메뉴 건너뛰기




Volumn 17, Issue 5, 2000, Pages 730-737

Evidence that a family of miniature inverted-repeat transposable elements (MITEs) from the Arabidopsis thaliana genome has arisen from a pogo- like DNA transposon

Author keywords

Arabidopsis; DNA transposon; Evolution; Miniature inverted repeat transposable element (MITE); Pogo; Tcl mariner superfamily

Indexed keywords

TRANSPOSASE;

EID: 0034022932     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026351     Document Type: Article
Times cited : (139)

References (47)
  • 2
    • 0027344340 scopus 로고
    • The occurrence of the transposable element pogo in Drosophila melanogaster
    • BOUSSY, I. A., L. CHARLES, M. H. HAMELIN, G. PERIQUET, and D. Y. SHAPIRO. 1993. The occurrence of the transposable element pogo in Drosophila melanogaster. Genetica 88:1-10.
    • (1993) Genetica , vol.88 , pp. 1-10
    • Boussy, I.A.1    Charles, L.2    Hamelin, M.H.3    Periquet, G.4    Shapiro, D.Y.5
  • 3
    • 0033230637 scopus 로고    scopus 로고
    • DEC: A new miniature inverted-repeat transposable element from the genome of the beetle Tenebrio molitor
    • BRAQUART, C., V. ROYER, and H. BOUHIN. 1999. DEC: a new miniature inverted-repeat transposable element from the genome of the beetle Tenebrio molitor. Insect Mol. Biol. 8: 571-574.
    • (1999) Insect Mol. Biol. , vol.8 , pp. 571-574
    • Braquart, C.1    Royer, V.2    Bouhin, H.3
  • 4
    • 0029796901 scopus 로고    scopus 로고
    • DNA sequence insertion and evolutionary variation in gene regulation
    • BRITTEN, R. J. 1996. DNA sequence insertion and evolutionary variation in gene regulation. Proc. Natl. Acad. Sci. USA 93: 9374-9377.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9374-9377
    • Britten, R.J.1
  • 5
    • 0029743043 scopus 로고    scopus 로고
    • A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
    • BUREAU, T. E., P. C. RONALD, and S. R. WESSLER. 1996. A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. Proc. Natl. Acad. Sci. USA 93:8524-8529.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 8524-8529
    • Bureau, T.E.1    Ronald, P.C.2    Wessler, S.R.3
  • 6
    • 0026940433 scopus 로고
    • Tourist: A large family of inverted-repeat element frequently associated with maize genes
    • BUREAU, T. E., and S. R. WESSLER. 1992. Tourist: a large family of inverted-repeat element frequently associated with maize genes. Plant Cell 4:1283-1294.
    • (1992) Plant Cell , vol.4 , pp. 1283-1294
    • Bureau, T.E.1    Wessler, S.R.2
  • 7
    • 0028450046 scopus 로고
    • Stowaway: A new family of inverted-repeat elements associated with genes of both monocotyledonous and dicotyledonous plants
    • _. 1994. Stowaway: a new family of inverted-repeat elements associated with genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6:907-916.
    • (1994) Plant Cell , vol.6 , pp. 907-916
  • 8
    • 0003816813 scopus 로고    scopus 로고
    • Dynamics and evolution of transposable elements
    • Springer-Verlag, Austin, Tex.
    • CAPY, P., C. BAZIN, D. HIGUET, and T. LANGIN, eds. 1998. Dynamics and evolution of transposable elements. P. 24 in Molecular biology intelligence unit, Springer-Verlag, Austin, Tex.
    • (1998) Molecular Biology Intelligence Unit , pp. 24
    • Capy, P.1    Bazin, C.2    Higuet, D.3    Langin, T.4
  • 9
    • 0030005868 scopus 로고    scopus 로고
    • Relationships between transposable elements based upon the integrase-transposase domains: Is there a common ancestor?
