Conformation and local environment of nucleotides bound to HIV type 1 reverse transcriptase (HIV-1 RT) in the ground state

Nucleosides, Nucleotides and Nucleic Acids

Volumn 19, Issue 1-2, 2000, Pages 13-29

  Painter, George R ^a   Andrews, C Webster ^b   Furman, Phillip A ^a  

^a Triangle Pharmaceuticals   (United States)

^b GLAXOSMITHKLINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYADENOSINE TRIPHOSPHATE; NUCLEOSIDE TRIPHOSPHATE; NUCLEOTIDE; RNA DIRECTED DNA POLYMERASE; THYMIDINE TRIPHOSPHATE; VIRUS ENZYME;

ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CONFORMATION; ENZYME BINDING; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR MODEL; NUCLEAR OVERHAUSER EFFECT;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0034055103     PISSN: 15257770     EISSN: None     Source Type: Journal    
DOI: 10.1080/15257770008032994     Document Type: Article

References (39)

1. Hoffman A.D., Banapour B. and Levy J.A. 1985 Virology 147, 326-335.
2. DiMarzo, V.F., Copeland, T.D., DeVico, A.L., Rahman, R., Orozlan, S., Gallo, R.C. and Sarngadharan, M.G. 1986 Science 231, 1289-1291.
3. Johnson, M.S., McClure, M.A., Feng, D.-F., Gray J. and Doolittle R.F. 1986 Proc. Natl. Acad. Sci. U.S.A. 83, 7648-7652.
4. Hansen J., Schulze T., Mellert W. and Moelling K. 1988 EMBO J. 7, 239-243.
5. Majumdar C., Abbotts J., Broder S. and Wilson S.H. 1988 J. Biol. Chem. 263, 15657-15665.
6. Bryant F.R., Johnson K.A. and Benkovic S.J. 1983 Biochemistry 22, 3537-3546
7. Hopkins S., Furman P.A. and Painter G.R. 1989 Biochem. Biophys. Res. Commun. 163, 106-110.
8. Kohlstaedt L.A., Wang J., Friedman J.M., Rice P.A. and Steitz T.A. 1992 Science 256, 1783-1790.
9. Arnold E., Jacobs-Molino A., Nann R.G., Williams R.L., Lu X., Ding J., Clark Jr, A.D., Zhang, A., Ferris A.L., Clark P., Hizi A. and Hughes S.H. 1992 Nature 367, 85-89.
10. Huang H., Chopra R., Verdine G.L. and Harrison, S.C. 1998 Science 282, 1669-1675.
11. Ferrin L.J. and Mildvan A.S. 1985 Biochemistry 24, 6904-6913.
12. Tisdale M., Ertl P., Larder B.A., Purifoy D.J., Darby G. and Powell K.L. 1988 J. Virol. 62, 3662-3667
13. Altman S. and Lerman L.S. 1970 J. Mol. Biol. 50, 235-261.
14. Painter G.R., Wright L.L., Hopkins S. and Furman P.A. 1991 J. Biol. Chem. 266, 19362-19368.
15. Brewer J.M., Pesce A.J. and Ashworth R.B. 1974 Experimental Techniques in Biochemistry, Prentice-Hall, Englewood Cliffs, p. 364.
16. Gibbons W.A., Beyer C.F., Dadok J., Sprecher R.F. and Wyssbrod H.R 1975 Biochemistry 14, 420-429.
17. Glasel J.A. 1989 J. Mol. Biol. 209, 747-761.
18. James T.L. 1975 Nuclear Magnetic Resonance in Biochemistry: Principles and Applications pp. 59-60, Academic Press, New York.
19. nd ed. pp 272-273, W.H. Freeman and Co., New York.
20. Olejniczak E.T., Poulsen F.M. and Dobson C.M. 1981 J. Am. Chem. Soc. 103, 6574-6580.
21. Dobson C.M., Olejniczak ET., Poulsen F.M. and Ratcliffe R.G. 1982 J. Magn. Reson. 48, 97-110.
22. Clore, G.M. and Gronenborn, A.M. 1982 J. Magn. Reson. 48, 402-417.
23. Clore G.M. and Gronenborn A.M. 1983 J. Magn. Reson. 53, 423-442.
24. Noggle J.H. and Schirmer R.E. 1971. The Nuclear Overhauser Effect: Chemical Applications pp. 45-50, Academic Press, New York.
25. Mohamadi F., Richards N.G.J., Guida W.C., Liskcamp R., Lipton M., Caulfield C., Chang G., Hendrickson T. and Still W.C. 1990 J. Comp. Chem. 11, 440-467.
26. Weiner S.J., Kollman P.A., Nguyen D.T. and Case D.A. 1986 J. Comput. Chem. 7, 230-252.
27. Painter G.R., Shockcor J.P. and Andrews C.W. 1990 Adv. Mol. Model. 2, 135-163.
28. Birnbaum, G.I., Giziewicz, J., Gabe, E.J., Lin, T.-S. and Prussoff, W.H. 1987 Can. J. Chem. 65, 2135-2139.
29. Singh U.C. and Kollman P.A. 1984 J. Comput. Chem. 5, 129-145.
30. Herzyk P., Beveridge A. and Neidle S. 1987 Biochem. Biophys. Res. Commun. 145, 1356-1361.
31. Hassnoot A. 1992 J. Amer. Chem. Soc. 114, 882-888.
32. Fry D., Cook C., Pritcher R., Greeley D., Huryn D., Holman M., Gruninger-Leitch F. and Sim I. 1990 FASEB J. 4, A1841.
33. Plochocka A., Rabczenko A. and Davis D.B. 1981 J. Chem. Soc. Perkin H, 82-89.
34. Saenger, W. 1984 Principles of Nucleic Acid Structure, pp. 79-82, Springer-Verlag, New York.
35. rd Ed. 2, 67-114.
36. nd ed. pp 150-151, W.H. Freeman and Co., New York.
37. Cheng N., Painter G.R. and Furman P.A. 1991 Biochem. Biophys. Res. Commun. 174, 785-789.
38. Larder B.A. and Kemp S.D. 1989 Science 246, 1155-1158.
39. St. Clair M.H., Martin J.L., Tudor-Williams G., Bach M.C., Vavro C.L., King D.M., Kellam P., Kemp S.D. and Larder B.A. 1991 Science 253, 1557-1559.