-
1
-
-
0025183708
-
Basic local alignment search tool
-
ALTSCHUL, S. F., W. GISH, W. MILLER, E. W. MYERS, and D. J. LIPMAN. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0027344340
-
The occurrence of the transposable element pogo in Drosophila melanogaster
-
BOUSSY, I. A., L. CHARLES, M. H. HAMELIN, G. PERIQUET, and D. Y. SHAPIRO. 1993. The occurrence of the transposable element pogo in Drosophila melanogaster. Genetica 88:1-10.
-
(1993)
Genetica
, vol.88
, pp. 1-10
-
-
Boussy, I.A.1
Charles, L.2
Hamelin, M.H.3
Periquet, G.4
Shapiro, D.Y.5
-
3
-
-
0033230637
-
DEC: A new miniature inverted-repeat transposable element from the genome of the beetle Tenebrio molitor
-
BRAQUART, C., V. ROYER, and H. BOUHIN. 1999. DEC: a new miniature inverted-repeat transposable element from the genome of the beetle Tenebrio molitor. Insect Mol. Biol. 8: 571-574.
-
(1999)
Insect Mol. Biol.
, vol.8
, pp. 571-574
-
-
Braquart, C.1
Royer, V.2
Bouhin, H.3
-
4
-
-
0029796901
-
DNA sequence insertion and evolutionary variation in gene regulation
-
BRITTEN, R. J. 1996. DNA sequence insertion and evolutionary variation in gene regulation. Proc. Natl. Acad. Sci. USA 93: 9374-9377.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9374-9377
-
-
Britten, R.J.1
-
5
-
-
0029743043
-
A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes
-
BUREAU, T. E., P. C. RONALD, and S. R. WESSLER. 1996. A computer-based systematic survey reveals the predominance of small inverted-repeat elements in wild-type rice genes. Proc. Natl. Acad. Sci. USA 93:8524-8529.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8524-8529
-
-
Bureau, T.E.1
Ronald, P.C.2
Wessler, S.R.3
-
6
-
-
0026940433
-
Tourist: A large family of inverted-repeat element frequently associated with maize genes
-
BUREAU, T. E., and S. R. WESSLER. 1992. Tourist: a large family of inverted-repeat element frequently associated with maize genes. Plant Cell 4:1283-1294.
-
(1992)
Plant Cell
, vol.4
, pp. 1283-1294
-
-
Bureau, T.E.1
Wessler, S.R.2
-
7
-
-
0028450046
-
Stowaway: A new family of inverted-repeat elements associated with genes of both monocotyledonous and dicotyledonous plants
-
_. 1994. Stowaway: a new family of inverted-repeat elements associated with genes of both monocotyledonous and dicotyledonous plants. Plant Cell 6:907-916.
-
(1994)
Plant Cell
, vol.6
, pp. 907-916
-
-
-
8
-
-
0003816813
-
Dynamics and evolution of transposable elements
-
Springer-Verlag, Austin, Tex.
-
CAPY, P., C. BAZIN, D. HIGUET, and T. LANGIN, eds. 1998. Dynamics and evolution of transposable elements. P. 24 in Molecular biology intelligence unit, Springer-Verlag, Austin, Tex.
-
(1998)
Molecular Biology Intelligence Unit
, pp. 24
-
-
Capy, P.1
Bazin, C.2
Higuet, D.3
Langin, T.4
-
9
-
-
0030005868
-
Relationships between transposable elements based upon the integrase-transposase domains: Is there a common ancestor?
-
CAPY, P., R. VITALIS, T. LANGIN, D. HIGUET, and C. BAZIN. 1996. Relationships between transposable elements based upon the integrase-transposase domains: is there a common ancestor? J. Mol. Evol. 42:359-368.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 359-368
-
-
Capy, P.1
Vitalis, R.2
Langin, T.3
Higuet, D.4
Bazin, C.5
-
10
-
-
0032189921
-
Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: Characterisation of the Emigrant family of elements
-
CASACUBERTA, E., J. M. CASACUBERTA, P. PUIGDOMENECH, and A. MONFORT. 1998. Presence of miniature inverted-repeat transposable elements (MITEs) in the genome of Arabidopsis thaliana: characterisation of the Emigrant family of elements. Plant J. 16:79-85.
