The design of specific primers for the detection of Ralstonia solanacearum in soil samples by polymerase chain reaction

Botanical Bulletin of Academia Sinica

Volumn 41, Issue 2, 2000, Pages 121-128

  Lee, Yung An ^a   Wang, Chi Chung ^a  

^a FU JEN CATHOLIC UNIVERSITY   (Taiwan)

Author keywords

Erwinia; Polymerase chain reaction; Pseudomonas; Ralstonia solanacearum; Xanthomonas

Indexed keywords

BACTERIAL DNA; BACTERIUM DETECTION; DNA DNA HYBRIDIZATION; DNA FRAGMENT; DNA ISOLATION; DNA PROBE; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIMER DNA;

EID: 0034058760     PISSN: 00068063     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Boucher, C.A., P.A. Barberis, A.P. Trigalet, and D.A. Demery. 1985. Transposon mutagenesis of Pseudomonas solanacearum: isolation of Tn5-induced avirulent mutants. J. Gen. Microbiol. 131: 2449-2457.
2. Brook, M.D., B. Currie, and P.M. Desmarchelier. 1997. Isolation and identification of Burkholderia pseudomallei from soil using selective culture techniques and the polymerase chain reaction. J. Appl. Microbiol. 82: 589-596.
3. Buddenhagen, I.W. 1986. Bacterial wilt revisited. In G.J. Persley (ed.), Bacterial Wilt Disease in Asia and the South Pacific. Proceedings of an international Workshop, PCARRD, Los Banos, Philippines: Australia Centre for International Agricultural Research Proceedings 13, pp. 126-143.
4. Buddenhagen, I.W. and A. Kelman. 1964. Biological and physiological aspects of bacterial wilt caused by Pseudomonas solanacearum. Annu. Rev. Phytopathol. 2: 203-230.
5. Buddenhagen, I.W., L. Sequeira, and A. Kelman. 1962. Designation of races in Pseudomonas solanacearum. Phytopathology 52: 726. (Abstract)
6. Chao, Y.C., W.J. Liang, L.L. Huang, W.C. Ho, and C.H. Tsai. 1995. Bacterial wilt of Texas blue bell (Eustoma grandiflorum L.). Plant Pathol. Bull. (Taiwan) 4: 193-195.
7. Chowdhury, K. 1991. One step miniprep method for the isolation of plasmid DNA. Nucleic Acids Res. 19: 2792.
8. Ciampi, L., L. Sequeira, and E.R. French. 1980. Latent infection of potato tubers by Pseudomonas solanacearum. Am. Potato J. 57: 377-386.
9. Cook, D., E. Barlow, and L. Sequeira. 1989. Genetic diversity of Pseudomonas solanacearum: detection of restriction fragment length polymorphisms that specify virulence and the hypersensitive response. Mol. Plant-Microbe Interact. 2: 113-121.
10. Cook, D. and L. Sequeira. 1991. The use of subtractive hybridization to obtain a DNA probe specific for Pseudomonas solanacearum race 3. Mol. Gen. Genet. 227: 401-410.
11. Hänni, C., T. Brousseau, V. Laudet, and D. Stehelin. 1995. Isopropanol precipitation removes PCR inhibitors from ancient extracts. Nucleic Acids Res. 23: 881-882.
12. Hayward, A.C. 1964. Characteristics of Pseudomonas solanacearum. J. Appl. Bact. 27: 265-277.
13. Hayward, A.C. 1991. Biology and epidemiology of bacterial wilt caused by Pseudomonas solanacearum. Annu. Rev. Phytopathol. 29: 65-87.
14. He, L. Y., L. Sequeira, and A. Kelman. 1983. Characteristics of strains of Pseudomonas solanacearum from China. Plant Dis. 67: 1357-1361.
15. Hong, W.F., S.T. Hsu, and K.C. Tzeng. 1990. Bacterial wilt of perilla caused by Pseudomonas solanacearum. Plant Pathol. Bull. (Taiwan) 32: 327-328.
16. Hsu, S.T. 1991. Ecology and control of Pseudomonas solanacearum in Taiwan. Plant Prot. Bull. (Taiwan) 33: 72-79.
