Genetic requirements of phage λ red-mediated gene replacement in Escherichia coli K-12

Journal of Bacteriology

Volumn 182, Issue 8, 2000, Pages 2336-2340

  Poteete, Anthony R ^a   Fenton, Anita C ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIOPHAGE; CELL VIABILITY; ESCHERICHIA COLI; GENE FREQUENCY; GENE INSERTION; GENE MUTATION; GENETIC ANALYSIS; GENETIC RECOMBINATION; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; STRAIN DIFFERENCE;

BACTERIOPHAGE LAMBDA; DOSE-RESPONSE RELATIONSHIP, RADIATION; ESCHERICHIA COLI; EXODEOXYRIBONUCLEASE V; EXODEOXYRIBONUCLEASES; GENES, BACTERIAL; GENES, VIRAL; GENETIC COMPLEMENTATION TEST; MODELS, GENETIC; RECOMBINATION, GENETIC; ULTRAVIOLET RAYS;

BACTERIA (MICROORGANISMS); BACTERIOPHAGE LAMBDA; ESCHERICHIA; ESCHERICHIA COLI; ESCHERICHIA COLI K12; FELIS CATUS; NEGIBACTERIA; SULA;

EID: 0034034769     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.182.8.2336-2340.2000     Document Type: Article

References (33)

