (1989b) Preferential loss of an abundant storage protein from soybean pods during seed development. Plant Physiol 90: 1252-1255
43. Staswick PE (1994) Storage proteins of vegetative plant tissues. Annu Rev Plant Physiol Mol Biol 45: 303-322
44. Stewart CN, Via LE (1993) A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications. Biotechniques 14: 748-750
45. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
46. Van Damme EJM, Allen AK, Peumans WJ (1988) Related mannose-specific lectins from different species of the family Amaryllidaceae. Physiol Plant 73: 52-57
47. Van Damme EJM, Barre A, Bemer V, Rougé P, Van Leuven F, Peumans WJ (1995a) A lectin and a lectin-related protein are the two most prominent proteins in the bark of yellow wood (Cladrastis lutea). Plant Mol Biol 29: 579-598
48. Van Damme EJM, Barre A, Rougé P, Peumans WJ (1997a) Molecular cloning of the bark and seed lectins from the Japanese pagoda tree (Sophora japonica). Plant Mol Biol 33: 523-536
49. Van Damme EJM, Barre A, Rougé P, Van Leuven F, Peumans WJ (1997b) Isolation and molecular cloning of a novel type 2 ribosome-inactivating protein with an inactive B chain from elderberry (Sambucus nigra) bark. J Biol Chem 272: 8353-8360
50. Van Damme EJM, Barre A, Smeets K, Torrekens S, Van Leuven F, Rougé P, Peumans WJ (1995b) The bark lectin of Robinia pseudoacacia contains a complex mixture of isolectins: characterization of the proteins and the cDNA clones. Plant Physiol 107: 833-843
51. Van Damme EJM, Barre A, Verhaert P, Rougé P, Peumans WJ (1996a) Molecular cloning of the mitogenic mannose/maltose-specific rhizome lectin from Calystegia sepium FEBS Lett 397: 352-356
52. Van Damme EJM, Briké F, Winter HC, Van Leuven F, Goldstein IJ, Peumans WJ (1996b) Molecular cloning of two different mannose-binding lectins from tulip bulbs. Eur J Biochem 236: 419-427
53. Van Damme EJM, Peumans WJ (1993) Cell-free synthesis of lectins. In H-J Gabius, S Gabius, eds, Lectins and Glycobiology. Springer Verlag, Berlin, pp 458-468
54. Van Damme EJM, Peumans WJ, Barre A, Rougé P (1998) Plant lectins: a composite of several distinct families of structurally and evolutionary related proteins with diverse biological roles. Crit Rev Plant Sci 17: 575-692
55. Van Damme EJM, Smeets K, Torrekens S, Van Leuven F, Goldstein IJ, Peumans WJ (1992) The closely related homomeric and heterodimeric mannose-binding lectins from garlic are encoded by one-domain and two-domain lectin genes, respectively. Eur J Biochem 206: 413-420
56. Van Damme EJM, Smeets K, Torrekens S, Van Leuven F, Peumans WJ (1993) The mannose-specific lectins from ramsons (Allium ursinum L.) are encoded by three sets of genes. Eur J Biochem 217: 123-129
57. Van Damme EJM, Van Leuven F, Peumans WJ (1997c) Isolation, characterization and molecular cloning of the bark lectins from Maackia amurensis. Glycoconj J 14: 449-456
58. Von Heijne G (1986) A method for predicting signal cleavage sites. Nucleic Acids Res 11: 4683-4690
59. Yeh KW, Chen JC, Lin MI, Chen YM, Lin CY (1997) Functional activity of sporamin from sweet potato (lpomoea batatas Lam.): a tuber storage protein with trypsin inhibitory activity. Plant Mol Biol 33: 565-570