Mechanism for specificity by HMG-1 in enhanceosome assembly

Molecular and Cellular Biology

Volumn 20, Issue 12, 2000, Pages 4359-4370

  Ellwood, Katharine B ^a   Yen, Yi Meng ^a   Johnson, Reid C ^a   Carey, Michael ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HIGH MOBILITY GROUP PROTEIN; NUCLEOPROTEIN;

ARTICLE; CONTROLLED STUDY; DNA BINDING; DNA CONFORMATION; DNA SEQUENCE; EPSTEIN BARR VIRUS; GENE EXPRESSION REGULATION; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN DNA BINDING; REGULATOR GENE;

ANIMALS; CARRIER PROTEINS; DNA; GENE EXPRESSION REGULATION; HIGH MOBILITY GROUP PROTEINS; HMGB1 PROTEIN; MUTATION; NUCLEIC ACID CONFORMATION; NUCLEOPROTEINS; PROMOTER REGIONS (GENETICS); RECOMBINANT PROTEINS;

HUMAN HERPESVIRUS 4;

EID: 0034081137     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.20.12.4359-4370.2000     Document Type: Article

References (62)

1. Aidinis, V., T. Bonaldi, M. Beltrame, S. Santagata, M. E. Bianchi, and E. Spanopoulou. 1999. The RAG1 homeodomain recruits HMG1 and HMG2 to facilitate recombination signal sequence binding and to enhance the intrinsic DNA-bending activity of RAG1-RAG2. Mol. Cell. Biol. 19:6532-6542.
2. Allain, F. H., Y. M. Yen, J. E. Masse, P. Schultze, T. Dieckmann, R. C. Johnson, and J. Feigon. 1999. Solution structure of the HMG protein NHP6A and its interaction with DNA reveals the structural determinants for non-sequence-specific binding. EMBO J. 18:2563-2579.
3. Boonyaratanakornkit, V., V. Melvin, P. Prendergast, M. Altmann, L. Ronfani, M. E. Bianchi, L. Taraseviciene, S. K. Nordeen, E. A. Allegretto, and D. P. Edwards. 1998. High-mobility group chromatin proteins 1 and 2 functionally interact with steroid hormone receptors to enhance their DNA binding in vitro and transcriptional activity in mammalian cells. Mol. Cell. Biol. 18:4471-4487.
4. Bustin, M. 1999. Regulation of DNA-dependent activities by the functional motifs of the high-mobility-group chromosomal proteins. Mol. Cell. Biol. 19:5237-5246.
5. Bustin, M., and R. Reeves. 1996. High-mobility-group chromosomal proteins: architectural components that facilitate chromatin function. Prog. Nucleic Acid Res. Mol. Biol. 54:35-100.
6. Carey, M. 1998. The enhanceosome and transcriptional synergy. Cell 92:5-8.
7. Chi, T., and M. Carey. 1993. The ZEBRA activation domain: modular organization and mechanism of action. Mol. Cell. Biol. 13:7045-7055.
8. Chi, T., P. Lieberman, K. Ellwood, and M. Carey. 1995. A general mechanism for transcriptional synergy by eukaryotic activators. Nature 377:254-257.
9. Churchill, M. E., D. N. Jones, T. Glaser, H. Hefner, M. A. Searles, and A. A. Travers. 1995. HMG-D is an architecture-specific protein that preferentially binds to DNA containing the dinucleotide TG. EMBO J. 14:1264-1275.
10. Crothers, D. M. 1998. DNA curvature and deformation in protein-DNA complexes: a step in the right direction. Proc. Natl. Acad. Sci. 95:15163-15165.
11. Ellenberger, T. E., C. J. Brandl, K. Struhl, and S. C. Harrison. 1992. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. Cell 71:1223-1237.
12. Ellwood, K., T. Chi, W. Huang, K. Mitsouras, and M. Carey. 1998. Cooperative assembly of RNA polymerase II transcription complexes. Cold Spring Harb. Symp. Quant. Biol. 63:253-261.
13. Ellwood, K., W. Huang, R. Johnson, and M. Carey. 1999. Multiple layers of cooperativity regulate enhanceosome-responsive RNA polymerase II transcription complex assembly. Mol. Cell. Biol. 19:2613-2623.
14. Fixman, E. D., G. S. Hayward, and S. D. Hayward. 1992. trans-acting requirements for replication of Epstein-Barr virus ori-Lyt. J. Virol. 66:5030-5039.
15. Flemington, E., and S. H. Speck. 1990. Autoregulation of Epstein-Barr virus putative lytic switch gene BZLF1. J. Virol. 64:1227-1232.
16. Flemington, E. K., A. E. Goldfeld, and S. H. Speck. 1991. Efficient transcription of the Epstein-Barr virus immediate-early BZLF1 and BRLF1 genes requires protein synthesis. J. Virol. 65:7073-7077.
17. Gartenberg, M. R., and D. M. Crothers. 1988. DNA sequence determinants of CAP-induced bending and protein binding affinity. Nature 333:824-829.