    • CAPY, P., R. VITALIS, T. LANGIN, D. HIGUET, and C. BAZIN. 1996. Relationships between transposable elements based upon the integrase-transposase domains: is there a common ancestor? J. Mol. Evol. 42:359-368.
    • (1996) J. Mol. Evol. , vol.42 , pp. 359-368
    • Capy, P.1    Vitalis, R.2    Langin, T.3    Higuet, D.4    Bazin, C.5
  • 10
    • 0032189921 scopus 로고    scopus 로고
    • Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: Characterisation of the Emigrant family of elements
    • CASACUBERTA, E., J. M. CASACUBERTA, P. PUIGDOMENECH, and A. MONFORT. 1998. Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: characterisation of the Emigrant family of elements. Plant J. 16:79-85.
    • (1998) Plant J. , vol.16 , pp. 79-85
    • Casacuberta, E.1    Casacuberta, J.M.2    Puigdomenech, P.3    Monfort, A.4
  • 11
    • 0028321487 scopus 로고
    • The Tc5 family of transposable elements in Caenorhabditis elegans
    • COLLINS, J. J., and P. ANDERSON. 1994. The Tc5 family of transposable elements in Caenorhabditis elegans. Genetics 137:771-781.
    • (1994) Genetics , vol.137 , pp. 771-781
    • Collins, J.J.1    Anderson, P.2
  • 12
    • 0026516965 scopus 로고
    • Fot1, a new family of fungal transposable elements
    • DABOUSSI, M.-J., T. LANGIN, and Y. BRYGOO. 1992. Fot1, a new family of fungal transposable elements. Mol. Gen. Genet. 232:12-16.
    • (1992) Mol. Gen. Genet. , vol.232 , pp. 12-16
    • Daboussi, M.-J.1    Langin, T.2    Brygoo, Y.3
  • 13
    • 0028053230 scopus 로고
    • A proposed superfamily of transposase genes: Transposon-like elements in ciliated protozoa and a common "D35E" motif
    • DOAK, T. G., F. P. DOERDER, C. L. JAHN, and G. HERRICK. 1994. A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif. Proc. Natl. Acad. Sci. USA 91:942-946.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 942-946
    • Doak, T.G.1    Doerder, F.P.2    Jahn, C.L.3    Herrick, G.4
  • 14
    • 0024999332 scopus 로고
    • Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
    • DODD, I. B., and J. B. EGAN. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18:5019-5026.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 5019-5026
    • Dodd, I.B.1    Egan, J.B.2
  • 15
    • 0001850680 scopus 로고
    • Maize transposable elements
    • D. E. BERG and M. M. HOWE, eds. American Society for Microbiology, Washington, D.C.
    • FEODOROFF, N. 1989. Maize transposable elements. Pp. 375-411 in D. E. BERG and M. M. HOWE, eds. Mobile DNA. American Society for Microbiology, Washington, D.C.
    • (1989) Mobile DNA , pp. 375-411
    • Feodoroff, N.1
  • 16
    • 0024505998 scopus 로고
    • Eukaryotic transposable elements and genome evolution
    • FINNEGAN, D. J. 1989. Eukaryotic transposable elements and genome evolution. Trends Genet. 5:103-107.
    • (1989) Trends Genet. , vol.5 , pp. 103-107
    • Finnegan, D.J.1
  • 17
    • 0031468628 scopus 로고    scopus 로고
    • Modern thoughts on an ancyent marinere: Function, evolution, regulation
    • HARTL, D. L., A. R. LOHE, and E. R. LOZOVSKAYA. 1997. Modern thoughts on an ancyent marinere: function, evolution, regulation. Annu. Rev. Genet. 31:337-358.