-
(1998)
Plant J.
, vol.16
, pp. 79-85
-
-
Casacuberta, E.1
Casacuberta, J.M.2
Puigdomenech, P.3
Monfort, A.4
-
11
-
-
0028321487
-
The Tc5 family of transposable elements in Caenorhabditis elegans
-
COLLINS, J. J., and P. ANDERSON. 1994. The Tc5 family of transposable elements in Caenorhabditis elegans. Genetics 137:771-781.
-
(1994)
Genetics
, vol.137
, pp. 771-781
-
-
Collins, J.J.1
Anderson, P.2
-
12
-
-
0026516965
-
Fot1, a new family of fungal transposable elements
-
DABOUSSI, M.-J., T. LANGIN, and Y. BRYGOO. 1992. Fot1, a new family of fungal transposable elements. Mol. Gen. Genet. 232:12-16.
-
(1992)
Mol. Gen. Genet.
, vol.232
, pp. 12-16
-
-
Daboussi, M.-J.1
Langin, T.2
Brygoo, Y.3
-
13
-
-
0028053230
-
A proposed superfamily of transposase genes: Transposon-like elements in ciliated protozoa and a common "D35E" motif
-
DOAK, T. G., F. P. DOERDER, C. L. JAHN, and G. HERRICK. 1994. A proposed superfamily of transposase genes: transposon-like elements in ciliated protozoa and a common "D35E" motif. Proc. Natl. Acad. Sci. USA 91:942-946.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 942-946
-
-
Doak, T.G.1
Doerder, F.P.2
Jahn, C.L.3
Herrick, G.4
-
14
-
-
0024999332
-
Improved detection of helix-turn-helix DNA-binding motifs in protein sequences
-
DODD, I. B., and J. B. EGAN. 1990. Improved detection of helix-turn-helix DNA-binding motifs in protein sequences. Nucleic Acids Res. 18:5019-5026.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5019-5026
-
-
Dodd, I.B.1
Egan, J.B.2
-
15
-
-
0001850680
-
Maize transposable elements
-
D. E. BERG and M. M. HOWE, eds. American Society for Microbiology, Washington, D.C.
-
FEODOROFF, N. 1989. Maize transposable elements. Pp. 375-411 in D. E. BERG and M. M. HOWE, eds. Mobile DNA. American Society for Microbiology, Washington, D.C.
-
(1989)
Mobile DNA
, pp. 375-411
-
-
Feodoroff, N.1
-
16
-
-
0024505998
-
Eukaryotic transposable elements and genome evolution
-
FINNEGAN, D. J. 1989. Eukaryotic transposable elements and genome evolution. Trends Genet. 5:103-107.
-
(1989)
Trends Genet.
, vol.5
, pp. 103-107
-
-
Finnegan, D.J.1
-
17
-
-
0031468628
-
Modern thoughts on an ancyent marinere: Function, evolution, regulation
-
HARTL, D. L., A. R. LOHE, and E. R. LOZOVSKAYA. 1997. Modern thoughts on an ancyent marinere: function, evolution, regulation. Annu. Rev. Genet. 31:337-358.
-
(1997)
Annu. Rev. Genet.
, vol.31
, pp. 337-358
-
-
Hartl, D.L.1
Lohe, A.R.2
Lozovskaya, E.R.3
-
18
-
-
0029791403
-
Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information
-
HEBSGAARD, S. M., P. G. KORNING, N. TOLSTRUP, J. ENGELBRECHT, P. ROUZE, and S. BRUNAK. 1996. Splice site prediction in Arabidopsis thaliana DNA by combining local and global sequence information. Nucleic Acids Res. 24: 3439-3452.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 3439-3452
-
-
Hebsgaard, S.M.1
Korning, P.G.2
Tolstrup, N.3
Engelbrecht, J.4
Rouze, P.5
Brunak, S.6
-
19
-
-
0032951187
-
Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification
-
IZSVÀK, Z., Z. IVICS, N. SHIMODA, D. MOHN, H. OKAMOTO, and P. B. HACKETT. 1999. Short inverted-repeat transposable elements in teleost fish and implications for a mechanism of their amplification. J. Mol. Evol. 48:13-21.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 13-21
-
-
Izsvàk, Z.1
Ivics, Z.2
Shimoda, N.3
Mohn, D.4
Okamoto, H.5
Hackett, P.B.6
-
20
-
-
0031827529
-
Characterization of Soymar1, a mariner element in soybean
-
JARVIK, T, and K. G. LARK. 1998. Characterization of Soymar1, a mariner element in soybean. Genetics 149:1569-1574.
