Linkage mapping and comparative analysis of bovine expressed sequence tags (ESTs)

Animal Genetics

Volumn 31, Issue 3, 2000, Pages 171-177

  Grosse, W M ^a   Kappes, S M ^b   McGraw, R A ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b U S MEAT ANIMAL RESEARCH CENTER   (United States)

Author keywords

Bovine cDNA library; Comparative mapping; Expressed sequence tags; Linkage mapping; Microsatellite; Polymorphism

Indexed keywords

CATTLE; CDNA LIBRARY; EXPRESSED SEQUENCE TAG; GENETIC LINKAGE; GENETIC MARKER; HUMAN CELL; HUMAN; MAMMAL CELL; MAMMALIAN GENETICS; MICROSATELLITE DNA; SEQUENCE HOMOLOGY; SEQUENCE TAGGED SITE;

ANIMALS; BASE SEQUENCE; CATTLE; CHROMOSOME MAPPING; DINUCLEOTIDE REPEATS; DNA PRIMERS; DNA, COMPLEMENTARY; EXPRESSED SEQUENCE TAGS; HUMANS; LINKAGE (GENETICS); MICROSATELLITE REPEATS; SPECIES SPECIFICITY;

BOS TAURUS; BOVINAE; MAMMALIA;

EID: 0034123642     PISSN: 02689146     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2052.2000.00625.x     Document Type: Article

