Monte Carlo simulation of diffusion of adsorbed proteins

Proteins: Structure, Function and Genetics

Volumn 39, Issue 1, 2000, Pages 76-81

  Zhdanov, V P ^a,b   Kasemo, B ^a  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b BORESKOV INSTITUTE OF CATALYSIS   (Russian Federation)

Author keywords

Adsorption; Arrhenius parameters; Conformational changes; Diffusion; Lattice model; Monte Carlo simulations

Indexed keywords

ADSORPTION; ALGORITHM; ARTICLE; CONFORMATIONAL TRANSITION; DIFFUSION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DETERMINATION; SIMULATION; SURFACE PROPERTY; SYSTEM ANALYSIS; TEMPERATURE DEPENDENCE;

ADSORPTION; COMPUTER SIMULATION; DIFFUSION; MODELS, MOLECULAR; MONTE CARLO METHOD; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEINS; TEMPERATURE; THERMODYNAMICS; TIME FACTORS;

ARRHENIUS;

EID: 0034001127     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-0134(20000401)39:1<76::AID-PROT8>3.0.CO;2-U     Document Type: Article

References (22)

1. Ramsden JJ. Kinetics of protein adsorption. In: Malmsten M, editor. Biopolymers at interface. New York: Marcel Dekker, 1998. p 321-361.
2. Zhdanov VP, Kasemo B. Monte Carlo simulations of the kinetics of protein adsorption. Surf Rev Lett 1998;5:615-634.
3. Michaeli I, Absolom DR, van Oss CJ. Diffusion of adsorbed proteins within the plane of adsorption. J Coll Interf Sci 1980;77: 586-587.
4. Burghardt TP, Axelrod D. Total internal reflection/fluorescence photobleaching recovery study of serium albumin adsorption dynamics. Biophys J 1981;33:455-467.
5. Tilton RD, Robertson CR, Gast AP. Lateral diffusion of bovine serium albumin adsorbed at the solid-liquid interface. J Coll Interf Sci 1990;137:192-203.
6. Rabe TE, Tilton RD. Surface diffusion of adsorbed proteins in the vicinity of the substrate glass transition temperature. J Coll Interf Sci 1993;159:243-245.
7. Thompson NL, Pearce KH, Hsieh HV. Total internal-reflection fluorescence microscopy application to substrate-supported planar membranes. Eur Biophys J 1993;22:367-378.
8. Ramsden JJ, Bachmanova GI, Archakov AI. Kinetic evidence for protein clustering at a surface. Phys Rev E 1994;50:5072-5076.
9. Tilton RD. Mobility of biomolecules at interfaces. In: Malmsten M, editor. Biopolymers at interface. New York: Marcel Dekker, 1998. p 363-407.
10. Raut JS, Fichthorn KA. Diffusion mechanism of short-chain alkanes on metal substrates: unique molecular features. J Chem Phys 1998;108:1626-1635.
11. Hjelt T, Herminghaus S, Ala-Nissila T, Ying SC. Dynamics of chainlike molecules on surfaces. Phys Rev E 1998;57:1864-1872.
12. Zhdanov VP. Elementary physicochemical processes on solid surfaces. New York: Plenum; 1991. 314 p.
13. Shakhnovich EI. Protein design: a perspective from simple tractable models. Fold Des 1998;3:R45-R58.
14. Sumithra K, Bacemgaer A. Adsorption of random copolymers: a scaling analysis. J Chem Phys 1999;110:2727-2731; and references therein.
15. Kong CY, Muthukumar M. Monte Carlo study of adsorption of a polyelectrolyte onto charged surfaces. J Chem Phys 1998;109:1522-1529; and references therein.
16. Shakhnovich EI, Gutin AM. Engineering of stable and fast-folding sequences of model proteins. Proc Natl Acad Sci USA 1993;90: 7195-7199.
17. Socci ND, Onuchic JN. Folding kinetics of proteinlike heteropolymers. J Chem Phys 1994;101:1519-1528.
18. Socci ND, Onuchic JN. Kinetic and thermodynamic analysis of proteinlike heteropolymers: Monte Carlo histogram technique. J Chem Phys 1995;103:4732-1528.
19. Zhdanov VP, Kasemo B. Monte Carlo simulation of denaturation of adsorbed proteins. Proteins 1998;30:168-176.
20. Bryngelson JD, Onuchic JN, Socci ND, Wolynes PG. Funnels, pathways, and the energy landscape of protein folding: a synthesis. Proteins 1995;21:167-195.
21. Chakraborty AK, Adriani PM, Glassy relaxation at polymer-solid interfaces. Macromolecules 1992;25:2470-2473.
22. Shaffer JS. Computer simulation of homopolymer and copolymer adsorption dynamics. Macromolecules 1994;27:2987-2995.