Molecular architecture of bryophyte genes: Putative polyadenylation signals in c DNA 3'-ends of the desiccation-tolerant moss Tortula ruralis

Bryologist

Volumn 103, Issue 1, 2000, Pages 44-51

  Wood, Andrew J ^a   Duff, R Joel ^a,c   Zeng, Qin ^a   Oliver, Melvin J ^b  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

^b Plant Stress and Water Conserv Lab   (United States)

^c UNIVERSITY OF AKRON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BRYOPHYTA; BRYOPHYTES; EMBRYOPHYTA; MAGNOLIOPHYTA; PTERIDOPHYTA; TORTULA RURALIS;

EID: 0034059530     PISSN: 00072745     EISSN: None     Source Type: Journal    
DOI: 10.1639/0007-2745(2000)103[0044:MAOBGP]2.0.CO;2     Document Type: Article

References (39)

1. ALTSCHUL, S. F., W. GISH, W. MILLER, E. W. MYERS & D. J. LIPMAN. 1990. Basic local alignment search tool. Journal of Molecular Biology 215: 403-410.
2. BEWLEY, J. D. 1979. Physiological aspects of desiccation-tolerance. Annual Review of Plant Physiology 30: 195-238.
3. CHAUBET, N., M. CHABOUTE, B. CLEMENT, M. EHLING, G. PHILIPPS & C. GIGOT. 1988. The histone H3 and H4 mRNAs are polyadenylated in maize. Nucleic Acids Research 16: 1295-1304.
4. DAVIDSON, E. H. 1986. Gene Activity in Early Development. Academic Press, NY.
5. DUFF, R. J., M. J. OLIVER, A. J. WOOD. 1999. A Tortula ruralis cDNA encoding small-subunit ribosomal protein S3a: polysomal retention of transcript in response to desiccation and rehydration. THE BRYOLOGIST 102: 418-425.
6. GALLIE, D. R. 1993. Posttranscriptional regulation of gene expression in plants. Annual Review of Plant Physiology and Plant Molecular Biology 44: 77-105.
7. _. 1996. Translational control of cellular and viral mRNAs. Plant Molecular Biology 32: 145-158.
8. HUNT, A. G. 1988. Identification and characterization of cryptic polyadenylation sites in the 3′ region of a pea ribulose-1,5-bisphosphate carboxylase small subunit gene. DNA 7: 329-336.
9. _. 1994. Messenger RNA 3′ end formation in plants. Annual Review of Plant Physiology and Plant Molecular Biology 45: 47-60.
10. JOSHI, C. P. 1987. Putative polyadenylation signals in nuclear genes of higher plants: a compilation and analysis. Nucleic Acids Research 15: 9627-9640.
11. LUEHRSEN, K. R. & V. WALBOT. 1994. Intron creation and polyadenylation in maize are directed by AU-rich RNA. Genes and Development 8: 1117-1130.
12. MANLEY, J. L. & N. J. PROUDFOOT. 1994. RNA 3′-ends: formation and function-meeting review. Genes and Development 8: 259-264.
13. MCKNIGHT, S. L., M. J. OLIVER & C. L. PUTNAM-EVANS. 1997. Nucleotide sequence of a full-length cDNA (Accession No. U82087) encoding a calmodulin-like domain protein kinase (CDPK) from the moss Tortula ruralis (PGR97-123). Plant Physiology 115: 313.
14. MEHDY, M. C. & M. R. BRODL. 1998. The role of stress in regulating mRNA stability, pp. 54-63. In J. Bailley-Serres & D. R. Gallie (eds.), A Look Beyond Transcription: Mechanisms Determining mRNA Stability and Translation in Plants American Society of Plant Physiologists, Rockville, MD.
15. MINICH, W. B. & L. P. OVCHINNIKOV. 1992. Role of cytoplasmic mRNP proteins in translation. Biochimie 74: 477-483.
16. MISHLER B. D. & S. P. CHURCHILL. 1985. Transition to a land flora: Phylogenetic relationships of the green algae and bryophytes. Cladistics 1: 305-328.
17. _, L. A. LEWIS, M. A. BRUCHHEIM, K. S. RENZAGLIA, D. J. GARBARY, C. F. DELWICHE, F. W. ZECHMAN, T. S. KANTZ & R. L. CHAPMAN. 1994. Phylogenetic relationships of the "green algae" and "bryophytes". Annals of the Missouri Botanical Garden 81: 451-483.