17. Ito, S., Y. Ushijima, T. Fujii, S. Tanaka, M. Kameya-Iwaki, S. Yoshiwara, and F. Kishi. 1998. Detection of viable cells of Ralstonia solanacearum in soil using a semiselective medium and a PCR technique. J. Phytopathol. 146: 379-384.
18. Li, X., M. Dorsch, T. Del Dot, L. I. Sly, E. Stackebrandt, and A.C. Hayward. 1993. Phylogenetic studies of the rRNA group II Pseudomonas based on 16S rRNA gene sequences. J. Appl. Bact. 74: 324-329.
19. Lin, C.H., S.T. Hsu, and K.C. Tzeng. 1994. Radish (Rapliamis salivus L.), a new host of Pseudomonas solanacearum in Taiwan. Plant Pathol. Bull. (Taiwan) 3: 147-155.
20. Opina, N., F. Tavner, G. Holloway, J.-F. Wang, T.-H. Li, R. Maghirang, M. Fegan, A.C. Hayward, V. Krishnapillai, W. F. Hong, B.W. Holloway, and J.N. Timmis. 1997. A novel method for development of species and strain-specific DNA probes and PCR primers for identifying Burkholderia solanacearum (formerly Pseudomonas solanacearum). As. Pac. J. Mol. Biol. Biotechnol. 5: 19-33.
21. Sambrook, J., E.F. Fritsch, and T. Maniatis. 1989. Molecular cloning. A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
22. Sanger, F., S. Nicklen, and A.R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
23. Seal, S.E. 1995. PCR-based detection and characterization of Pseudomonas solanacearum for use in less developed countries. EPPO Bull. 25: 227-231.
24. Seal, S.E., L.A. Jackson, and M.J. Daniels. 1992a. Isolation of a Pseudomonas solanacearum-specific DNA probe by subtraction hybridization and construction of species-specific oligonucleotide primers for sensitive detection by the polymerase chain reaction. Appl. Environ. Microbiol. 58: 3751-3758.
25. Seal, S.E., L.A. Jackson, and M.J. Daniels. 1992b. Use of tRNA consensus primers to indicate subgroups of Pseudomonas solanacearum by polymerase chain reaction amplification. Appl. Environ. Microbiol. 58: 3759-3761.
26. Seal, S.E., L.A. Jackson, J.P.W. Young, and M.J. Daniels. 1993. Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease bacterium by partial 16S rRNA sequencing-construction of oligonucleotide primers for sensitive detection by poly-merase chain reaction. J. Gen. Microbiol. 139: 1587-1594.
27. Seal, S.E., M. Taghavi, N. Fegan, A. C. Hayward, and M. Fegan. 1999. Determination of Ralstonia (Pseudomonas) solanacearum rDNA subgroups by PCR tests. Plant Pathol. 48: 115-120.
28. Su, C.C. and L.S. Leu. 1995. Bacterial wilt of anthurium caused by Pseudomonassolanacearum. Plant Pathol. Bull. (Taiwan) 4: 34-38.
29. Taghavi, M., C. Hayward, L.I. Sly, and M. Fegan. 1996. Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium based on 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 46:10-15.
30. Tsai, Y.-L. and B.H. Olson. 1992. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl. Environ. Microbiol. 58: 754-757.
31. Yang, T.H., S.T. Hsu, and K.C. Tzeng. 1980. Studies on bird-of-paradise strains of Pseudomonas solanacearum-physiological characteristics, pathogenicity and lectin induction. J. Agric. For. (Taiwan) 29: 119-133.
32. Yabuuchi, E., Y. Kosako, I. Yano, H. Hotta, and Y. Nishiuchi. 1995. Transfer of two Burkholderia and an Alcaligenes species to Ralstonia gen. Nov.: Proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. Nov., Ralstonia solanacearum (Smith 1896) comb. Nov. and Ralstonia eutropha (Davis 1969) comb. Nov. Microbiol. Immunol. 39: 897-904.