Development and characterization of expressed sequence tags for the turkey (Meleagris gallopavo) genome and comparative sequence analysis with other birds

Animal Genetics

Volumn 31, Issue 1, 2000, Pages 62-67

  Smith, E ^a   Shi, L ^a   Drummond, P ^a   Rodriguez, L ^a   Hamilton, R ^a   Powell, E ^a   Nahashon, S ^a   Ramlal, S ^a   Smith, G ^a   Foster, J ^a  

^a TUSKEGEE UNIVERSITY   (United States)

Author keywords

Expressed sequence tags; Sequence analysis; Turkey

Indexed keywords

CDNA LIBRARY; CHROMOSOMAL LOCALIZATION; CLONE; COMPLEMENTARY DNA; DNA POLYMORPHISM; EXPRESSED SEQUENCE TAG; GENE SEQUENCING; GENETIC LINKAGE; NUCLEOTIDE SEQUENCE; PRIMER DNA;

ANIMALS; BASE SEQUENCE; CHICKENS; COLUMBIDAE; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; GENOME; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE; POULTRY; QUAIL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TURKEYS;

AVES; COLUMBA; COLUMBA DOMESTICA; COTURNIX JAPONICA; GALLIFORMES; GALLOPAVO; GALLUS GALLUS; JAPONICA; MELEAGRIS GALLOPAVO; NUMIDIA; NUMIDIA MELEAGRIS; PHASIANIDAE;

EID: 0034141398     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2052.2000.00590.x     Document Type: Article

References (26)

1. Adams M.D., Kelley J.M., Gocayne J.D. et al. (1991) Complementary DNA sequencing: expressed sequence tags and Human Genome Project. Science 252, 1651-6.
2. Altschul S.F., Gish W., Miller W., Myers E. & Lipman D.J. (1990) Basic local alignment search tool. Journal of Molecular Biology 215, 403-10.
3. Bartlett J.R., Jones C.P. & Smith E.J. (1996) Linkage analysis among endogenous viral element 1, blue eggshell and pea comb loci in chickens. Journal of Heredity 87, 46-8.
4. Bumstead N., Young R.R., Tregaskes C., Palyga P. & Dunn P.P. (1994) Linkage mapping and partial sequencing of 10 cDNA loci in the chicken. Animal Genetics 25, 337-41.
5. Cheng H.H., Levin I., Vallejo R.L., Khatib H., Dodgson J.B., Crittenden L.B. & Hillel J. (1995) Development of a genetic map of the chicken with markers of high utility. Poultry Science 74, 1855-74.
6. Cooper D.N., Smith B.A., Cooke H.J., Nieman S. & Schmidtke J. (1985) An estimate of unique DNA sequence heterozygosity in the human genome. Human Genetics 60, 201-15.
7. Crittenden L.B., Provencher L., Santangelo L. et al. (1993) Characterization of a red jungle fowl by white leghorn reference population for a molecular mapping of the chicken genome. Poultry Science 72, 334-48.
8. Ewing B., Hillier L., Wendl M.C. & Green P. (1998) Base-calling of automated sequencer traces using Phred. I. Accuracy Assessment. Genome Research 8, 175-85.
9. Gordon D., Abajian C. & Green P. (1998) Consed: a graphical tool for sequence finishing. Genome Research 8, 195-02.
10. Groenen M.A.M., Crooijmans R.P.M.A., Veenendaal A., Cheng H.H., Siwek M. & Van der Poel J.J. (1998) A comprehensive microsatellite linkage map of the chicken genome. Genomics 49, 265-74.
11. Gussow D. & Clackson, T. (1989) Direct clone characterization from plaques and colonies by the polymerase chain reaction. Nucleic Acids Research 17, 4000.
12. Helm-Bychowski H. & Wilson A.C. (1986) Rates of nuclear DNA evolution in pheasant-like birds: Evidence from restriction maps. Proceedings of the National Academy of Sciences USA 83, 688-92.
13. Huang H.B., Song Y.Q., Hsei M. et al. (1999) Development and Characterization of Genetic Mapping Resources for the Turkey, Meleagris gallopavo. Journal of Heredity 90, 240-2.
14. Lai E., Riley J., Purvis I. & Roses A. (1998) A 4-Mb high-density single nucleotide polymorphism-based map around human APOE. Genomics 54, 31-8.
15. Levin I., Cheng H.H., Baxter-Jones C. & Hillel J. (1995) Turkey Microsatellite DNA loci amplified by chicken-specific primers. Animal Genetics 26, 107-10.
16. Li S., Liu N., Zadworny D. & Kuhnlein U. (1998) Genetic variability in white leghorns revealed by chicken liver expressed sequence tags. Poultry Science 77, 134-9.
17. Liu Z., Crooijmans R.P., van der Poel J. & Groenen M. (1996) Use of chicken microsatellite markers in turkey: a pessimistic view. Animal Genetics 27, 191-3.
18. Nickerson D.A., Taylor S.L., Weiss K.M. et al. (1998) DNA Sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene. Nature Genetics 19, 233-40.
19. Rieder M.J., Taylor S.L., Clark A.G. & Nickerson D.A. (1999) Sequence variation in the human angiotensin converting enzyme. Nature Genetics 22, 59-62.
20. Rozen S. & Skaletsky H.J. (1997) Primer3. Code available at http://www-genome.wi.mit.edu/genome_software/other/primer3.html.
21. Ruyter-Spira C.P., Crooijmans R.P., Dijkhof R.J. et al. (1996) Development and mapping of polymorphic microsatellite markers derived from a chicken brain cDNA library. Animal Genetics 27, 229-34.
22. Ruyter-Spira C.P., de Koning D.J., van der Poel J.J., Crooijmans R.P., Dijkhof P.A. & Groenen M.A. (1998) Developing microsatellite Marker from cDNA: a tool for adding expressed sequence tags to the genetic linkage map of the chicken. Animal Genetics 29, 85-90.
23. Sibley C. & Ahlquist J. (1990) Phylogeny and Classification of Birds: a Study in Molecular Evolution. Yale University, New Haven, Connecticut.
24. Smith E. (1998) A Sequence Tagged Site in the Chicken Based on Primers Specific for the mouse transcription factor core-binding factor alpha 1 (CBFA1). Animal Genetics 29, 236-43.
25. Spike C.A., Bumstead N., Crittenden L.B. & Lamont S.J. (1996) RFLP mapping of expressed sequence tags in the chicken. Journal of Heredity 87, 6-9.
26. Wong E.A., Ferrin N.H., Silsby J.L. & el Halawani M.E. (1991) Cloning of a turkey prolactin cDNA: expression of prolactin mRNA throughout the reproductive cycle of the domestic turkey (Meleagris gallopavo). General Comparative Endocrinology 83, 18-26.