18. MOGEN, B. D., M. H. MACDONALD, G. LEFFEWIE & A. G. HUNT. 1990. Upstream sequences other than AAUAAA are required for efficient messenger RNA 3′-end formation in plants. Plant Cell 2: 1261-1272.
19. OLIVER, M. J. 1991. Influence of protoplasmic water loss on the control of protein synthesis in the desiccation-tolerant moss Tortula ruralis: Ramifications for a repair-based mechanism of desiccation-tolerance. Plant Physiology 97: 1501-1511.
20. _ & J. D. BEWLEY. 1997. Desiccation-tolerance of plant tissues: a mechanistic overview. Horticultural Reviews 18: 171-212.
21. _ & A. J. WOOD. 1997. Desiccation-tolerance of mosses, pp. 1-26. In T. Koval (ed.), Stress-inducible Processes in Higher Eukaryotic Cells. Plenum Publishing Corp., NY.
22. _, _ & P. O'MAHONY. 1997. How some plants recover from vegetative desiccation: A repair based strategy. Acta Physiologia Plantarum 19: 419-425.
23. _, _ & _. 1998. "To dryness and beyond" - preparation for the dried state and rehydration in vegetative desiccation-tolerant plants. Plant Growth and Regulation 24: 193-201.
24. PRAMANIK, S. K., J. E. KROCHKO & J. D. BEWLEY. 1992. Distribution of cytosolic mRNAs between polysomal and ribonucleoprotein complex fractions in alfalfa embryos. Plant Physiology 99: 1590-1596.
25. ROTHNIE, H. M. 1996. Plant mRNA 3′-end formation. Plant Molecular Biology 32: 43-61.
26. _, J. REID & T. HOHN. 1994. The contribution of AAUAAA and the upstream element UUUGUA to the efficiency of mRNA 3′-end formation in plants. EMBO Journal 13: 2200-2210.
27. SACHS, A. 1990. The role of poly (A): a review. Gene 91: 151-158.
28. SAMBROOK, J., E. F FRITSCH & T. MANIATIS. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Press, Cold Spring Harbor, NY.
29. SANGER, F., S. NICKLEN & A. R. COULSON. 1977. DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Science USA 74: 5463-5467.
30. SCOTT, H. B. II & M. J. OLIVER. 1994. Accumulation and polysomal recruitment of transcripts in response to desiccation and rehydration of the moss Tortula ruralis. Journal of Experimental Botany 45: 577-583.
31. SHEETS, M. D., S. C. OGG & M. P. WICKENS. 1990. Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro. Nucleic Acids Research 18: 5799-5805.
32. SILVERSTEIN, E. 1973. Subribosomal ribonucleoprotein particles of developing wheat embryo. Biochemie 12: 951-958.
33. SPIRIN, A. S., N. V. BELITSINA & M. A. AJTKHOZHIN. 1964. Messenger RNA in early embryogenesis. Zhurnal Obshchei Biologii 25: 321-338.
34. WAHLE, E. 1995. 3′-end cleavage and polyadenylation of mRNA precursors. Biochimica Biophysica Acta 1261: 183-194.
35. WOOD, A. J., R. J. DUFF & M. J. OLIVER. 1999. Expressed sequence tags (ESTs) from desiccated Tortula ruralis identify a large number of novel plant genes. Plant and Cell Physiology 40: 361-368.
36. _ & M. J. OLIVER. 1999. Translational control in plant stress: Characterization of ribonucleoprotein particles (mRNPs) in desiccated Tortula ruralis. The Plant Journal 18: 359-370.
37. WU, I., T. UEDA & J. MESSING. 1993. 3′-end processing of the maize 27 kDa zein mRNA. The Plant Journal 4: 535-544.
38. _, _ & _. 1995. The formation of mRNA 3′-ends in plants. The Plant Journal 8: 323-329.
39. ZAR, J. H. 1999. Testing for goodness of fit, pp. 461-485. In Biostatistical Analysis, Prentice-Hall, Upper Saddle River, NJ.