Parentage analysis with incomplete sampling of candidate parents and offspring

Molecular Ecology

Volumn 9, Issue 5, 2000, Pages 515-528

  Neff, B D ^a   Repka, J ^a   Gross, M R ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

Bluegill; Genetic markers; Maternity; Multiple mating; Parentage; Paternity

Indexed keywords

ALLELE; GENE FREQUENCY; GENE LOCUS; GENETIC MODEL; LEPOMIS MACROCHIRUS; MATING SYSTEM; MULTIPLE MATING; PARENTAGE ANALYSIS; SINGLE SEX MATING; TWO SEX MATING;

ALLELES; ANIMALS; FEMALE; GENETICS, POPULATION; MALE; MATHEMATICS; MICROSATELLITE REPEATS; MODELS, GENETIC; PARENTS; PERCIFORMES; SEXUAL BEHAVIOR, ANIMAL;

AVES; LEPOMIS MACROCHIRUS;

EID: 0034096039     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2000.00889.x     Document Type: Article

References (29)

1. Avise JC (1994) Molecular markers. Natural History and Evolution. Chapman & Hall, New York, NY.
2. Cargnelli L, Gross MR (1996) The temporal dimension in fish recruitment: birth date, body size, and size-dependent survival in a sunfish (bluegill: Lepomis macrochirus). Canadian Journal of Fisheries and Aquatic Sciences, 53, 360-367.
3. Chakraborty R, Meagher TR, Smouse PE (1988) Parentage ana-lysis with genetic markers in natural populations. I. The expected proportion of offspring with unambiguous paternity. Genetics, 118, 527-536.
4. Coltman DW, Bowen WD, Wright JM (1998) Male mating success in an aquatically mating pinniped, the harbour seal (Phoca vitulina), assessed by microsatellite DNA markers. Molecular Ecology, 7, 627-638.
5. Davies NB (1992) Dunnock Behaviour and Social Evolution. Oxford University Press, Oxford, N.Y.
6. Devlin D, Roeder K, Ellstrand NC (1988) Fractional paternity assignment: Theoretical development and comparison to other methods. Theoretical and Applied Genetics, 76, 369-380.
7. Ellstrand NC (1984) Multiple paternity within the fruits of the wild radish, Raphanus sativus. American Naturalist, 123, 819-828.
8. Gross MR (1982) Sneakers, satellites and parentals: polymorphic mating strategies in North American sunfishes. Zeitschrift Fur Tierpsychologie, 60, 1-26.
9. Gross MR (1991) Evolution of alternative reproductive strategies: frequency-dependent sexual selection in male bluegill sunfish. Philosophical Transactions of the Royal Society of London B, 332, 59-66.
10. Gross MR (1996) Alternative reproductive strategies and tactics: diversity within sexes. Trends in Ecology and Evolution, 11, 92-98.
11. Jarne P, Lagoda JL (1996) Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution, 8, 285-288.
12. Keane B, Dittus WPJ, Melnick DJ (1997) Paternity assignment in wild groups of toque macaques Macaca sinica at Polonnaruwa Sri Lanka using molecular markers. Molecular Ecology, 6, 267-282.
13. Lee DS, Gilbert CR, Hocutt CH, Jenkins RE, McAllister DE, Stauffer JR Jr (1980) Atlas of North American Freshwater Fishes. North Carolina State Museum of Natural History, NC, USA.
14. Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7, 639-655.
15. Meagher TR (1986) Analysis of paternity within a natural population of Chamaelirium luteum. I. Identification of most-likely male parents. American Naturalist, 128, 199-215.
16. Meagher TR, Thompson E (1986) The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction. Theoretical Population Biology, 29, 87-106.
17. Meagher TR, Thompson E (1987) Analysis of parentage for naturally established seedlings of Chamaelirium luteum (Liliaceae). Ecology, 68, 803-812.
18. Morin PA, Wallis J, Moore JJ, Woodruff DS (1994) Paternity exclusion in a community of wild chimpanzees using hyper- variable simple sequence repeats. Molecular Ecology, 3, 469-478.
19. Neff BD, Repka J, Gross MR (2000a) Statistical confidence in parentage analysis with incomplete sampling: How many loci and offspring are needed? Molecular Ecology, 9, 529-539.
20. Neff BD, Fu P, Gross MR (2000b) Microsatellite multiplexing in fish. Transactions of the American Fisheries Society, 129, 590-599.
21. Packer C, Gilbert DA, Pusey AE, O'Brien SJ (1991) A molecular genetic analysis of kinship and cooperation in African lions. Nature, 351, 562-565.
22. Petrie M, Kempenaers B (1998) Extra-pair paternity in birds: explaining variation between species and populations. Trends in Ecology and Evolution, 13, 52-58.
23. Philipp DP, Gross MR (1994) Genetic evidence of cuckoldry in bluegill Lepomis macrochirus. Molecular Ecology, 3, 563-569.
24. Prodöhl PA, Loughry WJ, McDonough CM, Nelson WS, Thompson EA, Avise JC (1998) Genetic maternity and paternity in a local population of Armadillos assessed by microsatellite DNA markers and field data. American Naturalist, 151, 7-19.
25. Reynolds JD (1996) Animal breeding systems. Trends in Ecology and Evolution, 11, 68-72.
26. Smouse PE, Meagher TR (1994) Genetic analysis of male reproductive contributions in Chamaelirium luteum (L.) Gray (Liliaceae). Genetics, 136, 313-322.
27. Westneat DF, Frederick PC, Wiley RH (1987) The use of genetic markers to estimate the frequency of successful alternative reproductive tactics. Behavioural Ecology and Sociobiology, 21, 35-45.
28. Wrege PH, Emlen ST (1987) Biochemcial determination of parental uncertainty in white-fronted bee-eaters. Behavioural Ecology and Sociobiology, 20, 153-160.
29. Zar JH (1999) Biostatistical Analysis, 4th edn. Prentice Hall, Inc., Simon & Schuster, Upper Saddle River, NJ.