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Volumn 2, Issue 3, 2000, Pages 283-289

Characterization of fcp4 and fcp12, two additional genes encoding light harvesting proteins of Cyclotella cryptica (Bacillariophyceae) and phylogenetic analysis of this complex gene family

Author keywords

Chromophytic algae; Diatoms; Fucoxanthin chlorophyll a c binding proteins; Light harvesting complex; Photosynthesis; Phylogeny

Indexed keywords

CLONE; COMPLEMENTARY DNA; FCP12 GENE; FCP4 GENE; FUCOXANTHIN CHLOROPHYLL PROTEIN; GENE SEQUENCING; LIGHT HARVESTING COMPLEX; MOLECULAR WEIGHT; OPEN READING FRAME; PHYLOGENY; PROTEIN BINDING; PROTEIN SUBUNIT; SEQUENCE HOMOLOGY;

EID: 0034044153     PISSN: 14358603     EISSN: None     Source Type: Journal    
DOI: 10.1055/s-2000-3702     Document Type: Article
Times cited : (37)

References (36)
  • 1
    • 0028928697 scopus 로고
    • The gene family encoding the fucoxanthin chlorophyll proteins from the brown alga Macrocystis pyrifera
    • Apt, K. E., Clendennen, S. K., Powers, D. A., and Grossman, A. R. (1995) The gene family encoding the fucoxanthin chlorophyll proteins from the brown alga Macrocystis pyrifera. Mol. Gen. Genet. 246, 455-464.
    • (1995) Mol. Gen. Genet. , vol.246 , pp. 455-464
    • Apt, K.E.1    Clendennen, S.K.2    Powers, D.A.3    Grossman, A.R.4
  • 2
    • 0025995350 scopus 로고
    • Targeting proteins to diatom plastids involves transport through an endoplasmic reticulum
    • Bhaya, D. and Grossman, A. R. (1991) Targeting proteins to diatom plastids involves transport through an endoplasmic reticulum. Mol. Gen. Genet. 229, 400-404.
    • (1991) Mol. Gen. Genet. , vol.229 , pp. 400-404
    • Bhaya, D.1    Grossman, A.R.2
  • 3
    • 0027522130 scopus 로고
    • Characterization of gene clusters encoding the fucoxanthin chlorophyll proteins of the diatom Phaeodactylum tricornutum
    • Bhaya, D. and Grossman, A. R. (1993) Characterization of gene clusters encoding the fucoxanthin chlorophyll proteins of the diatom Phaeodactylum tricornutum. Nucleic Acids Res. 21, 4458-4466.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4458-4466
    • Bhaya, D.1    Grossman, A.R.2
  • 4
    • 0029818404 scopus 로고    scopus 로고
    • Gene structure of a chlorophyll a/c-binding protein from a brown alga: Presence of an intron and phylogenetic implications
    • Caron, L., Douady, D., Quinet-Szely, M., DeGoer, S., and Berkaloff, C. (1996) Gene structure of a chlorophyll a/c-binding protein from a brown alga: Presence of an intron and phylogenetic implications. J. Mol. Evol. 43, 270-280.
    • (1996) J. Mol. Evol. , vol.43 , pp. 270-280
    • Caron, L.1    Douady, D.2    Quinet-Szely, M.3    DeGoer, S.4    Berkaloff, C.5
  • 5
    • 0032951790 scopus 로고    scopus 로고
    • A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications of plastid evolution
    • Durnford, D. G., Deane, J. A., Tan, S., McFadden, G. I., Gantt, E., and Green, B. R. (1999) A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications of plastid evolution. J. Mol. Evol. 48, 59-68.
    • (1999) J. Mol. Evol. , vol.48 , pp. 59-68
    • Durnford, D.G.1    Deane, J.A.2    Tan, S.3    McFadden, G.I.4    Gantt, E.5    Green, B.R.6
  • 6
    • 0030468303 scopus 로고    scopus 로고
    • The fucoxanthin-chlorophyll proteins from a chromophyte alga are part of a large multigene family: Structural and evolutionary relationships to other light-harvesting antennae
    • Durnford, D. G., Aebersold, R. and Green, B. R. (1996) The fucoxanthin-chlorophyll proteins from a chromophyte alga are part of a large multigene family: structural and evolutionary relationships to other light-harvesting antennae. Mol. Gen. Genet. 253, 377-386.
    • (1996) Mol. Gen. Genet. , vol.253 , pp. 377-386
    • Durnford, D.G.1    Aebersold, R.2    Green, B.R.3
  • 7
    • 0031742926 scopus 로고    scopus 로고
    • The genes encoding light-harvesting subunits of Cyclotella cryptica (Bacillariophyceae) constitute a complex and heterogeneous family
