Construction of a bacterial artificial chromosome (BAC) library for potato molecular cytogenetics research

Genome

Volumn 43, Issue 1, 2000, Pages 199-204

  Song, Junqi ^a   Dong, Fenggao ^a   Jiang, Jiming ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

BAC library; Chromosome identification; Molecular cytogenetics; Physical mapping; Potato

Indexed keywords

BACTERIAL ARTIFICIAL CHROMOSOME LIBRARY; CHROMOSOMAL LOCALIZATION; CHROMOSOME IDENTIFICATION; CLONE; DIPLOIDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENE INSERTION SEQUENCE; GENE TAGGING; MEIOSIS; MOLECULAR GENETICS; MOLECULAR MAPPING; PACHYTENE; PLANT GENOME;

BACTERIA (MICROORGANISMS); EMBRYOPHYTA; SOLANUM BULBOCASTANUM; SOLANUM TUBEROSUM; TUBEROSUM;

EID: 0034058381     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g99-099     Document Type: Article

References (38)

1. Arumuganathan, K., and Earle, E.D. 1991. Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
2. Bonierbale, M.W., Plaisted, R.L., and Tanksley, S.D. 1988. RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics, 120: 1095-1103.
3. Choi, S., Creelman, R.A., Mullet, J.E., and Wing, R.A. 1995. Construction and characterization of a bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol. Biol. Rep. 13: 124-128.
4. Cohen, D., Chumakov, I., and Welssenbach, J. 1993. A first-generation physical map of the human genome. Nature, 366: 698-701.
5. Dong, F., Novy, R.G., Helgeson, J.P., and Jiang, J. 1999. Cytological characterization of potato-Solanum etuberosum somatic hybrids and their backcross progenies by genomic in situ hybridization. Genome, 42: 987-992.
6. Frijters, A.C.J., Zhang, Z., van Damme, M., Wang, G.L., Ronald, P.C., and Michelmore, R.W. 1997. Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor. Appl. Genet. 94: 390-399.
7. Fuchs, J., Kloos, D.-U., Ganal, M.W., and Schubert, I. 1996. In situ localization of yeast artificial chromosome sequences on tomato and potato metaphase chromosomes. Chromosome Res. 4: 277-281.
8. Gebhardt, C., Ritter, E., Barone, A., Debener, T., Walkemeier, B., Schachtschabel, U., Kaufmann, H., Thompson, R.D., Bonierbale, M.W., Ganal, M.W., Tanksley, S.D., and Salamini, F. 1991. RFLP maps of potato and their alignment with the homoeologous tomato genome. Theor. Appl. Genet. 83: 49-57.
9. Gebhardt, C., Ritter, E., and Salamini, F. RFLP map of the potato. In DNA-based Markers in Plants. 2nd ed. Edited by Phillips, R.L., and Vasil, I.K. Kluwer Academic Publishers. Dordrecht, The Netherlands. In press.
10. Gerlach, W.L., and Bedbrook, J.R. 1979. Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res. 7: 1869-1885.
11. Gerlach, W.L., and Dyer, T.A. 1980. Sequence organization of the repeated units in the nucleus of wheat which contain 5S-rRNA genes. Nucleic Acids Res. 8: 4851-4865.
12. Hanson, R.E., Zwick, M.S., Choi, S.D., Islam-Faridi M.N., Mcknight, T.D, Wing, R.A., Price, H.J., and Stelly, D.M. 1995. Fluorescent in situ hybridization of a bacterial artificial chromosome. Genome, 38: 646-651.
13. Jiang, J., Gill, B.S., Wang, G.L., Ronald, P.C., and Ward, D.C. 1995. Metaphase and interphase fluorescence in situ hybridization mapping of the rice genome with bacterial artificial chromosomes. Proc. Natl. Acad. Sci. U.S.A. 92: 4487-4491.
14. Jiang, J., Hulbert, S.H., Gill, B.S., and Ward, D.C. 1996. Interphase fluorescence in situ hybridization: A physical mapping strategy for plant species with large complex genomes. Mol. Gen. Genet. 252: 497-502.
15. Johnston, S.A., and Hanneman, R.E. 1982. Manipulation of Endosperm Balance Number overcome crossing barriers between diploid Solanum species. Science, 217: 446-448.
16. Landsmann, J., and Uhrig, H. 1985. Somaclonal variation in Solanum tuberosum detected at the molecular level. Theor. Appl. Genet. 71: 500-505.
