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Volumn 163, Issue 2, 2000, Pages 105-129

Synergism analysis of biochemical systems. I. Conceptual framework

Author keywords

Additivity; Antagonism; Mathematical model; Metabolic networks; Power law; Sensitivity analysis

Indexed keywords

ARTICLE; GENE EXPRESSION; INHIBITION KINETICS; KINETICS; MATHEMATICAL ANALYSIS; MATHEMATICAL MODEL; MATHEMATICAL PARAMETERS;

EID: 0034101725     PISSN: 00255564     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0025-5564(99)00056-5     Document Type: Article
Times cited : (25)

References (41)
  • 1
    • 0014004378 scopus 로고
    • Methylene-C14-dioxyphenyl compounds: Metabolism in relation to their synergistic action
    • Casida J.E., Engel J.L., Essac E.G., Kamienski F.X., Kuwatsuka S. Methylene-C14-dioxyphenyl compounds: metabolism in relation to their synergistic action. Science. 153:1966;1130.
    • (1966) Science , vol.153 , pp. 1130
    • Casida, J.E.1    Engel, J.L.2    Essac, E.G.3    Kamienski, F.X.4    Kuwatsuka, S.5
  • 2
    • 0014931567 scopus 로고
    • Synergistic action of sodium and angiotensin on brain mechanisms controlling water and salt balance
    • Andersson B., Westbye O. Synergistic action of sodium and angiotensin on brain mechanisms controlling water and salt balance. Nature. 228:1970;75.
    • (1970) Nature , vol.228 , pp. 75
    • Andersson, B.1    Westbye, O.2
  • 3
    • 0020484780 scopus 로고
    • Substrate synergism and the kinetic mechanism of yeast hexokinase
    • Viola R.E., Raushel F.M., Rendina A.R., Cleland W.W. Substrate synergism and the kinetic mechanism of yeast hexokinase. Biochemistry. 21:1982;1295.
    • (1982) Biochemistry , vol.21 , pp. 1295
    • Viola, R.E.1    Raushel, F.M.2    Rendina, A.R.3    Cleland, W.W.4
  • 4
    • 0024208947 scopus 로고
    • Many transcription factors interact synergistically with steroid receptors
    • Schüle R., Muller M., Kaltschmidt C., Renkawitz R. Many transcription factors interact synergistically with steroid receptors. Science. 242:1988;1418.
    • (1988) Science , vol.242 , pp. 1418
    • Schüle, R.1    Muller, M.2    Kaltschmidt, C.3    Renkawitz, R.4
  • 5
    • 0025349305 scopus 로고
    • A mechanism for synergistic activation of a mammalian gene by GAL4 derivatives
    • Carey M., Lin Y.S., Green M.R., Ptashne M.A. A mechanism for synergistic activation of a mammalian gene by GAL4 derivatives. Nature. 345:1990;361.
    • (1990) Nature , vol.345 , pp. 361
    • Carey, M.1    Lin, Y.S.2    Green, M.R.3    Ptashne, M.A.4
  • 6
    • 0027411327 scopus 로고
    • Synergism in transcriptional activation: A kinetic view
    • Herschlag D., Johnson F.B. Synergism in transcriptional activation: a kinetic view. Genes Development. 7:1993;173.
    • (1993) Genes Development , vol.7 , pp. 173
    • Herschlag, D.1    Johnson, F.B.2
  • 7
    • 0030772416 scopus 로고    scopus 로고
    • Mechanism of the synergistic end-product regulation of Bacillus subtilis glutamine phosphoribosylpyrophosphate amidotransferase by nucleotides
    • Chen S., Tomchick D.R., Wolle D., Hu P., Smith J.L., Switzer R.L., Zalkin H. Mechanism of the synergistic end-product regulation of Bacillus subtilis glutamine phosphoribosylpyrophosphate amidotransferase by nucleotides. Biochemistry. 36:1997;10718.
    • (1997) Biochemistry , vol.36 , pp. 10718
    • Chen, S.1    Tomchick, D.R.2    Wolle, D.3    Hu, P.4    Smith, J.L.5    Switzer, R.L.6    Zalkin, H.7
  • 8
    • 0030996361 scopus 로고    scopus 로고
    • Synergistic activation of transcription by CBP and p53
    • Gu W., Shi X.L., Roeder R.G. Synergistic activation of transcription by CBP and p53. Nature. 387:1997;819.
    • (1997) Nature , vol.387 , pp. 819
    • Gu, W.1    Shi, X.L.2    Roeder, R.G.3
  • 9
    • 0032554621 scopus 로고    scopus 로고
    • Synergistic effects of diacylglycerols and fatty acids on membrane structure and protein kinase C activity
    • Goldberg E.M., Zidovetzki R. Synergistic effects of diacylglycerols and fatty acids on membrane structure and protein kinase C activity. Biochemistry. 37:1998;5623.
    • (1998) Biochemistry , vol.37 , pp. 5623
    • Goldberg, E.M.1    Zidovetzki, R.2
  • 10
    • 0015103748 scopus 로고
    • Concepts relating the behaviour of biochemical systems to their underlying molecular properties
