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Volumn 9, Issue 3, 2000, Pages 505-511

The effect of nucleotide bias upon the composition and prediction of transmembrane helices

Author keywords

Genome; Hydropathy; Membrane protein; Proteome

Indexed keywords

MEMBRANE PROTEIN;

EID: 0034099492     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.9.3.505     Document Type: Article
Times cited : (6)

References (40)
  • 2
    • 0030837927 scopus 로고    scopus 로고
    • Are there dominant membrane protein families with a given number of helices?
    • Arkin IT, Brünger AT, Engelman DM. 1997. Are there dominant membrane protein families with a given number of helices? Proteins Struct Funct Genet 28:465-466.
    • (1997) Proteins Struct Funct Genet , vol.28 , pp. 465-466
    • Arkin, I.T.1    Brünger, A.T.2    Engelman, D.M.3
  • 3
    • 0025796712 scopus 로고
    • The SWISS-PROT protein-sequence data-bank
    • Bairoch A, Boeckmann B. 1991. The SWISS-PROT protein-sequence data-bank. Nucleic Adds Res 19:2247-2248.
    • (1991) Nucleic Adds Res , vol.19 , pp. 2247-2248
    • Bairoch, A.1    Boeckmann, B.2
  • 5
    • 0032931770 scopus 로고    scopus 로고
    • G+C content variation along and among saccharomyces cerevisiae chromosomes
    • Bradnam KR, Seoighe C, Sharp PM, Wolfe KH. 1999. G+C content variation along and among Saccharomyces cerevisiae chromosomes. Mol Biol Evol 16:666-675.
    • (1999) Mol Biol Evol , vol.16 , pp. 666-675
    • Bradnam, K.R.1    Seoighe, C.2    Sharp, P.M.3    Wolfe, K.H.4
  • 7
    • 0032509302 scopus 로고    scopus 로고
    • Genome sequence of the nematode C. elegans: A platform for investigating biology
    • CESC (C. elegans Sequencing Consortium). 1998. Genome sequence of the nematode C. elegans: A platform for investigating biology. Science 229: 2012-2018.
    • (1998) Science , vol.229 , pp. 2012-2018
  • 10
    • 0022995724 scopus 로고
    • Amino acid composition of the membrane and aqueous domains of integral membrane proteins
    • Deber CM, Brandl CJ, Deber RB, Hsu LC, Young XK. 1986. Amino acid composition of the membrane and aqueous domains of integral membrane proteins. Arch Biochem Biophys 251:68-76.
    • (1986) Arch Biochem Biophys , vol.251 , pp. 68-76
    • Deber, C.M.1    Brandl, C.J.2    Deber, R.B.3    Hsu, L.C.4    Young, X.K.5
  • 12
    • 0025371555 scopus 로고
    • A critical evaluation of the hydropathy profile of membrane protein
    • Degli Esposito M, Crimi M, Venturoli G. 1990. A critical evaluation of the hydropathy profile of membrane protein. Eur J Biochem 190:207-219.
    • (1990) Eur J Biochem , vol.190 , pp. 207-219
    • Degli Esposito, M.1    Crimi, M.2    Venturoli, G.3
  • 13
    • 0022510143 scopus 로고
    • Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
    • Engelman DM, Steitz TA, Goldman A. 1986. Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu Rev Biophys Biophys Chem 15:321-353.
    • (1986) Annu Rev Biophys Biophys Chem , vol.15 , pp. 321-353
    • Engelman, D.M.1    Steitz, T.A.2    Goldman, A.3
  • 18
    • 0032870331 scopus 로고    scopus 로고
    • Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis
    • Garcia-Vallve S, Palau J, Romeu A. 1999. Horizontal gene transfer in glycosyl hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis. Mol Biol Evol 16:1125-1134.
    • (1999) Mol Biol Evol , vol.16 , pp. 1125-1134
    • Garcia-Vallve, S.1    Palau, J.2    Romeu, A.3
  • 24
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • Kyte J, Doolittle RF. 1982. A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132.
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 25
    • 0028458257 scopus 로고
    • A measure of helical propensity for amino acids in membrane environments
    • Li SC, Deber CM. 1994a. A measure of helical propensity for amino acids in membrane environments. Nat Struct Biol 1:558.