    • Eppard, M. and Rhiel, E. (1998) The genes encoding light-harvesting subunits of Cyclotella cryptica (Bacillariophyceae) constitute a complex and heterogeneous family. Mol. Gen. Genet. 260, 335-345.
    • (1998) Mol. Gen. Genet. , vol.260 , pp. 335-345
    • Eppard, M.1    Rhiel, E.2
  • 8
    • 0001939094 scopus 로고
    • RACE: Rapid amplification of cDNA ends
    • (Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., eds.), New York: Academic Press
    • Frohman, M. A. (1990) RACE: Rapid amplification of cDNA ends. In "PCR Protocols" (Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., eds.), New York: Academic Press, pp. 28-38.
    • (1990) PCR Protocols , pp. 28-38
    • Frohman, M.A.1
  • 9
    • 0026815409 scopus 로고
    • The early genetic response to light in the green alga Chlamydomonas eugametos grown under light/dark cycles involves genes that represent direct responses to light and photosynthesis
    • Gagne, G. and Guertin, M. (1992) The early genetic response to light in the green alga Chlamydomonas eugametos grown under light/dark cycles involves genes that represent direct responses to light and photosynthesis. Plant Mol. Biol. 18, 429-445.
    • (1992) Plant Mol. Biol. , vol.18 , pp. 429-445
    • Gagne, G.1    Guertin, M.2
  • 11
    • 0001414957 scopus 로고
    • Sequence conservation of light-harvesting and stress-response proteins in relation to the three-dimensional molecular structure of LHCII
    • Green, B. R. and Kühlbrandt, W. (1995) Sequence conservation of light-harvesting and stress-response proteins in relation to the three-dimensional molecular structure of LHCII. Photosynth. Res. 44, 139-148.
    • (1995) Photosynth. Res. , vol.44 , pp. 139-148
    • Green, B.R.1    Kühlbrandt, W.2
  • 12
    • 0028002091 scopus 로고
    • Hypothesis for the evolution of three-helix Chl a/b and Chl a/c light-harvesting antenna proteins from two-helix and four-helix ancestors
    • Green, B. R. and Pichersky, E. (1994) Hypothesis for the evolution of three-helix Chl a/b and Chl a/c light-harvesting antenna proteins from two-helix and four-helix ancestors. Photosynth. Res. 39, 149-162.
    • (1994) Photosynth. Res. , vol.39 , pp. 149-162
    • Green, B.R.1    Pichersky, E.2
  • 13
    • 0028920225 scopus 로고
    • The light-harvesting chlorophyll a-c binding protein of dinoflagellates: A putative polyprotein
    • Hiller, R. G., Wrench, P. M., and Sharples, F. P. (1995) The light-harvesting chlorophyll a-c binding protein of dinoflagellates: a putative polyprotein. FEBS Lett. 363, 175-178.
    • (1995) FEBS Lett. , vol.363 , pp. 175-178
    • Hiller, R.G.1    Wrench, P.M.2    Sharples, F.P.3
  • 14
    • 0027222811 scopus 로고
    • Characterization of a cDNA encoding the 20-kDa photosystem I light-harvesting polypeptide of Chlamydomonas reinhardtii
    • Hwang, S. and Herrin, D. (1993) Characterization of a cDNA encoding the 20-kDa photosystem I light-harvesting polypeptide of Chlamydomonas reinhardtii. Curr. Genet. 23, 512-517.
    • (1993) Curr. Genet. , vol.23 , pp. 512-517
    • Hwang, S.1    Herrin, D.2
  • 15
    • 0024293561 scopus 로고
    • Structure of the Chlamydomonas reinhardtii cabll-1 gene encoding a chlorophyll-a/b-binding protein
    • Imbault, P., Wittemer, C., Johanningmeier, U., Jacobs, J. D., and Howell, S. H. (1988) Structure of the Chlamydomonas reinhardtii cabll-1 gene encoding a chlorophyll-a/b-binding protein. Gene 73, 397-407.
    • (1988) Gene , vol.73 , pp. 397-407
    • Imbault, P.1    Wittemer, C.2    Johanningmeier, U.3    Jacobs, J.D.4    Howell, S.H.5
  • 17
    • 0029240212 scopus 로고
    • Nucleotide sequence of two cDNAs encoding fucoxanthin chlorophyll a/c proteins in the diatom Odontella sinensis
    • Kroth-Pancic, P. G. (1995) Nucleotide sequence of two cDNAs encoding fucoxanthin chlorophyll a/c proteins in the diatom Odontella sinensis. Plant Mol. Biol. 27, 825-828.
    • (1995) Plant Mol. Biol. , vol.27 , pp. 825-828
