Mechanisms of sod2 gene amplification in Schizosaccharomyces pombe

Molecular Biology of the Cell

Volumn 11, Issue 3, 2000, Pages 873-886

  Albrecht, Elizabeth B ^a   Hunyady, Aaron B ^a   Stark, George R ^a   Patterson, Thomas E ^a  

^a LERNER RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIPORTER; PALINDROMIC DNA;

ARTICLE; CHROMOSOME 1; CHROMOSOME 2; DNA DAMAGE; GENE AMPLIFICATION; NONHUMAN; PRIORITY JOURNAL; SCHIZOSACCHAROMYCES POMBE; TELOMERE;

EUKARYOTA; SCHIZOSACCHAROMYCES POMBE;

EID: 0034061497     PISSN: 10591524     EISSN: None     Source Type: Journal    
DOI: 10.1091/mbc.11.3.873     Document Type: Article

References (40)

1. Alfa, C., Fantes, P., Hyams, J., McLeod, M., and Warbrick, E. (1993). Experiments with Fission Yeast: A Laboratory Manual, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
2. Andersson, D.I., Slechta, E.S., and Roth, J.R. (1948). Evidence that gene amplification underlies adaptive mutability of the bacterial lac operon. Science 282, 1133-1135.
3. Bishop, J.M. (1987). The molecular genetics of cancer. Science 235, 305-311.
4. Butler, D.K., Yasuda, L.E., and Yao, M.C. (1996). Induction of large DNA palindrome formation in yeast: implications for gene amplification and genome stability in eukaryotes. Cell 87, 1115-1122.
5. Church, G.M., and Gilbert, W. (1984). Genomic sequencing. Proc. Natl. Acad. Sci. USA 81, 1991-1995.
6. Cohen, S., Hassin, D., Karby, S., and Lavi, S. (1994). Hairpin structures are the primary amplification products: a novel mechanism for generation of inverted repeats during gene amplification. Mol. Cell. Biol. 14, 7782-7791.
7. Coquelle, A., Pipiras, E., Toledo, F., Buttin, G., and Debatisse, M. (1997). Expression of fragile sites triggers intrachromosomal mammalian gene amplification and sets boundaries to early amplicons. Cell 89, 215-225.
8. Edlund, T., and Normark, S. (1981). Recombination between short DNA homologies causes tandem duplication. Nature 292, 269-271.
9. Fan, J.B., Chikashige, Y., Smith, C.L., Niwa, O., Yanagida, M., and Cantor, C.R. (1989). Construction of a Notl restriction map of the fission yeast Schizosaccharomyces pombe genome. Nucleic Acids Res. 17, 2801-2818.
10. Ford, M., Davies, B., Griffiths, M., Wilson, J., and Fried, M. (1985). Isolation of a gene enhancer within an amplified inverted duplication after "expression selection." Proc. Natl. Acad. Sci. USA 82, 3370-3374.
11. Grondin, K., Papadopoulou, B., and Ouellette, M. (1993). Homologous recombination between direct repeat sequences yields P-glycoprotein containing amplicons in arsenite resistant Leishmania. Nucleic Acids Res. 21, 1895-1901.
12. Grondin, K., Roy, G., and Ouellette, M. (1996). Formation of extrachromosomal circular amplicons with direct or inverted duplications in drug-resistant Leishmania tarentolae. Mol. Cell. Biol. 16, 3587-3595.
13. Gysler-Junker, A., Bodi, Z., and Kohli, J. (1991). Isolation and characterization of Schizosaccharomyces pombe mutants affected in mitotic recombination. Genetics 128, 495-504.
14. Hightower, R.C., Ruiz-Perez, L.M., Wong, M.L., and Santi, D.V. (1988). Extrachromosomal elements in the lower eukaryote Leishmania. J. Biol. Chem. 263, 16970-16976.
15. Hoheisel, J.D., Maier, E., Mott, R., McCarthy, L., Grigohev, A.V., Schalkwyk, L.C., Nizetic, D., Francis, F., and Lehrach, H. (1993). High resolution cosmid and P1 maps spanning the 14 Mb genome of the fission yeast S. pombe. Cell 73, 109-120.
16. Holliday, R. (1964). A mechanism for gene conversion in fungi. Genet. Res. 5, 282-304.
17. + antiporter confers sodium and lithium tolerance in fission yeast. EMBO J. 11, 1631-1640.
18. Kimura, M., and Ota, T. (1974). On some principles governing molecular evolution. Proc. Natl. Acad. Sci. USA 71, 2848-2852.
19. Leach, D.R. (1994). Long DNA palindromes, cruciform structures, genetic instability and secondary structure repair. Bioessays 16, 893-900.
20. Mizukami, T., et al. (1993). A 13 kb resolution cosmid map of the 14 Mb fission yeast genome by nonrandom sequence-tagged site mapping. Cell 73, 121-132.