1. Amman, E., J. Brosius, and M. Ptashne. 1983. Vectors bearing a hybrid trp-lac promoter useful for regulated expression of cloned genes in Escherichia coli. Gene 25:167-178.
2. Bachmann, B. J. 1996. Derivations and genotypes of some mutant derivatives of Escherichia coli K-12, p. 2460-2488. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella: cellular and molecular biology, 2nd ed. ASM Press, Washington, D.C.
3. + genes. Proc. Natl. Acad. Sci. USA 65:955-961.
4. Barbour, S. D., H. Nagaishi, A. Templin, and A. J. Clark. 1970. Biochemical and genetic studies of recombinational proficiency in Escherichia coli. II. Rec+ revenants due to indirect suppression of Rec - mutants. Proc. Natl. Acad. Sci. USA 67:128-135.
5. Clark, A. J., V. Sharma, S. Brenowitz, C. C. Chu, S. Sandler, L. Satin, A. Templin, I. Berger, and A. Cohen. 1993. Genetic and molecular analyses of the C-terminal region of the recE gene from the Rac prophage of Escherichia coli K-12 reveal the recT gene. J. Bacteriol. 175:7673-7682.
6. Gillen, J. R., D. K. Willis, and A. J. Clark. 1981. Genetic analysis of the RecE pathway of genetic recombination in Escherichia coli K-12. J. Bacteriol. 145:521-535.
7. Guttesman, S., and M. R. Maurizi. 1992. Regulation by proteolysis: energy-dependent proteases and their targets. Microbiol. Rev. 56:592-621.
8. Hall, S. D., M. F. Kane, and R. D. Kolodner. 1993. Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA. J. Bacteriol. 175:277-287.
9. Harmon, F. G., and S. C. Kowalczykowski. 1998. RecQ helicase, in concert with RecA and SSB proteins, initiates and disrupts DNA recombination. Genes Dev. 12:1134-1144.
10. Hegde, S. P., M. H. Qin, X. H. Li, M. A. L. Atkinson, A. J. Clark, M. Rajagopalan, and M. V. V. S. Madiraju. 1996. Interactions of RecF protein with RecO, RecR, and single-stranded DNA binding proteins reveal roles for the RecF-RecO-RecR complex in DNA repair and recombination. Proc. Natl. Acad. Sci. USA 93:14468-14473.
11. Hollifield, W., E. Kaplan, and H. Huang. 1987. Efficient RecABC-dependent, homologous recombination between coliphage lambda and plasmids requires a phage ninR region gene. Mol. Gen. Genet. 210:248-255.
12. Jasin, M., and P. Schimmel. 1984. Deletions of an essential gene in Escherichia coli by site-specific recombination with linear DNA fragments. J. Bacteriol. 159:783-786.
13. Kowalczykowski, S. C., D. A. Dixon, A. K. Eggleston, S. D. Lauder, and W. M. Rehrauer. 1994. Biochemistry of homologous recombination in Escherichia coli. Microbiol. Rev. 58:401-465.
14. Krueger, J. H., S. J. Elledge, and G. C. Walker. 1983. Isolation and characterization of Tn5 insertion mutations in the lexA gene of Escherichia coli. J. Bacteriol. 153:1368-1378.
15. Lovett, S. T., and A. J. Clark. 1984. Genetic analysis of the recJ gene of Escherichia coli K-12. J. Bacteriol. 157:190-196.
16. Mahdi, A. A., and R. G. Lloyd. 1989. Identification of the recR locus of Escherichia coli K-12 and analysis of its role in recombination and DNA repair. Mol. Gen. Genet. 216:503-510.
17. Muller, B., I. R. Tsaneva, and S. C. West. 1993. Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins. I. Comparison of RuvAB and RuvB-mediated reactions. J. Biol. Chem. 268: 17179-17184.
18. Muller, B., I. R. Tsaneva, and S. C. West. 1993. Branch migration of Holliday junctions promoted by the Escherichia coli RuvA and RuvB proteins. II. Interaction of RuvB with DNA. J. Biol. Chem. 268:17185-17189.
19. Murphy, K. C. 1998. Use of bacteriophage λ recombination functions to promote gene replacement in Escherichia coli. J. Bacteriol. 180:2063-2071.
20. Myers, R. S., and F. W. Stahl. 1994. Chi and the RecBCD enzyme of Escherichia coli. Annu. Rev. Genet. 28:49-70.
21. Nakayama, K., N. Irino, and H. Nakayama. 1988. The recQ gene of Escherichia coli K-12: molecular cloning and isolation of insertion mutants. Mol. Gen. Genet. 200:266-271.
22. Poteete, A. R., and A. C. Fenton. 1993. Efficient double-strand break-stimulated recombination promoted by the general recombination systems of phages λ and P22. Genetics 134:1013-1021.
23. Poteete, A. R., A. C. Fenton, and K. C. Murphy. 1999. Roles of RuvC and RecG in phage λ Red-mediated recombination. J. Bacteriol. 181:5402-5408.
24. Russell, C. B., D. S. Thaler, and F. W. Dahlquist. 1989. Chromosomal transformation of Escherichia coli recD strains with linearized plasmids. J. Bacteriol. 171:2609-2613.
25. Sandler, S. J., and A. J. Clark. 1994. RecOR suppression of recF mutant phenotypes in Escherichia coli K-12. J. Bacteriol. 176:3661-3672.
26. Sawitzke, J. A., and F. W. Stahl. 1994. The phage λ orf gene encodes a trans-acting factor that suppresses Escherichia coli recO, recR, and recF mutations for recombination of λ but not of E. coli. J. Bacteriol. 176:6730-6737.
27. Sharples, G. J., F. E. Benson, G. T. Illing, and R. G. Lloyd. 1990. Molecular and functional analysis of the ruv region of Escherichia coli K-12 reveals three genes involved in DNA repair and recombination. Mol. Gen. Genet. 221:219-226.
28. Sharples, G. J., L. M. Corbett, and I. R. Graham. 1998. λ Rap protein is a structure-specific endonuclease involved in phage recombination. Proc. Natl. Acad. Sci. USA 95:13507-13512.
29. +. J. Bacteriol. 170:3675-3681.
30. Umezu, K., K. Nakayama, and H. Nakayama. 1990. Escherichia coli RecQ protein is a DNA helicase. Proc. Natl. Acad. Sci. USA 87:5363-5367.
31. van Gool, A. J., N. M. Hajibagheri, A. Stasiak, and S. C. West. 1999. Assembly of the Escherichia coli RuvABC resolvasome directs the orientation of Holliday junction resolution. Genes Dev. 13:1861-1870.
32. Volkert, M. R., and M. A. Hartke. 1984. Suppression of Escherichia coli recF mutations by recA-linked srfA mutations. J. Bacteriol. 157:498-506.
33. Webb, B. L., M. M. Cox, and R. B. Inman. 1997. Recombinational DNA repair: the RecF and RecR proteins limit the extension of RecA filaments beyond single-strand DNA gaps. Cell 91:347-356.