    • (1997) Annu. Rev. Genet. , vol.31 , pp. 337-358
    • Hartl, D.L.1    Lohe, A.R.2    Lozovskaya, E.R.3
  • 18
    • 0029791403 scopus 로고    scopus 로고
    • Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information
    • HEBSGAARD, S. M., P. G. KORNING, N. TOLSTRUP, J. ENGELBRECHT, P. ROUZE, and S. BRUNAK. 1996. Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information. Nucleic Acids Res. 24: 3439-3452.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3439-3452
    • Hebsgaard, S.M.1    Korning, P.G.2    Tolstrup, N.3    Engelbrecht, J.4    Rouze, P.5    Brunak, S.6
  • 19
    • 0032951187 scopus 로고    scopus 로고
    • Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification
    • IZSVÀK, Z., Z. IVICS, N. SHIMODA, D. MOHN, H. OKAMOTO, and P. B. HACKETT. 1999. Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification. J. Mol. Evol. 48:13-21.
    • (1999) J. Mol. Evol. , vol.48 , pp. 13-21
    • Izsvàk, Z.1    Ivics, Z.2    Shimoda, N.3    Mohn, D.4    Okamoto, H.5    Hackett, P.B.6
  • 20
    • 0031827529 scopus 로고    scopus 로고
    • Characterization of Soymar1, a mariner element in soybean
    • JARVIK, T, and K. G. LARK. 1998. Characterization of Soymar1, a mariner element in soybean. Genetics 149:1569-1574.
    • (1998) Genetics , vol.149 , pp. 1569-1574
    • Jarvik, T.1    Lark, K.G.2
  • 21
    • 0032126403 scopus 로고    scopus 로고
    • Protein-PCNA interaction: A DNA-scanning mechanism?
    • KELMAN, Z., and J. HURWITZ. 1998. Protein-PCNA interaction: a DNA-scanning mechanism? Trends. Biochem. Sci. 23: 236-238.
    • (1998) Trends. Biochem. Sci. , vol.23 , pp. 236-238
    • Kelman, Z.1    Hurwitz, J.2
  • 22
    • 0030860770 scopus 로고    scopus 로고
    • Transposable elements as sources of variation in animals and plants
    • KIDWELL, M. G., and D. LISCH. 1997. Transposable elements as sources of variation in animals and plants. Proc. Natl. Acad. Sci. USA 94:7704-7711.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7704-7711
    • Kidwell, M.G.1    Lisch, D.2
  • 23
    • 0030873317 scopus 로고    scopus 로고
    • Purification and characterization of a CENP-B homologue protein that binds to the centromeric K-type repeat DNA of Schizosaccharomyces pombe
    • LEE, J.-K., J. A. HUBERMAN, and J. HURWITZ. 1997. Purification and characterization of a CENP-B homologue protein that binds to the centromeric K-type repeat DNA of Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. USA 94: 8427-8432.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 8427-8432
    • Lee, J.-K.1    Huberman, J.A.2    Hurwitz, J.3
  • 24
    • 0029168410 scopus 로고
    • Transposable elements: Possible catalysts of organismic evolution
    • MCDONALD, J. F. 1995. Transposable elements: possible catalysts of organismic evolution. Trends. Ecol. Evol. 10:123-126.
    • (1995) Trends. Ecol. Evol. , vol.10 , pp. 123-126
    • McDonald, J.F.1
  • 25
    • 0023984847 scopus 로고
    • Optimal alignments in linear space
    • MYERS, E. W., and W. MILLER. 1988. Optimal alignments in linear space. Comput. Appl. Biosci. 4:11-17.
    • (1988) Comput. Appl. Biosci. , vol.4 , pp. 11-17
    • Myers, E.W.1    Miller, W.2
  • 27
    • 0020806379 scopus 로고
    • Structures of P transposable elements and their sites of insertions in the Drosophila melanogaster genome
    • O'HARE, K., and G. M. RUBIN. 1983. Structures of P transposable elements and their sites of insertions in the Drosophila melanogaster genome. Cell 34:25-35.
    • (1983) Cell , vol.34 , pp. 25-35
    • O'Hare, K.1    Rubin, G.M.2
  • 28
    • 0030627982 scopus 로고    scopus 로고
    • Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis
    • PEDERSEN, A. C., and H. NIELSEN. 1997. Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis. ISMB 5:226-233.