18. Giese, K., C. Kingsley, J. R. Kirshner, and R. Grosschedl. 1995. Assembly and function of a TCR alpha enhancer complex is dependent on LEF-1-induced DNA bending and multiple protein-protein interactions. Genes Dev. 9:995-1008.
19. Glover, J. N., and S. C. Harrison. 1995. Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA. Nature 373:257-261.
20. Golding, A., S. Chandler, E. Ballestar, A. P. Wolffe, and M. S. Schlissel. 1999. Nucleosome structure completely inhibits in vitro cleavage by the V(D)J recombinase. EMBO J. 18:3712-3723.
21. Grasser, K. D., S. H. Teo, K. B. Lee, R. W. Broadhurst, C. Rees, C. H. Hardman, and J. O. Thomas. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253:787-795.
22. Grosschedl, R. 1995. Higher-order nucleoprotein complexes in transcription: analogies with site-specific recombination. Curr. Opin. Cell Biol. 7:362-370.
23. Grosschedl, R., K. Giese, and J. Pagel. 1994. HMG domain proteins: architectural elements in the assembly of nucleoprotein structures. Trends Genet. 10:94-100.
24. Hardman, C. H., R. W. Broadhurst, A. R. Raine, K. D. Grasser, J. O. Thomas, and E. D. Laue. 1995. Structure of the A-domain of HMG1 and its interaction with DNA as studied by heteronuclear three- and four-dimensional NMR spectroscopy. Biochemistry 34:16596-16607.
25. Hardwick, J. M., P. M. Lieberman, and S. D. Hayward. 1988. A new Epstein-Barr virus transactivator, R, induces expression of a cytoplasmic early antigen. J. Virol. 62:2274-2284.
26. Haykinson, M. J., and R. C. Johnson. 1993. DNA looping and the helical repeat in vitro and in vivo: effect of HU protein and enhancer location on Hin invertasome assembly. EMBO J. 12:2503-2512.
27. Hayward, S. D., and J. M. Hardwick. 1991. Herpes virus transcription and its regulation. CRC Press, Boca Raton, Fla.
28. Heumann, P. S. A. H. 1994. DNA-protein interactions principles and protocols, vol. 30. Humana Press, Totowa, N.J.
29. Hindmarsh, P., T. Ridky, R. Reeves, M. Andrake, A. M. Skalka, and J. Leis. 1999. HMG protein family members stimulate human immunodeficiency virus type 1 and avian sarcoma virus concerted DNA integration in vitro. J. Virol. 73:2994-3003.
30. Huang, W., Y. Shostak, P. Tarr, C. Sawyers, and M. Carey. 1999. Cooperative assembly of androgen receptor into a nucleoprotein complex that regulates the prostate-specific antigen enhancer. J. Biol. Chem. 274:25756-25768.
31. Iv, F. V., R. M. Sweet, and M. E. Churchill. 1999. The structure of a chromosomal high mobility group protein-DNA complex reveals sequence-neutral mechanisms important for non-sequence-specific DNA recognition. EMBO J. 18:6610-6618.
32. Jayaraman, L., N. C. Moorthy, K. G. Murthy, J. L. Manley, M. Bustin, and C. Prives. 1998. High mobility group protein-1 (HMG-1) is a unique activator of p53. Genes Dev. 12:462-472.
33. Kahn, J. D., E. Yun, and D. M. Crothers. 1994. Detection of localized DNA flexibility. Nature 368:163-166.
34. Kieff, A. B. R. A. E. 1996. Epstein-Barr virus and its replication, p. 2343. In B. N. Fields, D. M. Knipe, and P. M. Howley (ed.), Fields virology, 3rd ed. Lippincott-Raven Publishers, Philadelphia, Pa.
35. Kramer, H., M. Niemoller, M. Amouyal, B. Revet, B. von Wilcken-Bergmann, and B. Muller-Hill. 1987. lac repressor forms loops with linear DNA carrying two suitably spaced lac operators. EMBO J. 6:1481-1491.
36. Love, J. J., X. Li, D. A. Case, K. Giese, R. Grosschedl, and P. E. Wright. 1995. Structural basis for DNA bending by the architectural transcription factor LEF-1. Nature 376:791-795.
37. Maniatis, T., J. V. Falvo, T. H. Kim, T. K. Kim, C. H. Lin, B. S. Parekh, and M. G. Wathelet. 1998. Structure and function of the interferon-beta enhanceosome. Cold Spring Harb. Symp. Quant. Biol. 63:609-620.
38. Melvin, V. S., and D. P. Edwards. 1999. Coregulatory proteins in steroid hormone receptor action: the role of chromatin high mobility group proteins HMG-1 and -2. Steroids 64:576-586.
39. Oettinger, M. A. 1999. V(D)J recombination: on the cutting edge. Curr. Opin. Cell Biol. 11:325-329.
40. Ohndorf, U. M., M. A. Rould, Q. He, C. O. Pabo, and S. J. Lippard. 1999. Basis for recognition of cisplatin-modified DNA by high-mobility-group proteins. Nature 399:708-712.