-
(1998)
Genetics
, vol.149
, pp. 1569-1574
-
-
Jarvik, T.1
Lark, K.G.2
-
21
-
-
0032126403
-
Protein-PCNA interaction: A DNA-scanning mechanism?
-
KELMAN, Z., and J. HURWITZ. 1998. Protein-PCNA interaction: a DNA-scanning mechanism? Trends. Biochem. Sci. 23: 236-238.
-
(1998)
Trends. Biochem. Sci.
, vol.23
, pp. 236-238
-
-
Kelman, Z.1
Hurwitz, J.2
-
22
-
-
0030860770
-
Transposable elements as sources of variation in animals and plants
-
KIDWELL, M. G., and D. LISCH. 1997. Transposable elements as sources of variation in animals and plants. Proc. Natl. Acad. Sci. USA 94:7704-7711.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7704-7711
-
-
Kidwell, M.G.1
Lisch, D.2
-
23
-
-
0030873317
-
Purification and characterization of a CENP-B homologue protein that binds to the centromeric K-type repeat DNA of Schizosaccharomyces pombe
-
LEE, J.-K., J. A. HUBERMAN, and J. HURWITZ. 1997. Purification and characterization of a CENP-B homologue protein that binds to the centromeric K-type repeat DNA of Schizosaccharomyces pombe. Proc. Natl. Acad. Sci. USA 94: 8427-8432.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8427-8432
-
-
Lee, J.-K.1
Huberman, J.A.2
Hurwitz, J.3
-
24
-
-
0029168410
-
Transposable elements: Possible catalysts of organismic evolution
-
MCDONALD, J. F. 1995. Transposable elements: possible catalysts of organismic evolution. Trends. Ecol. Evol. 10:123-126.
-
(1995)
Trends. Ecol. Evol.
, vol.10
, pp. 123-126
-
-
McDonald, J.F.1
-
25
-
-
0023984847
-
Optimal alignments in linear space
-
MYERS, E. W., and W. MILLER. 1988. Optimal alignments in linear space. Comput. Appl. Biosci. 4:11-17.
-
(1988)
Comput. Appl. Biosci.
, vol.4
, pp. 11-17
-
-
Myers, E.W.1
Miller, W.2
-
26
-
-
0027564879
-
Organisation of the tomato phenol oxidase gene family
-
NEWMANN, S. M., N. T. EANNETTA, H. YU, J. P. PRINCE, M. C. DE VICENTE, S. D. TANKSLEY, and J. C. STEFFENS. 1993. Organisation of the tomato phenol oxidase gene family. Plant Mol. Biol. 21:1035-1051.
-
(1993)
Plant Mol. Biol.
, vol.21
, pp. 1035-1051
-
-
Newmann, S.M.1
Eannetta, N.T.2
Yu, H.3
Prince, J.P.4
De Vicente, M.C.5
Tanksley, S.D.6
Steffens, J.C.7
-
27
-
-
0020806379
-
Structures of P transposable elements and their sites of insertions in the Drosophila melanogaster genome
-
O'HARE, K., and G. M. RUBIN. 1983. Structures of P transposable elements and their sites of insertions in the Drosophila melanogaster genome. Cell 34:25-35.
-
(1983)
Cell
, vol.34
, pp. 25-35
-
-
O'Hare, K.1
Rubin, G.M.2
-
28
-
-
0030627982
-
Neural network prediction of translation initiation sites in eukaryotes: Perspectives for EST and genome analysis
-
PEDERSEN, A. C., and H. NIELSEN. 1997. Neural network prediction of translation initiation sites in eukaryotes: perspectives for EST and genome analysis. ISMB 5:226-233.