    • (1997) ISMB , vol.5 , pp. 226-233
    • Pedersen, A.C.1    Nielsen, H.2
  • 29
    • 0031010740 scopus 로고    scopus 로고
    • A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons
    • PIETROKOVSKI, S., and S. HENIKOFF. 1997. A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons. Mol. Gen. Genet. 254:689-695.
    • (1997) Mol. Gen. Genet. , vol.254 , pp. 689-695
    • Pietrokovski, S.1    Henikoff, S.2
  • 30
    • 0033179759 scopus 로고    scopus 로고
    • Resident aliens: The Tcl/mariner superfamily of transposable elements
    • PLASTERK, R. H. A., Z. IZSVÁK, and Z. IVICS. 1999. Resident aliens: the Tcl/mariner superfamily of transposable elements. Trends Genet. 15:326-332.
    • (1999) Trends Genet. , vol.15 , pp. 326-332
    • Plasterk, R.H.A.1    Izsvák, Z.2    Ivics, Z.3
  • 31
    • 0029862093 scopus 로고    scopus 로고
    • Members of the pogo superfamily of DNA-mediated transposons in the human genome
    • ROBERTSON, H. M. 1996. Members of the pogo superfamily of DNA-mediated transposons in the human genome. Mol. Gen. Genet. 252:761-766.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 761-766
    • Robertson, H.M.1
  • 32
    • 0026801598 scopus 로고
    • The Tc2 transposon of Caenorhabditis elegans has the structure of a self-regulated element
    • RUVOLO, V., J. E. HILL, and A. LEVITT. 1992. The Tc2 transposon of Caenorhabditis elegans has the structure of a self-regulated element. DNA Cell Biol. 11:111-122.
    • (1992) DNA Cell Biol. , vol.11 , pp. 111-122
    • Ruvolo, V.1    Hill, J.E.2    Levitt, A.3
  • 33
    • 0030479536 scopus 로고    scopus 로고
    • The origin of interspersed repeats in the human genome
    • SMIT, A. F. A. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:743-748.
    • (1996) Curr. Opin. Genet. Dev. , vol.6 , pp. 743-748
    • Smit, A.F.A.1
  • 34
    • 0029991222 scopus 로고    scopus 로고
    • Tiggers and DNA transposon fossils in the human genome
    • SMIT, A. F. A., and A. D. RIGGS. 1996. Tiggers and DNA transposon fossils in the human genome. Proc. Natl. Acad. Sci. USA 93:1443-1448.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 1443-1448
    • Smit, A.F.A.1    Riggs, A.D.2
  • 35
    • 0000779836 scopus 로고
    • The structure of hobo transposable elements and their insertion sites
    • STRECK, R. D., J. E. MACGAFFEY, and S. K. BECKENDORF. 1986. The structure of hobo transposable elements and their insertion sites. EMBO J. 5:3615-3623.
    • (1986) EMBO J. , vol.5 , pp. 3615-3623
    • Streck, R.D.1    Macgaffey, J.E.2    Beckendorf, S.K.3
  • 36
    • 0028147235 scopus 로고
    • Functional domain structure of human centromere protein B
    • SUGIMOTO, K., Y. HAGISHITA, and M. HIMENO. 1994. Functional domain structure of human centromere protein B. J. Biol. Chem. 269:24271-24276.
    • (1994) J. Biol. Chem. , vol.269 , pp. 24271-24276
    • Sugimoto, K.1    Hagishita, Y.2    Himeno, M.3
  • 37
    • 0032996513 scopus 로고    scopus 로고
    • Characterization of repetitive DNA elements in Arabidopsis
    • SURZYCKI, S. A., and W. R. BELKNAP. 1999. Characterization of repetitive DNA elements in Arabidopsis. J. Mol. Evol. 48:684-691.
