Colorimetric detection of the tuberculosis complex using cycling probe technology and hybridization in microplates

BioTechniques

Volumn 28, Issue 6, 2000, Pages 1152-1160

  Warnon, Stéphanie ^a   Zammatteo, N ^a   Alexandre, I ^a   Hans, C ^a   Remacle, J ^a  

^a UNIVERSITY OF NAMUR   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHIMERA; COLORIMETRY; DNA PROBE; ELECTROPHORESIS; GENE TARGETING; HYBRIDIZATION; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; STEREOSPECIFICITY;

EID: 0034042810     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/00286st05     Document Type: Article

References (23)

1. Beggs, M., M. Cave, C. Marlowe, L. Cloney, P. Duck and K. Eisenach. 1996. Characterization of mycobacterium tuberculosis complex direct repeat sequence for use in cycling probe reaction. J. Clin. Microbiol. 34:2985-2989.
2. Bekkaoui, F., J. McNevin, C.H. Leung, G. J. Peterson, A. Patel, R.S. Bhatt and R.N. Bryan. 1999. Rapid detection of the mec A gene in methicillin resistant staphylococci using a colorimetric cycling probe technology. Diagn. Microbiol. Infect. Dis. 34:83-90.
3. Berkner, K. and W. Folk. 1977. EcoRI cleavage and methylation of DNAs containing modified pyrimidines in the recognition sequence. J. Biol. Chem. 252:3185-3193.
4. Bernt, C., M. Bebenroth, K. Oehlschlegel, F. Hiepe and W. Schöbler. 1995. Quantitative polymerase chain reaction using a DNA hybridization assay based on surface-activated microplates. Anal. Biochem. 225:252-257.
5. Cass, T. 1998. OLIGO 6. Biotechnology Software & Internet Journal, Mary Ann Liebert, Inc., Larchmont, NY 5:22-23.
6. Chevrier, D., S. Rasmussen and J.-L. Guesdon. 1993. PCR product quantification by non-radioactive hybridization procedures using an oligonucleotide covalently bound to microwells. Mol. Cell. Probes 7:187-197.
7. Cloney, L., C. Marlowe, A. Wong, R. Chow and R. Bryan. 1999. Rapid detection of mecA in methicillin resistant staphylococcus aureus using cycling probe technology. Mol. Cell. Probes 13:191-197.
8. De Beenhouwer, H., Z. Liang, P. de Rijk, C. van Eekeren and F. Portaels. 1995. Detection and identification of mycobacteria by DNA amplification and oligonucleotide-specific capture plate hybridizalion. J. Clin. Microbiol. 33:2994-2998.
9. Duck, P., G. Alvarado-Urbina, B. Burdick and B. Collier. 1990. Probe amplifier system based on chimeric cycling oligonucleotides. BioTechniques 9:142-147.
10. Jaeger, J.A., D.H. Turner and M. Zuker. 1989. Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 86:7706-7710.
11. Kanaya, S. and M. Itaya. 1992. Expression, purification and characterization of a recombinant ribonuclease H from Thermus thermophilus HB8. J. Biol. Chem. 267:10184-10192.
12. Modrusan, Z., F. Bekkaoui and P. Duck. 1998. Spermine-mediated improvement of cycling probe reaction. Mol. Cell. Probes 12:107-116.
13. Modrusan, Z., C. Marlowe, D. Wheeler, M. Pirseyedi and R. Bryan. 1999. Detection of vancomycin resistant genes vanA and vanB by cycling probe technology. Mol. Cell. Probes 13:223-231.
14. Nielsen, D.A., A. Novoradosky and D. Goldman. 1995. SSCP primer design based on single-strand DNA structure predicted by DNA folding program. Nucleic Acids Res. 23:2287-2291.
15. Rasmussen, S.R., M.R. Larsen and S.E. Rasmussen. 1991. Covalent immobilization of DNA onto polystyrene microwells: The molecules are only bound at the 5′ end. Anal. Biochem. 198:138-142.
16. Tenover, F. 1988. Diagnostic deoxyribonucleic acid probes for infectious diseases. Clin. Microbiol. Rev. 1:82-101.
17. Thierry, D., P. Chavarot, G. Marchal, K. Le Thi, M. Ho, N. Nguyen, N. Le, S. Ledru et al. 1995. Mycobacterium tuberculosis strains unidentified using the 1S6110 probe can be detected by oligonucleotides derived from the Mt308 sequence. Res. Microbiol. 146:325-328.
18. Thierry, D., C. Chureau, C. Aznar and J-L. Guesdon. 1992. The detection of Mycobacterium tuberculosis in uncultured clinical specimens using the polymerase chain reaction and a non-radioactive DNA probe. Mol. Cell. Probes 6:181-191.
19. Wang, S. and L. Tay. 1999. Evaluation of three nucleic acid amplification methods for direct detection of Mycobacterium tuberculosis complex in respiratory specimens. J. Clin. Microbiol. 37:1932-1934.
20. Wolcott, M.J. 1992. Advances in nucleic acid-based detection methods. Clin. Microbiol. Rev. 5:370-386.
21. Zammatteo, N., I. Alexandre, I. Ernest, L. Le, F. Brancart and J. Remade. 1997. Comparison between microwell and bead supports for the detection of human cytomegalovirus amplicons by sandwich hybridization. Anal. Biochem. 255:180-189.
22. Zammatteo, N., C. Girardeaux, D. Delforge, J.-J. Pireaux and J. Remacle. 1996. Amination of polystyrene microwells: Application to the covalent grafting of DNA probes for hybridization assays. Anal. Biochem. 256:85-94.
23. Beach, R.C. 1981. The unified graphics system for Fortran 77 programs manual. Stanford, CA.