-
(1997)
ISMB
, vol.5
, pp. 226-233
-
-
Pedersen, A.C.1
Nielsen, H.2
-
29
-
-
0031010740
-
A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons
-
PIETROKOVSKI, S., and S. HENIKOFF. 1997. A helix-turn-helix DNA-binding motif predicted for transposases of DNA transposons. Mol. Gen. Genet. 254:689-695.
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 689-695
-
-
Pietrokovski, S.1
Henikoff, S.2
-
30
-
-
0033179759
-
Resident aliens: The Tcl/mariner superfamily of transposable elements
-
PLASTERK, R. H. A., Z. IZSVÁK, and Z. IVICS. 1999. Resident aliens: the Tcl/mariner superfamily of transposable elements. Trends Genet. 15:326-332.
-
(1999)
Trends Genet.
, vol.15
, pp. 326-332
-
-
Plasterk, R.H.A.1
Izsvák, Z.2
Ivics, Z.3
-
31
-
-
0029862093
-
Members of the pogo superfamily of DNA-mediated transposons in the human genome
-
ROBERTSON, H. M. 1996. Members of the pogo superfamily of DNA-mediated transposons in the human genome. Mol. Gen. Genet. 252:761-766.
-
(1996)
Mol. Gen. Genet.
, vol.252
, pp. 761-766
-
-
Robertson, H.M.1
-
32
-
-
0026801598
-
The Tc2 transposon of Caenorhabditis elegans has the structure of a self-regulated element
-
RUVOLO, V., J. E. HILL, and A. LEVITT. 1992. The Tc2 transposon of Caenorhabditis elegans has the structure of a self-regulated element. DNA Cell Biol. 11:111-122.
-
(1992)
DNA Cell Biol.
, vol.11
, pp. 111-122
-
-
Ruvolo, V.1
Hill, J.E.2
Levitt, A.3
-
33
-
-
0030479536
-
The origin of interspersed repeats in the human genome
-
SMIT, A. F. A. 1996. The origin of interspersed repeats in the human genome. Curr. Opin. Genet. Dev. 6:743-748.
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 743-748
-
-
Smit, A.F.A.1
-
34
-
-
0029991222
-
Tiggers and DNA transposon fossils in the human genome
-
SMIT, A. F. A., and A. D. RIGGS. 1996. Tiggers and DNA transposon fossils in the human genome. Proc. Natl. Acad. Sci. USA 93:1443-1448.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 1443-1448
-
-
Smit, A.F.A.1
Riggs, A.D.2
-
35
-
-
0000779836
-
The structure of hobo transposable elements and their insertion sites
-
STRECK, R. D., J. E. MACGAFFEY, and S. K. BECKENDORF. 1986. The structure of hobo transposable elements and their insertion sites. EMBO J. 5:3615-3623.
-
(1986)
EMBO J.
, vol.5
, pp. 3615-3623
-
-
Streck, R.D.1
Macgaffey, J.E.2
Beckendorf, S.K.3
-
36
-
-
0028147235
-
Functional domain structure of human centromere protein B
-
SUGIMOTO, K., Y. HAGISHITA, and M. HIMENO. 1994. Functional domain structure of human centromere protein B. J. Biol. Chem. 269:24271-24276.
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 24271-24276
-
-
Sugimoto, K.1
Hagishita, Y.2
Himeno, M.3
-
37
-
-
0032996513
-
Characterization of repetitive DNA elements in Arabidopsis
-
SURZYCKI, S. A., and W. R. BELKNAP. 1999. Characterization of repetitive DNA elements in Arabidopsis. J. Mol. Evol. 48:684-691.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 684-691
-
-
Surzycki, S.A.1
Belknap, W.R.2
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
THOMPSON, J. D., D. DESMOND, D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Desmond, D.2
Higgins, D.G.3
Gibson, T.J.4
-
39
-
-
0030845416
-
Three novel families of miniature inverted-repeat transposable elements are associated with genes of the yellow fever mosquito, Aedes aegypti
-
TU, Z. 1997. Three novel families of miniature inverted-repeat transposable elements are associated with genes of the yellow fever mosquito, Aedes aegypti. Proc. Natl. Acad. Sci. USA 94:7475-7480.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7475-7480
-
-
Tu, Z.1
-
40
-
-
0026517802
-
The pogo transposable element family of Drosophila melanogaster
-
TUDOR, M., M. LOBOCKA, M. GOODWELL, J. PETTITT, and K. O'HARE. 1992. The pogo transposable element family of Drosophila melanogaster. Mol. Gen. Genet. 232:126-134.