17. Lapitan, N.L.V., Brown, S.E., Kennard, W., Stephens, J.L., and Knudson, D.L. 1997. FISH physical mapping with barley BAC clones. Plant J. 11: 149-156.
18. Lee, H.K., and Hanneman, R.E. 1976. Identification of the extra chromosomes in Giemsa stained somatic cells of pachytene identified trisomics of Solanum chacoense. Can. J. Genet. Cytol. 18: 297-302.
19. Leister, D., Berger, A., Thelen, H., Lehmann, W., Salamini, F., and Gebhardt, C. 1997. Construction of a potato YAC library and identification of clones linked to the disease-resistance loci R1 and Gro1. Theor. Appl. Genet. 95: 954-960.
20. Marek, L.F., and Shoemaker, R.C. 1997. BAC contig development by fingerprint analysis in soybean. Genome, 40: 420-427.
21. Miller, J.T., Dong, F., Jackson, S.A., Song, J., and Jiang, J. 1998. Retrotransposon-related DNA sequences in the centromeres of grass chromosomes. Genetics, 150: 1615-1623.
22. Mok, D.W.S., and Peloquin, S.J. 1975a. Three mechanisms of 2n pollen formation in potatoes. Can. J. Genet. Cytol. 17: 217-215.
23. Mok, D.W.S., and Peloquin, S.J. 1975b. The inheritance of diplandroid (2n pollen) formation in diploid potatoes. Heredity, 35: 295-302.
24. Mok, D.W.S., Lee, H.K., and Peloquin, S.J. 1974. Identification of potato chromosomes with Giemsa. Am. Potato J. 51: 337-341.
25. Nizetic, D., Drmanac, R., and Lehrach, H. 1990. An improved bacterial colony lysis procedure enables direct DNA hybridization using short (10, 11 bases) oligonucleotides to cosmids. Nucleic Acids Res. 19: 182.
26. Peloquin, S.J., and Ortiz, R. 1992. Techniques for introgressing unadapted germplasm to breeding populations. In Plant Breeding in the 1990s. Edited by H.T. Stalker and J.P. Murphy. C.A.B. International, Wallingford, U.K. pp. 485-507.
27. Pijnacker, L.P., and Ferwerda, M.A. 1984. Giemsa C-banding of potato chromosomes. Can. J. Genet. Cytol. 26: 415-419.
28. Ramanna, M.S., and Wagenvoort, M. 1976. Identification of the trisomic series in diploid Solanum tuberosum L., group tuberosum. I. Chromosome identification. Euphytica, 25: 233-240.
29. Richards, E.J., and Ausubel, F.M. 1988. Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell, 53: 127-136.
30. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular Cloning: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
31. Schweizer, G., Borisjuk, N., Borisjik, L., Stadler, M., Stelzer, T., Schilde, L., and Hemleben, V. 1993. Molecular analysis of repeated genome fractions in Solanum and their use as markers for the characterization of species and cultivars. Theor. Appl. Genet. 85: 801-808.
32. Tao, Q., Zhao, H., Qiu, L., and Hong, G. 1994. Construction of a full bacterial artificial chromosome (BAC) library of Oryza sativa genome. Cell Res. 4: 127-133.
33. Wang, G.L., Holsten, T.E., Song, W.Y., Wang, H.P., and Ronald, P. 1995. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J. 7: 525-533.
34. Ward, E.R., and Jen, G.C. 1990. Isolation of single-copy-sequence clones from a yeast artificial chromosome library of randomly sheared Arabidopsis thaliana. Plant. Mol. Biol. 14: 561-568.
35. Wilkinson, M.J., Bennett, S.T., Clulow, S.A., Allainguillaume, J., Harding, K., and Bennett, M.D. 1995. Evidence for somatic translocation during potato dihaploid induction. Heredity, 74: 146-151.
36. Woo, S.S., Jiang, J., Gill, B.S., Paterson, A.H., and Wing, R.A. 1994. Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucleic Acids Res. 22: 4922-4931.
37. Yeh, B.P., and Peloquin, S.J. 1965. Pachytene chromosomes of the potato (Solanum tuberosum, Group Andigena). Am. J. Bot. 52: 1014-1020.
38. Zhang, H.B., Zhao, X., Ding, X., Paterson, A.H., and Wing, R.A. 1995. Preparation of megabase-sized DNA from plant nuclei. Plant J. 7: 175-184.