    • Savageau M.A. Concepts relating the behaviour of biochemical systems to their underlying molecular properties. Arch. Biochem. Biophys. 145:1971;612.
    • (1971) Arch. Biochem. Biophys. , vol.145 , pp. 612
    • Savageau, M.A.1
  • 14
  • 16
    • 0342349799 scopus 로고
    • Recasting nonlinear differential equations as S-systems: A canonical nonlinear form
    • Savageau M.A., Voit E.O. Recasting nonlinear differential equations as S-systems: a canonical nonlinear form. Math. Biosci. 87:1987;83.
    • (1987) Math. Biosci. , vol.87 , pp. 83
    • Savageau, M.A.1    Voit, E.O.2
  • 18
    • 0014649230 scopus 로고
    • Biochemical systems analysis: I. Some mathematical properties of the rate law for the component enzymatic reactions
    • Savageau M.A. Biochemical systems analysis: I. Some mathematical properties of the rate law for the component enzymatic reactions. J. Theor. Biol. 25:1969;365.
    • (1969) J. Theor. Biol. , vol.25 , pp. 365
    • Savageau, M.A.1
  • 19
    • 0014658880 scopus 로고
    • Biochemical systems analysis: II. The steady-state solutions for an n-pool system using a power-law approximation
    • Savageau M.A. Biochemical systems analysis: II. The steady-state solutions for an n-pool system using a power-law approximation. J. Theor. Biol. 25:1969;370.
    • (1969) J. Theor. Biol. , vol.25 , pp. 370
    • Savageau, M.A.1
  • 20
    • 0014733809 scopus 로고
    • Biochemical systems analysis: III. Dynamic solutions using the power-law approximation
    • Savageau M.A. Biochemical systems analysis: III. Dynamic solutions using the power-law approximation. J. Theor. Biol. 26:1970;215.
    • (1970) J. Theor. Biol. , vol.26 , pp. 215
    • Savageau, M.A.1
  • 21
    • 0001895885 scopus 로고
    • Rate control of biological processes
    • H. Kacser, J.A. Burns, Rate control of biological processes, Symp. Soc. Exp. Biol. XXVII, 1973, 64.
    • (1973) Symp. Soc. Exp. Biol. , vol.27 , pp. 64
    • Kacser, H.1    Burns, J.A.2
  • 22
    • 0015989446 scopus 로고
    • A linear steady-state treatment of enzymatic chains - General properties, control and effector strength
    • Heinrich R., Rapoport T.A. A linear steady-state treatment of enzymatic chains - General properties, control and effector strength. Eur. J. Biochem. 42:1974;89.
    • (1974) Eur. J. Biochem. , vol.42 , pp. 89
    • Heinrich, R.1    Rapoport, T.A.2
  • 23
    • 0017821331 scopus 로고
    • Sensitivity of a near-equilibrium reaction in a metabolic pathway to changes in substrate concentration
    • Crabtree B., Newsholme E.A. Sensitivity of a near-equilibrium reaction in a metabolic pathway to changes in substrate concentration. Eur. J. Biochem. 89:1978;19.
    • (1978) Eur. J. Biochem. , vol.89 , pp. 19
    • Crabtree, B.1    Newsholme, E.A.2
  • 24
    • 0023661067 scopus 로고
    • Accuracy of alternative representations for integrated biochemical systems
    • Voit E.O., Savageau M.A. Accuracy of alternative representations for integrated biochemical systems. Biochemistry. 26:1987;6869.
    • (1987) Biochemistry , vol.26 , pp. 6869
    • Voit, E.O.1    Savageau, M.A.2
  • 26
    • 0030574071 scopus 로고    scopus 로고
    • Control analysis of unbranched enzymatic chains in states of maximal activity
    • Heinrich R., Klipp E. Control analysis of unbranched enzymatic chains in states of maximal activity. J. Theor. Biol. 182:1996;243.
    • (1996) J. Theor. Biol. , vol.182 , pp. 243
    • Heinrich, R.1    Klipp, E.2
  • 27
    • 0002335520 scopus 로고
    • The relationship between substrates and enzymes of glycolysis in brain
    • Lowry O.H., Passonneau J.V. The relationship between substrates and enzymes of glycolysis in brain. J. Biol. Chem. 239:1964;31.
    • (1964) J. Biol. Chem. , vol.239 , pp. 31
    • Lowry, O.H.1    Passonneau, J.V.2
  • 28
    • 0024673592 scopus 로고
    • Use of implicit methods of general sensitivity theory to develop a systematic approach to metabolic control. I. Unbranched pathways
    • Cascante M., Canela E.I., Franco R. Use of implicit methods of general sensitivity theory to develop a systematic approach to metabolic control. I. Unbranched pathways. Math. Biosci. 94:1989;271.
    • (1989) Math. Biosci. , vol.94 , pp. 271
    • Cascante, M.1    Canela, E.I.2    Franco, R.3
  • 29
    • 0024673575 scopus 로고
    • Use of implicit methods of general sensitivity theory to develop a systematic approach to metabolic control. II. Complex systems