-
(1992)
Mol. Gen. Genet.
, vol.232
, pp. 126-134
-
-
Tudor, M.1
Lobocka, M.2
Goodwell, M.3
Pettitt, J.4
O'Hare, K.5
-
41
-
-
0029026162
-
A novel group of families of short interspersed repetitive elements (SINEs) in Xenopus: Evidence of a specific target site for DNA-mediated transposition of inverted-repeat SINEs
-
UNSAL, K., and G. T. MORGAN. 1995. A novel group of families of short interspersed repetitive elements (SINEs) in Xenopus: evidence of a specific target site for DNA-mediated transposition of inverted-repeat SINEs. J. Mol. Biol. 248:812-823.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 812-823
-
-
Unsal, K.1
Morgan, G.T.2
-
42
-
-
0028090258
-
The mechanism of transposition of Tc3 in C. Elegans
-
VAN LUENEN, H. G. A. M., S. D. COLLOMS, and R. H. A. PLASTERK. 1994. The mechanism of transposition of Tc3 in C. elegans. Cell 79:293-301.
-
(1994)
Cell
, vol.79
, pp. 293-301
-
-
Van Luenen, H.G.A.M.1
Colloms, S.D.2
Plasterk, R.H.A.3
-
43
-
-
0033555751
-
Pogo transposase contains a putative helix-turn-helix DNA binding domain that recognises a 12 bp sequence within the terminal inverted repeats
-
WANG, H., E. HARTSWOOD, and D. J. FINNEGAN. 1999. Pogo transposase contains a putative helix-turn-helix DNA binding domain that recognises a 12 bp sequence within the terminal inverted repeats. Nucleic Acids Res. 27:455-461.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 455-461
-
-
Wang, H.1
Hartswood, E.2
Finnegan, D.J.3
-
44
-
-
0032168526
-
PCNA binding proteins in Drosophila melanogaster: The analysis of a conserved PCNA binding domain
-
WARBRICK, E., W. HEATHERINGTON, D. P. LANE, and D. M. GLOVER. 1998. PCNA binding proteins in Drosophila melanogaster: the analysis of a conserved PCNA binding domain. Nucleic Acids Res. 26:3925-3932.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 3925-3932
-
-
Warbrick, E.1
Heatherington, W.2
Lane, D.P.3
Glover, D.M.4
-
45
-
-
0029583698
-
LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
-
WESSLER, S. R., T. E. BUREAU, and S. E. WHITE. 1995. LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr. Opin. Genet. Dev. 5:814-821.
-
(1995)
Curr. Opin. Genet. Dev.
, vol.5
, pp. 814-821
-
-
Wessler, S.R.1
Bureau, T.E.2
White, S.E.3
-
46
-
-
0028905333
-
Guest: A 98 bp inverted repeat transposable element in Neurospora crassa
-
YEADON, P. J., and D. E. CATCHESIDE. 1995. Guest: a 98 bp inverted repeat transposable element in Neurospora crassa. Mol. Gen. Genet. 247:105-109.
-
(1995)
Mol. Gen. Genet.
, vol.247
, pp. 105-109
-
-
Yeadon, P.J.1
Catcheside, D.E.2
-
47
-
-
0026356176
-
Tc4, a Caenorhabditis elegans transposable element with an unusual fold-back structure
-
YUAN, J., M. FINNEY, N. TSUNG, and H. R. HORVITZ. 1991. Tc4, a Caenorhabditis elegans transposable element with an unusual fold-back structure. Proc. Natl. Acad. Sci. USA 88: 3334-3338.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 3334-3338
-
-
Yuan, J.1
Finney, M.2
Tsung, N.3
Horvitz, H.R.4
|