    • Kroth-Pancic, P.G.1
  • 18
    • 0020475449 scopus 로고
    • A simple method for displaying the hydrophobic character of a protein
    • Kyte, J. and Doolittle, R. F. (1982) A simple method for displaying the hydrophobic character of a protein. J. Mol. Biol. 157, 105-132.
    • (1982) J. Mol. Biol. , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 19
    • 0032553297 scopus 로고    scopus 로고
    • Protein transport into "complex" diatom plastids utilizes two different targeting signals
    • Lang, M., Apt, K. E., and Kroth, P. G. (1998) Protein transport into "complex" diatom plastids utilizes two different targeting signals. J. Biol. Chem. 273, 30973-30978.
    • (1998) J. Biol. Chem. , vol.273 , pp. 30973-30978
    • Lang, M.1    Apt, K.E.2    Kroth, P.G.3
  • 20
    • 0028446010 scopus 로고
    • Cloning and nucleotide sequence of a cDNA encoding a major fucoxanthin-chlorophyll a/c-containing protein from the chrysophyte Isochrysis galbana: Implications for evolution of the cab gene family
    • LaRoche, J., Henry, D., Wyman, K., Sukenik, A., and Falkowski, P. (1994) Cloning and nucleotide sequence of a cDNA encoding a major fucoxanthin-chlorophyll a/c-containing protein from the chrysophyte Isochrysis galbana: implications for evolution of the cab gene family. Plant Mol. Biol. 25, 355-368.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 355-368
    • LaRoche, J.1    Henry, D.2    Wyman, K.3    Sukenik, A.4    Falkowski, P.5
  • 21
    • 0001755036 scopus 로고    scopus 로고
    • Phylogenetic relationships of the golden algae (haptophytes, heterokont chromophytes) and their plastids
    • Medlin, L. K., Kooistra, W. H. C. F., Potter, D., Saunders, G. W., and Andersen, R. A. (1997) Phylogenetic relationships of the golden algae (haptophytes, heterokont chromophytes) and their plastids. Pl. Syst. Evol. (Suppl.) 11, 187-219.
    • (1997) Pl. Syst. Evol. (Suppl.) , vol.11 , pp. 187-219
    • Medlin, L.K.1    Kooistra, W.H.C.F.2    Potter, D.3    Saunders, G.W.4    Andersen, R.A.5
  • 22
    • 0014757386 scopus 로고
    • A method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman, S. B. and Wunsch, C. D. (1970) A method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 23
    • 0001305277 scopus 로고
    • Amplification of flanking sequences by inverse PCR
    • (Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., eds.), New York: Academic Press
    • Ochman, H., Medhora, M. M., Garza, D., and Hartl, D. L. (1990) Amplification of flanking sequences by inverse PCR. In "PCR Protocols" (Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J., eds.), New York: Academic Press, pp. 219-227.
    • (1990) PCR Protocols , pp. 219-227
    • Ochman, H.1    Medhora, M.M.2    Garza, D.3    Hartl, D.L.4
  • 24
    • 0029379845 scopus 로고
    • Molecular study of a light-harvesting apoprotein of Giraudyopsis stellifer (Chrysophyceae)
    • Passaquet, C. and Lichtle, C. (1995) Molecular study of a light-harvesting apoprotein of Giraudyopsis stellifer (Chrysophyceae). Plant Mol. Biol. 29, 135-148.
    • (1995) Plant Mol. Biol. , vol.29 , pp. 135-148
    • Passaquet, C.1    Lichtle, C.2
  • 25
    • 0343683401 scopus 로고    scopus 로고
    • The light-harvesting system of the diatom Cyclotella cryptica. Isolation and characterization of the main light-harvesting complex and evidence for the existence of minor pigment proteins
    • Rhiel, E., Marquardt, J., Eppard, M., Mörschel, E., and Krumbein, W. E. (1997) The light-harvesting system of the diatom Cyclotella cryptica. Isolation and characterization of the main light-harvesting complex and evidence for the existence of minor pigment proteins. Bot. Acta 110, 109-117.
    • (1997) Bot. Acta , vol.110 , pp. 109-117
    • Rhiel, E.1    Marquardt, J.2    Eppard, M.3    Mörschel, E.4    Krumbein, W.E.5
  • 26
    • 0030292843 scopus 로고    scopus 로고
    • The Chlamydomonas reinhardtii LI818 gene represents a distant relative of the cabI/II genes that is regulated during the cell cycle and in response to illumination
