-
2
-
-
0031127502
-
Protein hinge bending as seen in molecular dynamics simulations of native and M6I mutant T4 lysozymes
-
Arnold, G. E., and R. L. Ornstein. 1997. Protein hinge bending as seen in molecular dynamics simulations of native and M6I mutant T4 lysozymes. Biopolymers. 41:533-544.
-
(1997)
Biopolymers
, vol.41
, pp. 533-544
-
-
Arnold, G.E.1
Ornstein, R.L.2
-
3
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 1983. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comp. Chem. 4:187-217.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
4
-
-
0032080528
-
Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data
-
de Groot, B. L., S. Hayward, D. M. F. van Aalten, A. Amadei, and H. J. C. Berendsen. 1998. Domain motions in bacteriophage T4 lysozyme: a comparison between molecular dynamics and crystallographic data. Proteins Struct. Funct. Genet. 31:116-127.
-
(1998)
Proteins Struct. Funct. Genet.
, vol.31
, pp. 116-127
-
-
De Groot, B.L.1
Hayward, S.2
Van Aalten, D.M.F.3
Amadei, A.4
Berendsen, H.J.C.5
-
5
-
-
0025370815
-
Dominant forces in protein folding
-
Dill, K. A. 1990. Dominant forces in protein folding. Biochemistry. 29: 7133-7155.
-
(1990)
Biochemistry
, vol.29
, pp. 7133-7155
-
-
Dill, K.A.1
-
6
-
-
0027394606
-
Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4-lysozyme have different structural and thermodynamic consequences
-
Eriksson, A. E., W. A. Baase, and B. W. Matthews. 1993. Similar hydrophobic replacements of Leu99 and Phe153 within the core of T4-lysozyme have different structural and thermodynamic consequences. J. Mol. Biol. 229:747-769.
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 747-769
-
-
Eriksson, A.E.1
Baase, W.A.2
Matthews, B.W.3
-
7
-
-
0026567907
-
Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect
-
Eriksson, A. E., W. A. Baase, X. J. Zhang, D. W. Heinz, M. Blaber, E. P. Baldwin, and B. W. Matthews. 1992. Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect. Science. 255:178-183.
-
(1992)
Science
, vol.255
, pp. 178-183
-
-
Eriksson, A.E.1
Baase, W.A.2
Zhang, X.J.3
Heinz, D.W.4
Blaber, M.5
Baldwin, E.P.6
Matthews, B.W.7
-
8
-
-
0025047629
-
T4 lysozyme displays five different crystal conformations
-
Faber. H. R., and B. W. Matthews. 1990. T4 lysozyme displays five different crystal conformations. Nature. 348:263-266.
-
(1990)
Nature
, vol.348
, pp. 263-266
-
-
Faber, H.R.1
Matthews, B.W.2
-
10
-
-
0024295240
-
Contribution of hydrophobic interactions to protein stability
-
Kellis, J. T., K. Nyberg, D. Sali, and A. R. Fersht. 1988. Contribution of hydrophobic interactions to protein stability. Nature. 333:784-786.
-
(1988)
Nature
, vol.333
, pp. 784-786
-
-
Kellis, J.T.1
Nyberg, K.2
Sali, D.3
Fersht, A.R.4
-
11
-
-
0023741058
-
Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3
-
Matsumura, M., W. J. Becktel, and B. W. Matthews. 1988. Hydrophobic stabilization in T4 lysozyme determined directly by multiple substitutions of Ile 3. Nature. 334:406-410.
-
(1988)
Nature
, vol.334
, pp. 406-410
-
-
Matsumura, M.1
Becktel, W.J.2
Matthews, B.W.3
-
12
-
-
0346436100
-
The three-dimensional structure of the lysozyme from bacteriophage T4
-
Matthews, B. W., and S. J. Remington. 1974. The three-dimensional structure of the lysozyme from bacteriophage T4. Proc. Nat. Acad. Sci. USA. 71:4178-4182.
-
(1974)
Proc. Nat. Acad. Sci. USA
, vol.71
, pp. 4178-4182
-
-
Matthews, B.W.1
Remington, S.J.2
-
13
-
-
0017163950
-
The hinge-bending motion in lysozyme
-
McCammon, J. A., B. Gelin, M. Karplus, and P. G. Wolynes. 1976. The hinge-bending motion in lysozyme. Nature. 262:325-326.
-
(1976)
Nature
, vol.262
, pp. 325-326
-
-
McCammon, J.A.1
Gelin, B.2
Karplus, M.3
Wolynes, P.G.4
-
14
-
-
1842326248
-
Conformation of T4 lysozyme in solution: Hinge-bending motion and the substrate-induced conformational transition studied by site-directed spin labeling
-
McHaourab, H. S., K. J. Oh, C. J. Fang, and W. L. Hubbell. 1997. Conformation of T4 lysozyme in solution: hinge-bending motion and the substrate-induced conformational transition studied by site-directed spin labeling. Biochemistry. 36:307-316.