    • (1994) Nat Struct Biol , vol.1 , pp. 558
    • Li, S.C.1    Deber, C.M.2
  • 26
    • 0028458257 scopus 로고
    • A measure of helical propensity for amino acids in membrane environments
    • Li SC, Deber CM. 1994b. A measure of helical propensity for amino acids in membrane environments. Nat Struct Biol 1:368-373.
    • (1994) Nat Struct Biol , vol.1 , pp. 368-373
    • Li, S.C.1    Deber, C.M.2
  • 27
    • 0031812609 scopus 로고    scopus 로고
    • Cyanobase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. Strain PCC6803
    • Nakamura Y, Kaneko T, Hirosawa M, Miyajima N, Tabata S. 1998. CyanoBase, a www database containing the complete nucleotide sequence of the genome of Synechocystis sp. strain PCC6803. Nucleic Acid Res 26:63-67.
    • (1998) Nucleic Acid Res , vol.26 , pp. 63-67
    • Nakamura, Y.1    Kaneko, T.2    Hirosawa, M.3    Miyajima, N.4    Tabata, S.5
  • 28
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson WR, Lipman DJ. 1988. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 29
    • 0024346677 scopus 로고
    • Hydrophobic organization of membrane proteins
    • Rees DC, DeAntonio L, Eisenberg D. 1989. Hydrophobic organization of membrane proteins. Science 245:510-513.
    • (1989) Science , vol.245 , pp. 510-513
    • Rees, D.C.1    DeAntonio, L.2    Eisenberg, D.3
  • 30
    • 0028902788 scopus 로고
    • Transmembrane helices predicted at 95-percent accuracy
    • Rost B, Casadio R, Fariselli P, Sander C. 1995. Transmembrane helices predicted at 95-percent accuracy. Protein Sci 4:521-533.
    • (1995) Protein Sci , vol.4 , pp. 521-533
    • Rost, B.1    Casadio, R.2    Fariselli, P.3    Sander, C.4
  • 31
    • 0030038634 scopus 로고    scopus 로고
    • Topology prediction for helical transmembrane proteins at 86% accuracy
    • Rost B, Fariselli P, Casadio R. 1996. Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci 5:1704-1718.
    • (1996) Protein Sci , vol.5 , pp. 1704-1718
    • Rost, B.1    Fariselli, P.2    Casadio, R.3
  • 32
    • 0027218266 scopus 로고
    • The isochore patterns of mammalian genomes and their phylogenetic implications
    • Sabeur G, Macaya G, Kadi F, Bernardi G. 1993. The isochore patterns of mammalian genomes and their phylogenetic implications. J Mol Evol 37:93-108.
    • (1993) J Mol Evol , vol.37 , pp. 93-108
    • Sabeur, G.1    Macaya, G.2    Kadi, F.3    Bernardi, G.4
  • 35
    • 0026716643 scopus 로고
    • Membrane protein structure prediction Hydrophobicity analysis and the positive-inside rule
    • von Heijne G. 1992. Membrane protein structure prediction Hydrophobicity analysis and the positive-inside rule. J Mol Biol 225:487-494.
    • (1992) J Mol Biol , vol.225 , pp. 487-494
    • Von Heijne, G.1
  • 36
    • 0029108665 scopus 로고
    • Membrane-protein assembly - Rules of the game
    • von Heijne G. 1995. Membrane-protein assembly - Rules of the game. Bioessays 17:25-30.
    • (1995) Bioessays , vol.17 , pp. 25-30
    • Von Heijne, G.1
  • 38
    • 0032987478 scopus 로고    scopus 로고
    • Membrane protein folding and stability: Physical principles
    • White SH, Wimley WC. 1999. Membrane protein folding and stability: Physical principles. Annu Rev Biophys Biomol Struct 28:319-365.
    • (1999) Annu Rev Biophys Biomol Struct , vol.28 , pp. 319-365
    • White, S.H.1    Wimley, W.C.2
  • 39
    • 0029921620 scopus 로고    scopus 로고
    • A 12-residue-long polyleucine tail is sufficient to anchor synaptobrevin to the endoplasmic reticulum membrane
    • Whitley P, Grahn E, Kutay IT, Rapoport TA, von Heijne G. 1996. A 12-residue-long polyleucine tail is sufficient to anchor synaptobrevin to the endoplasmic reticulum membrane. J Biol Chem 271:7583-7586.
    • (1996) J Biol Chem , vol.271 , pp. 7583-7586
    • Whitley, P.1    Grahn, E.2    Kutay, I.T.3    Rapoport, T.A.4    Von Heijne, G.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.