    • (1999) J. Mol. Evol. , vol.48 , pp. 684-691
    • Surzycki, S.A.1    Belknap, W.R.2
  • 38
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. DESMOND, D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Desmond, D.2    Higgins, D.G.3    Gibson, T.J.4
  • 39
    • 0030845416 scopus 로고    scopus 로고
    • Three novel families of miniature inverted-repeat transposable elements are associated with genes of the yellow fever mosquito, Aedes aegypti
    • TU, Z. 1997. Three novel families of miniature inverted-repeat transposable elements are associated with genes of the yellow fever mosquito, Aedes aegypti. Proc. Natl. Acad. Sci. USA 94:7475-7480.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 7475-7480
    • Tu, Z.1
  • 41
    • 0029026162 scopus 로고
    • A novel group of families of short interspersed repetitive elements (SINEs) in Xenopus: Evidence of a specific target site for DNA-mediated transposition of inverted-repeat SINEs
    • UNSAL, K., and G. T. MORGAN. 1995. A novel group of families of short interspersed repetitive elements (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated transposition of inverted-repeat SINEs. J. Mol. Biol. 248:812-823.
    • (1995) J. Mol. Biol. , vol.248 , pp. 812-823
    • Unsal, K.1    Morgan, G.T.2
  • 42
    • 0028090258 scopus 로고
    • The mechanism of transposition of Tc3 in C. Elegans
    • VAN LUENEN, H. G. A. M., S. D. COLLOMS, and R. H. A. PLASTERK. 1994. The mechanism of transposition of Tc3 in C. elegans. Cell 79:293-301.
    • (1994) Cell , vol.79 , pp. 293-301
    • Van Luenen, H.G.A.M.1    Colloms, S.D.2    Plasterk, R.H.A.3
  • 43
    • 0033555751 scopus 로고    scopus 로고
    • Pogo transposase contains a putative helix-turn-helix DNA binding domain that recognises a 12 bp sequence within the terminal inverted repeats
    • WANG, H., E. HARTSWOOD, and D. J. FINNEGAN. 1999. Pogo transposase contains a putative helix-turn-helix DNA binding domain that recognises a 12 bp sequence within the terminal inverted repeats. Nucleic Acids Res. 27:455-461.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 455-461
    • Wang, H.1    Hartswood, E.2    Finnegan, D.J.3
  • 44
    • 0032168526 scopus 로고    scopus 로고
    • PCNA binding proteins in Drosophila melanogaster: The analysis of a conserved PCNA binding domain
    • WARBRICK, E., W. HEATHERINGTON, D. P. LANE, and D. M. GLOVER. 1998. PCNA binding proteins in Drosophila melanogaster: the analysis of a conserved PCNA binding domain. Nucleic Acids Res. 26:3925-3932.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3925-3932
    • Warbrick, E.1    Heatherington, W.2    Lane, D.P.3    Glover, D.M.4
  • 45
    • 0029583698 scopus 로고
    • LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
    • WESSLER, S. R., T. E. BUREAU, and S. E. WHITE. 1995. LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr. Opin. Genet. Dev. 5:814-821.
    • (1995) Curr. Opin. Genet. Dev. , vol.5 , pp. 814-821
    • Wessler, S.R.1    Bureau, T.E.2    White, S.E.3
  • 46
    • 0028905333 scopus 로고
    • Guest: A 98 bp inverted repeat transposable element in Neurospora crassa
    • YEADON, P. J., and D. E. CATCHESIDE. 1995. Guest: a 98 bp inverted repeat transposable element in Neurospora crassa. Mol. Gen. Genet. 247:105-109.
    • (1995) Mol. Gen. Genet. , vol.247 , pp. 105-109
    • Yeadon, P.J.1    Catcheside, D.E.2
  • 47
    • 0026356176 scopus 로고
    • Tc4, a Caenorhabditis elegans transposable element with an unusual fold-back structure
    • YUAN, J., M. FINNEY, N. TSUNG, and H. R. HORVITZ. 1991. Tc4, a Caenorhabditis elegans transposable element with an unusual fold-back structure. Proc. Natl. Acad. Sci. USA 88: 3334-3338.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 3334-3338
    • Yuan, J.1    Finney, M.2    Tsung, N.3    Horvitz, H.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.