A thermodynamic molecular switch in biological systems: Ribonuclease S' fragment complementation reactions

Biophysical Journal

Volumn 78, Issue 1, 2000, Pages 416-429

  Chun, P W ^a  

^a UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RIBONUCLEASE;

ARTICLE; CHEMICAL BINDING; ENZYME KINETICS; MOLECULAR INTERACTION; THERMODYNAMICS;

EID: 0034033142     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76604-5     Document Type: Article

References (36)

1. D.J. Barr J.H. Goodnight J.P. Sall J.T. Helwig SASD GLM 27 and GLM 131, Statistical Analysis 1985 SAS Institute Cary, NC
2. T.H. Benzinger Thermodynamics, chemical reactions, and molecular biology Nature 200 1971 100 103
3. S.K. Burley G.A. Petsko Aromatic-aromatic interaction: a mechanism of protein structure stabilization Science 229 1985 23 38
4. Chase, M. W., Jr., C. A. Davies, J. K. Downey, D. J. Frurip, R. A. McDonald, and A. N. Syverud. 1985. JANAF Thermodynamic Tables, 3rd ed., Vol. 14, Part II. ACS and the American Institute of Physics for the National Bureau of Standards, Washington, D.C.
5. P.W. Chun Approximation of the Planck-Benzinger thermal work function in protein refolding in ribonuclease systems Int. J. Quantum Chem. Quantum Biol. Symp. 15 1988 247 258
6. P.W. Chun Manual for Computer-Aided Analysis of Biochemical Proc. R. Soc. London Ser. Aesses with Florida 1-2-4 1991 University of Florida Gainesville, FL
7. P.W. Chun The Planck-Benzinger thermal work function: definition of temperature-invariant enthalpy in biological systems J. Phys. Chem. 86 1994 6851 6861
8. P.W. Chun New thermodynamic studies on ribonuclease A at low pH J. Biol. Chem. 270 1995 13925 13931
9. P.W. Chun New thermodynamic studies on hydrogen bond energy of liquid water American Chemical Society, Biophysical Chemistry, poster 283, 212th national American Chemistry Society Meeting Orlando, FL 1996
10. P.W. Chun The Planck-Benzinger thermal work function: determination of the thermodynamic stability of chymotrypsinogen A and ribonuclease A in glycerol J. Phys. Chem. 100 1996 7283 7292
11. P.W. Chun Planck-Benzinger thermal work function: thermodynamic approach to site-specific S-protein and S-peptides interactions in the ribonuclease S′ system J. Phys. Chem. B 101 1997 7835 7843
12. P.W. Chun A thermodynamic approach to the unfolding of wild-type R96 and temperature-sensitive mutant R96H (Arg → His), Poster W411 Biophysical Chemistry, 213th national ACS Meeting San Francisco, California 1997
13. P.W. Chun Application of Planck-Benzinger relationships to biology Methods Enzymol. 295 1998 227 268
14. Chun, P. W. 1999. Uncovering the innate thermodynamic quantities in protein unfolding. Int. J. Quantum Chem. Sanibel Symp. (in press).
15. C.H. Collie J.B. Hasted D.M. Ritson The dielectric properties of water and heavy water Proc. R. Soc. London Ser. A. Phys. Soc. 60 1948 145 160
16. P. Connelly L. Ghosaini C.-Q. Hu A. Kitamura J.M. Sturtevant A differential scanning calorimetric study of the thermal unfolding of seven mutant forms of phage T4 lysozyme Biochemistry 30 1991 1887 1891
17. P. Connelly R. Varadarajan J.M. Sturtevant F.M. Richards Thermodynamics of protein-protein interactions in the ribonuclease S system studied by titration calorimetry Biochemistry 29 1990 6108 6114
18. T.L. Cottrell The Strength of Chemical Bonds 1958 Academic Press New York and London 21–70
19. A.M. Crestfield W.H. Stein S. Moore On the aggregation of bovine pancreatic ribonuclease Arch. Biochem. Biophys. Suppl. 1 1962 2117 2122
20. W.F. Giauque The calculation of free energy from spectroscopic data J. Am. Chem. Soc. 52 1930 4808 4815
21. W.F. Giauque The entropy of hydrogen and the third law of thermodynamics, the free energy and dissociation of hydrogen J. Am. Chem. Soc. 52 1930 4816 4831
22. W.F. Giauque R.W. Blue Hydrogen sulfide, the heat capacity and vapor pressure of solid and liquid, the heat of vaporization, a comparison of thermodynamic and spectroscopic values of the entropy J. Am. Chem. Soc. 58 1930 831 837
23. 2 J. Chem. Phys. 6 1938 40 52[[page end]]
24. W.F. Giauque P.F. Meads The heat capacities and entropies of aluminum and copper from 15 to 300 K J. Am. Chem. Soc. 63 1941 1897 1901
25. J.W. Gibbs On the equilibrium of heterogeneous substance Am. J. Sci. 3 series 16 1878 441 458 (via Trans. Conn. Acad. Sci. 3:228–232)
26. R.P. Hearn F.M. Richards J.M. Sturtevant G.D. Watt Thermodynamics of the binding of S-peptide to S-protein to form ribonuclease S′ Biochemistry 30 1971 1887 1891
27. J.P. Johari Determining temperature-invariant enthalpy change and other thermodynamic functions on transformation of proteins and other biopolymers J. Phys. Chem. B 101 1997 6780 6785
28. S. Kitamura J.M. Sturtevant A scanning calorimetric study of the denaturation of the lysozyme phage T4 and Arg → His mutant form thereof Biochemistry 28 1998 3788 3792
29. G.N. Lewis M. Randall K.S. Pitzer L. Brewer Thermodynamics 1961 McGraw-Hill New York 164 182 665–668
30. E.A. Moelwyn-Hughes Physical Chemistry 1957 Pergamon Press New York 90–103, 264–279, 560–563
31. H.A. Naghibi A. Tamura J.M. Sturtevant Significant discrepancies between van’t Hoff and calorimetric enthalpies Proc. R. Soc. London Ser. A. Natl. Acad. Sci. USA 92 1995 5597 5599
32. G. Nemethy H.A. Scheraga Structure of water and hydrophobic bonding in proteins. I. A model for the thermodynamic properties of liquid water J. Chem. Phys. 36 1962 3382 3400
33. M. Planck Treatise on Thermodynamics 7th ed. 1927 A. Ogg, translator. Longmans, Green and Co London 164–182, 665–668
34. W. Rhodes Quantum thermodynamics: the microscopic basis of entropy and linear thermodynamic relations J. Phys. Chem. 95 1991 10246 10252
35. F.D. Rossini D.D. Wagnman Circular of the National Bureau of Standards 500, Related Values of Chemical Thermodynamic Properties 1952 U.S. Government Printing Office Washington, DC.
36. R. Varadarajan P.R. Connelly J.M. Sturtevant F.M. Richards Heat capacity changes for protein-peptide interactions in the ribonuclease S′ system Biochemistry 31 1992 1421 1426