References (43)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W. & Lipman, D.J. (1990) Basic local alignment search tool. Journal of Molecular Biology 215, 403-10.
2. Barendse, W., Vaiman, D., Kemp, S.J. et al. (1997) A medium-density genetic linkage map of the bovine genome. Mammalian Genome 8, 21-8.
3. Bishop, M.D., Kappes, S.M., Keele, J.W. et al (1994) A genetic linkage map for cattle. Genetics 136, 619-39.
4. Boulay, J.L., Dennefeld, C. & Alberga, A. (1987) The Drosophila developmental gene snail encodes a protein with nucleic acid binding fingers. Nature 330, 395-8.
5. Chen, Z.Y., Hotamisligil, G.S., Huang, J.K. et al. (1991) Structure of the human gene for monoamine oxidase type A. Nucleic Acids Research 19, 4537-41.
6. Chowdhary, B.P., Fronicke, L., Gustavsson, I. & Scherthan, H. (1996) Comparative analysis of the cattle and human genomes: detection of ZOO-FISH and gene mapping-based chromosomal homologies. Mammalian Genome 7, 297-302.
7. Chowdhary, B.P., Raudsepp, T., Fronicke, L. & Scherthan, H. (1998) Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH. Genome Research 8, 577-89.
8. Clark, T.G., Morris, J., Akamatsu, M., McGraw, R. & Ivarie, R. (1990) A bovine homolog to the human myogenic determination factor myf-5: sequence conservation and 3′ processing of transcripts. Nucleic Acids Research 18, 3147-53.
9. Cockett, N.E., Shay, T.L., Beever, J.E. et al. (1999) Localization of the locus causing Spider Lamb Syndrome to the distal end of ovine Chromosome 6. Mammalian Genome 10, 35-8.
10. Deloukas, P., Schuler, G.D., Gyapay, G. et al. (1998) A physical map of 30,000 human genes. Science 282, 744-6.
11. Doenecke, D. & Tonjes, R. (1986) Differential distribution of lysine and arginine residues in the closely related histones H1: and H5:. Analysis of a human H1 gene. Journal of Molecular Biology 187, 461-4.
12. Fridolfsson, A.K., Hori, T., Wintero, A.K. et al. (1997) Expansion of the pig comparative map by expressed sequence tags (EST) mapping. Mammalian Genome 8, 907-12.
13. Funderburgh, J.L., Funderburgh, M.L., Brown, S.J. et al. (1993) Sequence and structural implications of a bovine corneal keratan sulfate proteoglycan core protein. Protein 37B represents bovine lumican and proteins 37A and 25 are unique. Journal of Biological Chemistry 268, 11874-80.
14. Green, P., Falls, K. & Crooks, S. (1990) Documentation for CRI-Map, Version 2.4. Washington University School of Medicine, St. Louis, MO.
15. Grosse, W.M., Finlay, O., Kossarek, L.M., Clark, T.G. & McGraw, R.A. (1995) Five bovine microsatellite markers derived from skeletal muscle cDNA: RME01, RME11, RME23, RME25 and RME33. Animal Genetics 26, 126-7.
16. Hayashi, K. (1999) Recent enhancements in SSCP. Genetic Analysis 14, 193-6.
17. Heaton, M.P., Laegreid, W.W., Beattie, C.W., Smith, T.P.L. & Kappes, S.M. (1999) Identification and genetic mapping of bovine chemokine genes expressed in epithelial cells. Mammalian Genome 10, 128-33.
18. Kappes, S.M., Keele, J.W., Stone, R.T. et al. (1997) A second-generation linkage map of the bovine genome. Genome Research 7, 235-49.
19. Khan, A.S., Wilcox, A.S., Hopkins, J.A. & Sikela, J.M. (1991) Efficient double stranded sequencing of cDNA clones containing long poly (A) tails using anchored poly (dT) primers. Nucleic Acids Research 19, 1715.
20. Lahbib-Mansais, Y., Dalias, G., Milan, D. et al. (1999) A successful strategy for comparative mapping with human ESTs: 65 new regional assignments in the pig. Mammalian Genome 10, 145-53.
21. Liao, K. & Lane, M.D. (1995) Expression of a novel insulin-activated amino acid transporter gene during differentiation of 3T3-L1 preadipocytes into adipocytes. Biochemical and Biophysical Research Communications 208, 1008-15.
22. Lücke, H., Prehn, S., Ashford, A.J., Remus, M., Frank, R. & Dobberstein, B. (1993) Assembly of the 68-and 72-kD proteins of signal recognition particle with 7S RNA. Journal of Cell Biology 121, 977-85.
23. Ma, R.Z., Beever, J.E. et al. (1996) A male linkage map of the cattle (Bos taurus) genome Journal of Heredity 87, 261-71.
24. Matsui, T., Amano, M., Yamamoto, T. et al. (1996) Rho-associated kinase, a novel serine/threonine kinase, as a putative target for the small GTP binding protein Rho. EMBO 15, 2208-16.
25. McGraw, R.A., Grosse, W.M., Kappes, S.M., Beattie, C.W. & Stone, R.T. (1997) Thirty-four bovine microsatellite markers. Animal Genetics 28, 66-8.
26. Morita, T., Sato, T., Nyunoya, H. et al. (1993) Isolation of a cDNA clone encoding DNA-binding protein (TAXREB107) that binds specifically to domain C of the tax-responsive enhancer element in the long terminal repeat of human T-cell leukemia virus type 1. AIDS Research and Human Retroviruses 9, 115-21.
27. Nakagawa, S. & Takeichi, M. (1995) Neural crest cell-cell adhesion controlled by sequential and subpopulation-specific expression of novel cadherins. Development 121, 1321-32.
28. O'Brien, S.J. (1992) Mammalian genome mapping lessons and prospects. Current Opinions in Genetics and Development 1, 105-11.
29. O'Brien, S.J., Menotti-Raymond, M., Murphy, W.J. et al. (1999) The Promise of Comparative Genomics in Mammals. Science 286, 458-81.
30. Ruyter-Spira, C.P., Crooijmans, R.P., Dijkhof, R.J. et al. (1996) Development and mapping of polymorphic microsatellite markers derived from a chicken brain cDNA library. Animal Genetics 27, 229-34.
31. Sambrook, J., Fritsch, E.F. & Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring, Harbor, New York.
32. Sargent, M.G. & Bennett, M.F. (1990) Identification in Xenopus of a structural homologue of the Drosophila gene Snail. Development 109, 967-73.
33. Schuler, G.D., Boguski, M.S., Stewart, E.A. et al. (1996) A gene map of the human genome. Science 274, 540-6.
34. Seelan, R.S. & Grossman, L.I. (1993) Structural organization and evolution of the liver isoform gene for bovine cytochrome c oxidase subunit VIIa. Genomics 18, 527-36.
35. Solinas-Toldo, S., Lengauer, C. & Fries, R. (1995) Comparative genome map of human and cattle. Genomics 27, 489-96.
36. Sonstegard, T.S., Lopez-Corrales, N.L., Kappes, S.M., Beattie, C.W. & Smith, T.P. (1997) Comparative mapping of human chromosome 2 identifies segments of conserved synteny near the bovine mh locus. Mammalian Genome 8, 751-5.
37. Wakefield, M.J. & Graves, J.A.M. (1996) Comparative maps of vertebrates. Mammalian Genome 7, 715-6.
38. Wang, D.G., Fan, J.B., Siao, C.J. et al. (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 15, 1077-82.
39. Weber, J.L. & May, P.E. (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. American Journal of Human Genetics 44, 388-96.
40. Womack, J.E., Johnson, J.S., Owens, E.K., Rexroad, C.E. III, Schlapfer, J. & Yang, Y.P. (1997) A whole-genome radiation hybrid panel for bovine gene mapping. Mammalian Genome 8, 854-6.
41. Womack, J.E. & Kata, S.R. (1995) Bovine genome mapping: evolutionary inference and the power of comparative genomics. Current Opinions in Genetic Development 5, 725-33.
42. Xiang, Y.Y., Tanaka, M., Suzuki, M. et al. (1994) Isolation of complementary DNA encoding K-cadherin, a novel rat cadherin preferentially expressed in fetal kidney and kidney carcinoma. Cancer Research 54, 3034-41.
43. Yang, Y.P., Rexroad, C.E. III, Schlapfer, J. & Womack, J.E. (1998) An integrated radiation hybrid map of bovine chromosome 19 and ordered comparative mapping with human chromosome 17. Genomics 48, 93-9.