-
(1997)
Biochemistry
, vol.36
, pp. 307-316
-
-
McHaourab, H.S.1
Oh, K.J.2
Fang, C.J.3
Hubbell, W.L.4
-
15
-
-
0029926518
-
Dynamics of proteins in different solvent systems: Analysis of essential motion in lipases
-
Peters, G. H., S. Toxvaerd, O. H. Olsen, and A. Svendsen. 1996. Dynamics of proteins in different solvent systems: analysis of essential motion in lipases. Biophys. J. 71:2245-2255,.
-
(1996)
Biophys. J.
, vol.71
, pp. 2245-2255
-
-
Peters, G.H.1
Toxvaerd, S.2
Olsen, O.H.3
Svendsen, A.4
-
16
-
-
0031042565
-
Essential dynamics of lipase binding sites: The effect of inhibitors of different chain length
-
Peters, G. H., D. M. F. van Aalten, A. Svendsen, and R. Bywater. 1997. Essential Dynamics of lipase binding sites: the effect of inhibitors of different chain length. Protein Eng. 10:149-158.
-
(1997)
Protein Eng.
, vol.10
, pp. 149-158
-
-
Peters, G.H.1
Van Aalten, D.M.F.2
Svendsen, A.3
Bywater, R.4
-
17
-
-
33646940952
-
Numerical integration of the Cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.-P., G. Ciccotti, and H. J. C. Berendsen. 1977. Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comp. Phys. 23: 327-341.
-
(1977)
J. Comp. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.-P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
19
-
-
0008819754
-
The GROMOS biomolecular simulation program package
-
Scott, W. R. P., P. H. Hunenberger, I. G. Tironi, A. E. Mark, S. R. Billeter, J. Fennen, A. E. Torda, T. Huber, P. Kruger, and W. F. van Gunsteren. 1999. The GROMOS biomolecular simulation program package. J. Phys. Chem. 103:3596-3607.
-
(1999)
J. Phys. Chem.
, vol.103
, pp. 3596-3607
-
-
Scott, W.R.P.1
Hunenberger, P.H.2
Tironi, I.G.3
Mark, A.E.4
Billeter, S.R.5
Fennen, J.6
Torda, A.E.7
Huber, T.8
Kruger, P.9
Van Gunsteren, W.F.10
-
20
-
-
0025005525
-
Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease
-
Shortle, D., W. E. Strites, and A. K. Meeker. 1990. Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease. Biochemistry. 29:8033-8041.
-
(1990)
Biochemistry
, vol.29
, pp. 8033-8041
-
-
Shortle, D.1
Strites, W.E.2
Meeker, A.K.3
-
22
-
-
0029075795
-
The essential dynamics of thermolysin-conformation of the hingebending motion and comparison of simulations in vacuum and water
-
van Aalten, D. M. F., A. Amadei, A. B. M. Linssen, V. G. H. Eijsink, and G. Vriend. 1995. The essential dynamics of thermolysin-conformation of the hingebending motion and comparison of simulations in vacuum and water. Proteins Struct. Funct. Genet. 22:45-54.
-
(1995)
Proteins Struct. Funct. Genet.
, vol.22
, pp. 45-54
-
-
Van Aalten, D.M.F.1
Amadei, A.2
Linssen, A.B.M.3
Eijsink, V.G.H.4
Vriend, G.5
-
23
-
-
0029586726
-
Essential dynamics of the cellular retinol binding protein: Evidence for ligand induced conformational changes
-
van Aalten, D. M. F., J. B. C. Findlay, A. Amadei, and H. J. C. Berendsen. 1996. Essential dynamics of the cellular retinol binding protein: evidence for ligand induced conformational changes. Protein Eng. 8:1129-1135.
-
(1996)
Protein Eng.
, vol.8
, pp. 1129-1135
-
-
Van Aalten, D.M.F.1
Findlay, J.B.C.2
Amadei, A.3
Berendsen, H.J.C.4
-
24
-
-
0025398721
-
WHAT IF: A molecular modeling and drug design program
-
Vriend, G. 1990. WHAT IF: a molecular modeling and drug design program. J. Mol. Graph. 8:52-56.
-
(1990)
J. Mol. Graph.
, vol.8
, pp. 52-56
-
-
Vriend, G.1
-
25
-
-
0031893269
-
The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect
-
Xu, J. A., W. A. Baase, E. Baldwin, and B. W. Matthews. 1998. The response of T4 lysozyme to large-to-small substitutions within the core and its relation to the hydrophobic effect. Protein Sci. 7:158-177.
-
(1998)
Protein Sci.
, vol.7
, pp. 158-177
-
-
Xu, J.A.1
Baase, W.A.2
Baldwin, E.3
Matthews, B.W.4
-
26
-
-
0029150760
-
Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme
-
Zhang, X. J., J. A. Wozniak, and B. W. Matthews. 1995. Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme. J. Mol. Biol. 250:527-552.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 527-552
-
-
Zhang, X.J.1
Wozniak, J.A.2
Matthews, B.W.3
|