21. Moreno, S., Klar, A., and Nurse, P. (1991). Molecular genetic analysis of fission yeast Schizosaccharomyces pombe. Methods Enzymol. 194, 795-823.
22. Nasmyth, K.A. (1979). Genetic and enzymatic characterization of conditional lethal mutants of the yeast Schizosaccharomyces pombe with a temperature-sensitive DNA ligase. J. Mol. Biol. 130, 273-284.
23. Oram, M., Keeley, A., and Tsaneva, I. (1998). Holliday junction resolvase in Schizosaccharomyces pombe has identical endonuclease activity to the CCE1 homologue YDC2. Nucleic Acids Res. 26, 594-601.
24. Ouellette, M., Hettema, E., Wust, D., Fase-Fowler, F., and Borst, P. (1991). Direct and inverted DNA repeats associated with P-glycoprotein gene amplification in drug resistant Leishmania. EMBO J. 10, 1009-1016.
25. Patterson, T.E., Albrecht, E.B., Nurse, P., Sazer, S., and Stark, G.R. (1999). Effects of genome position and the DNA damage checkpoint on the structure and frequency of sod2 gene amplification in fission yeast. Mol. Biol. Cell 10, 2199-2208.
26. Sipiczki, M., Grossenbacher-Grunder, A.M., and Bodi, Z. (1990). Recombination and mating type switching in a ligase defective mutant of Schizosaccharomyces pombe. Mol. Gen. Genet. 220, 307-313.
27. Smith, K.A., Stark, M.B., Gorman, P.A., and Stark, G.R. (1992). Fusions near telomeres occur very early in the amplification of CAD genes in Syrian hamster cells. Proc. Natl. Acad. Sci. USA 89, 5427-5431.
28. Stark, G.R., Debatisse, M., Giulotto, E., and Wahl, G.M. (1989). Recent progress in understanding mechanisms of mammalian DNA amplification. Cell 57, 901-908.
29. Sugawara, N.F. (1988). DNA Sequences at Telomeres of the Fission Yeast Schizosaccharomyces pombe. Ph.D. Thesis. Cambridge, MA: Harvard University.
30. Uemura, T., Ohkura, H., Adachi, Y., Morino, K., Shiozaki, K., and Yanagida, M. (1987). DNA topoisomerase II is required for condensation and separation of mitotic chromosomes in S. pombe. Cell 50, 917-925.
31. Uemura, T., and Yanagida, M. (1984). Isolation of type I and II DNA topoisomerase mutants from fission yeast: single and double mutants show different phenotypes in cell growth and chromatin organization. EMBO J. 3, 1737-1744.
32. Walton, J.D., Paquin, C.E., Kaneko, K., and Williamson, V.M. (1986). Resistance to antimycin A in yeast by amplification of ADH4 on a linear, 42 kb palindromic plasmid. Cell 46, 857-863.
33. Whitby, M.C., and Dixon, J. (1997). A new Holliday junction resolving enzyme from Schizosaccharomyces pombe that is homologous to CCE1 from Saccharomyces cerevisiae. J. Mol. Biol. 272, 509-522.
34. White, T.C., Fase-Fowler, F., van Luenen, H., Calafat, J., and Borst, P. (1988). The H circles of Leishmania tarentolae are a unique amplifiable system of oligomeric DNAs associated with drug resistance. J. Biol. Chem. 263, 16977-16983.
35. Whoriskey, S.K., Nghiem, V.H., Leong, P.M., Masson, J.M., and Miller, J.H. (1987). Genetic rearrangements and gene amplification in Escherichia coli: DNA sequences at the junctures of amplified gene fusions. Genes Dev. 1, 227-237.
36. Windle, B., Draper, B.W., Yin, Y.X., O'Gorman, S., and Wahl, G.M. (1991). A central role for chromosome breakage in gene amplification, deletion formation, and amplicon integration. Genes Dev. 5, 160-174.
37. Wu, D.G., Wu, C.H., and Black, LW. (1991). Reiterated gene amplifications at specific short homology sequences in phage T4 produce Hp17 mutants. J. Mol. Biol. 218, 705-721.
38. Wu, D.G., and Black, L.W. (1987). Gene amplification mechanism for the hyperproduction of T4 bacteriophage gene 17 and 18 proteins. J. Mol. Biol. 295, 769-783.
39. Yao, M.C., Zhu, S.G., and Yao, C.H. (1985). Gene amplification in Tetrahymena thermophila: formation of extrachromosomal palindromic genes coding for rRNA. Mol. Cell. Biol. 5, 1260-1267.
40. Yasuda, L.F., and Yao, M.C. (1991). Short inverted repeats at a free end signal large palindromic DNA formation in Tetrahymena. Cell 67, 505-516.