    • Cascante M., Canela E.I., Franco R. Use of implicit methods of general sensitivity theory to develop a systematic approach to metabolic control. II. Complex systems. Math. Biosci. 94:1989;289.
    • (1989) Math. Biosci. , vol.94 , pp. 289
    • Cascante, M.1    Canela, E.I.2    Franco, R.3
  • 30
    • 0034092624 scopus 로고    scopus 로고
    • Synergism analysis of biochemical systems. II. Tensor formulation and treatment of stoichiometric constraints
    • this issue
    • A. Salvador, Synergism analysis of biochemical systems. II. Tensor formulation and treatment of stoichiometric constraints, Math. Biosci., this issue, p. 131.
    • Math. Biosci. , pp. 131
    • Salvador, A.1
  • 31
    • 33846837061 scopus 로고
    • Undamped oscillations derived from the law of mass action
    • Lotka A. Undamped oscillations derived from the law of mass action. J. Am. Chem. Soc. 42:1920;1595.
    • (1920) J. Am. Chem. Soc. , vol.42 , pp. 1595
    • Lotka, A.1
  • 32
    • 24844441872 scopus 로고
    • Chaotic behaviour of simple reaction systems
    • Rössler O.E. Chaotic behaviour of simple reaction systems. Z. Naturfrssch. 31a:1976;259.
    • (1976) Z. Naturfrssch. , vol.31 , pp. 259
    • Rössler, O.E.1
  • 33
    • 0027365278 scopus 로고
    • A second-order approach to Metabolic control analysis
    • Höfer T., Heinrich R. A second-order approach to Metabolic control analysis. J. Theor. Biol. 164:1993;85.
    • (1993) J. Theor. Biol. , vol.164 , pp. 85
    • Höfer, T.1    Heinrich, R.2
  • 34
    • 0025760713 scopus 로고
    • Biochemical Systems Theory: Increasing predictive power by using second-order derivatives measurements
    • Cascante M., Sorribas A., Franco R., Canela E.I. Biochemical Systems Theory: Increasing predictive power by using second-order derivatives measurements. J. Theor. Biol. 149:1991;521.
    • (1991) J. Theor. Biol. , vol.149 , pp. 521
    • Cascante, M.1    Sorribas, A.2    Franco, R.3    Canela, E.I.4
  • 35
    • 0024673591 scopus 로고
    • Strategies for representing metabolic pathways within biochemical systems theory: Reversible pathways
    • Sorribas A., Savageau M.A. Strategies for representing metabolic pathways within biochemical systems theory: reversible pathways. Math. Biosci. 94:1989;239.
    • (1989) Math. Biosci. , vol.94 , pp. 239
    • Sorribas, A.1    Savageau, M.A.2
  • 36
    • 0024673614 scopus 로고
    • A comparison of variant theories of intact biochemical systems. I. Enzyme-enzyme interactions and biochemical systems theory
    • Sorribas A., Savageau M.A. A comparison of variant theories of intact biochemical systems. I. Enzyme-enzyme interactions and biochemical systems theory. Math. Biosci. 94:1989;161.
    • (1989) Math. Biosci. , vol.94 , pp. 161
    • Sorribas, A.1    Savageau, M.A.2
  • 37
    • 0024673624 scopus 로고
    • A comparison of variant theories of intact biochemical systems. II. Flux-oriented and metabolic control theories
    • Sorribas A., Savageau M.A. A comparison of variant theories of intact biochemical systems. II. Flux-oriented and metabolic control theories. Math. Biosci. 94:1989;195.
    • (1989) Math. Biosci. , vol.94 , pp. 195
    • Sorribas, A.1    Savageau, M.A.2
  • 39
    • 0015231849 scopus 로고
    • Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems
    • Savageau M.A. Parameter sensitivity as a criterion for evaluating and comparing the performance of biochemical systems. Nature. 229:1971;542.
    • (1971) Nature , vol.229 , pp. 542
    • Savageau, M.A.1
  • 40
    • 0026470975 scopus 로고
    • The tricarboxylic acid cycle in Dictyostelium discoideum. II. Evaluation of model consistency and robustness
    • Shiraishi F., Savageau M.A. The tricarboxylic acid cycle in Dictyostelium discoideum. II. Evaluation of model consistency and robustness. J. Biol. Chem. 267:1992;22919.
    • (1992) J. Biol. Chem. , vol.267 , pp. 22919
    • Shiraishi, F.1    Savageau, M.A.2
  • 41
    • 0029902666 scopus 로고    scopus 로고
    • Model assessment and refinement using strategies from Biochemical Systems Theory: Application to metabolism in human red blood cells
    • Ni T.-C., Savageau M.A. Model assessment and refinement using strategies from Biochemical Systems Theory: application to metabolism in human red blood cells. J. Theor. Biol. 179:1996;329.
    • (1996) J. Theor. Biol. , vol.179 , pp. 329
    • Ni, T.-C.1    Savageau, M.A.2


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