    • Savard, F., Richard, C., and Guertin, M. (1996) The Chlamydomonas reinhardtii LI818 gene represents a distant relative of the cabI/II genes that is regulated during the cell cycle and in response to illumination. Plant Mol. Biol. 32, 461-473.
    • (1996) Plant Mol. Biol. , vol.32 , pp. 461-473
    • Savard, F.1    Richard, C.2    Guertin, M.3
  • 27
    • 0028036109 scopus 로고
    • SAG-Sammlung von Algenkulturen at the University of Göttingen. Catalogue of strains
    • Schlösser, U. G. (1994) SAG-Sammlung von Algenkulturen at the University of Göttingen. Catalogue of strains. Bot. Acta 107, 113-186.
    • (1994) Bot. Acta , vol.107 , pp. 113-186
    • Schlösser, U.G.1
  • 28
    • 0042310261 scopus 로고    scopus 로고
    • The fucoxanthin chlorophyll a/c proteins comprise a large family of co-expressed genes in the marine diatom Skeletonema costatum (Greve): Characterization of 8 unique cDNAs
    • Smith, J. C., Gao, Y., and Alberte, R. S. (1997) The fucoxanthin chlorophyll a/c proteins comprise a large family of co-expressed genes in the marine diatom Skeletonema costatum (Greve): characterization of 8 unique cDNAs. Plant Physiol. 114, 1136.
    • (1997) Plant Physiol. , vol.114 , pp. 1136
    • Smith, J.C.1    Gao, Y.2    Alberte, R.S.3
  • 29
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer, K. and von Haeseler, A. (1996) Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13, 964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 30
    • 0031040429 scopus 로고    scopus 로고
    • LhcR1 of the red alga Porphyridium cruentum encodes a polypeptide of the LHCI complex with seven potential chlorophyll a-binding residues that are conserved in most LHCs
    • Tan, S., Cunningham, F. X., and Gantt, E. (1997 a) LhcR1 of the red alga Porphyridium cruentum encodes a polypeptide of the LHCI complex with seven potential chlorophyll a-binding residues that are conserved in most LHCs. Plant Mol. Biol. 33, 157-167.
    • (1997) Plant Mol. Biol. , vol.33 , pp. 157-167
    • Tan, S.1    Cunningham, F.X.2    Gantt, E.3
  • 31
    • 0030728539 scopus 로고    scopus 로고
    • Red algal LHCI genes have similarities with both Chl a/b- and a/c-binding proteins: A 21 kDa polypeptide encoded by LhcaR2 is one of the six LHCI polypeptides
    • Tan, S., Ducret, A., Aebersold, R., and Gantt, E. (1997 b) Red algal LHCI genes have similarities with both Chl a/b- and a/c-binding proteins: A 21 kDa polypeptide encoded by LhcaR2 is one of the six LHCI polypeptides. Photosynth. Res. 53, 129-140.
    • (1997) Photosynth. Res. , vol.53 , pp. 129-140
    • Tan, S.1    Ducret, A.2    Aebersold, R.3    Gantt, E.4
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weigthing, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weigthing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4780.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4780
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 0023046815 scopus 로고
    • A new method for predicting signal sequence cleavage sites
    • von Heijne, G. (1986) A new method for predicting signal sequence cleavage sites. Nucleic Acids Res. 14, 4683-4690.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 4683-4690
    • Von Heijne, G.1
  • 35
    • 0024542834 scopus 로고
    • Domain structure of mitochondrial and chloroplast targeting peptides
    • von Heijne, G., Stepphuhn, J. and Herrmann, R. G. (1989) Domain structure of mitochondrial and chloroplast targeting peptides. Eur. J. Biochem. 180, 535-545.
    • (1989) Eur. J. Biochem. , vol.180 , pp. 535-545
    • Von Heijne, G.1    Stepphuhn, J.2    Herrmann, R.G.3
  • 36
    • 0028064845 scopus 로고
    • Maximum-likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang, Z. (1994) Maximum-likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods. J. Mol. Evol. 39, 306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1


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