41. Paull, T. T., M. Carey, and R. C. Johnson. 1996. Yeast HMG proteins NHP6A/B potentiate promoter-specific transcriptional activation in vivo and assembly of preinitiation complexes in vitro. Genes Dev. 10:2769-2781.
42. Paull, T. T., M. J. Haykinson, and R. C. Johnson. 1993. The nonspecific DNA-binding and -bending proteins HMG1 and HMG2 promote the assembly of complex nucleoprotein structures. Genes Dev. 7:1521-1534.
43. Ptashne, M., and A. Gann. 1998. Imposing specificity by localization: mechanism and evolvability. Curr. Biol. 8:R897.
44. Ramstein, J., D. Locker, M. E. Bianchi, and M. Leng. 1999. Domain-domain interactions in high mobility group 1 protein (HMG1). Eur. J. Biochem. 260:692-700.
45. Read, C. M., P. D. Cary, C. Crane-Robinson, P. C. Driscoll, and D. G. Norman. 1993. Solution structure of a DNA-binding domain from HMG1. Nucleic Acids Res. 21:3427-3436.
46. Saito, K., T. Kikuchi, H. Shirakawa, and M. Yoshida. 1999 The stabilized structural array of two HMG1/2-boxes endowed by a linker sequence between them is requisite for the effective binding of HMG1 with DNA. J. Biochem. (Tokyo) 125:399-405.
47. Stros, M. 1998. DNA bending by the chromosomal protein HMG1 and its high mobility group box domains. Effect of flanking sequences. J. Biol. Chem. 273:10355-10361.
48. Sugden, B., J. Yates, and W. Mark. 1984. Transforming functions associated with Epstein-Barr virus. J. Investig. Dermatol. 83:82s-87s.
49. Tantin, D., and M. Carey. 1994. A heteroduplex template circumvents the energetic requirement for ATP during activated transcription by RNA polymerase II. J. Biol. Chem. 269:17397-17400.
50. Teo, S. H., K. D. Grasser, and J. O. Thomas. 1995. Differences in the DNA-binding properties of the HMG-box domains of HMG1 and the sex-determining factor SRY. Eur. J. Biochem. 230:943-950.
51. van Gent, D. C., K. Hiom, T. T. Paull, and M. Gellert. 1997. Stimulation of V(D)J cleavage by high mobility group proteins. EMBO J. 16:2665-2670.
52. Verrier, C. S., N. Roodi, C. J. Yee, L. R. Bailey, R. A. Jensen, M. Bustin, and F. F. Parl. 1997. High-mobility group (HMG) protein HMG-1 and TATA-binding protein-associated factor TAF(II)30 affect estrogen receptor-mediated transcriptional activation. Mol. Endocrinol. 11:1009-1019.
53. Vinson, C. R., P. B. Sigler, and S. L. McKnight. 1989. Scissors-grip model for DNA recognition by a family of leucine zipper proteins. Science 246:911-916.
54. Wagner, J. P., D. M. Quill, and D. E. Pettijohn. 1995. Increased DNA-bending activity and higher affinity DNA binding of high mobility group protein HMG-1 prepared without acids. J. Biol. Chem. 270:7394-7398.
55. Wang, J. C., and G. N. Giaever. 1988. Action at a distance along a DNA. Science 240:300-304.
56. Webb, M., and J. O. Thomas. 1999. Structure-specific binding of the two tandem HMG boxes of HMG1 to four-way junction DNA is mediated by the A domain. J. Mol. Biol. 294:373-387.
57. Weir, H. M., P. J. Kraulis, C. S. Hill, A. R. Raine, E. D. Laue, and J. O. Thomas. 1993. Structure of the HMG box motif in the B-domain of HMG1. EMBO J. 12:1311-1319.
58. Yen, Y. M., B. Wong, and R. C. Johnson. 1998. Determinants of DNA binding and bending by the Saccharomyces cerevisiae high mobility group protein NHP6A that are important for its biological activities. Role of the unique N terminus and putative intercalating methionine. J. Biol. Chem. 273:4424-4435.
59. Yoshioka, K., K. Saito, T. Tanabe, A. Yamamoto, Y. Ando, Y. Nakamura, H. Shirakawa, and M. Yoshida. 1999. Differences in DNA recognition and conformational change activity between boxes A and B in HMG2 protein. Biochemistry 38:589-595.
60. Zappavigna, V., L. Falciola, M. H. Citterich, F. Mavilio, and M. E. Bianchi. 1996. HMG1 interacts with HOX proteins and enhances their DNA binding and transcriptional activation. EMBO J. 15:4981-4991.
61. Zhang, C. C., S. Krieg, and D. J. Shapiro. 1999. HMG-1 stimulates estrogen response element binding by estrogen receptor from stably transfected HeLa cells. Mol. Endocrinol. 13:632-643.
62. Zwilling, S., H. Konig, and T. Wirth. 1995. High mobility group protein 2 functionally interacts with the POU domains of octamer transcription factors. EMBO J. 14:1198-1208.