Heteroduplex mobility and sequence analyses for assessment of variability of Zucchini yellow mosaic virus

Phytopathology

Volumn 90, Issue 3, 2000, Pages 228-235

  Lin, Shih Shun ^a   Hou, Roger F ^a   Yeh, Shyi Dong ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO TERMINAL SEQUENCE; ASSAY; CLONE; COAT PROTEIN; COMPLEMENTARY DNA; CUCURBIT; DNA FRAGMENT; GENETIC CONSERVATION; GENETIC STRAIN; GENETIC VARIANCE; GENOTYPE; HETERODUPLEX MOBILITY ASSAY; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE HOMOLOGY; TAIWAN; ZUCCHINI YELLOW MOSAIC VIRUS;

EID: 0033997059     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO.2000.90.3.228     Document Type: Article

References (45)

1. Alderz, W. C., Purcifull, D. E., Simone, G. W., and Hiebert, E. 1983. Zucchini yellow mosaic virus: A pathogen of squash and other cucurbits in Florida. Proc. Fla. State Hortic. Soc. 96:72-74.
2. Atreya, C. D., Raccah, B., and Pirone, T. P. 1990. A point mutation in the coat protein abolishes aphid transmissibility of a potyvirus. Virology 178: 161-165.
3. Atreya, P. L., Atreya, C. D., and Pirone, T. P. 1991. Amino acid substitutions in the coat protein result in loss of insect transmissibility of a plant virus. Proc. Natl. Acad. Sci. USA 88:7887-7891.
4. Bateson, M. F., Henderson, J., Chaleeprom, W., Gibbs, A. J., and Dale, J. L. 1994. Papaya ringspot potyvirus: Isolate variability and the origin of PRSV type P (Australia). J. Gen. Virol. 75:3547-3553.
5. Chezzi, C., and Schoub, B. D. 1996. Differentiation between vaccine-related and wild-type polioviruses using a heteroduplex mobility assay. J. Virol. Methods 62:93-102.
6. Da Camara Machado, M. L., Da Camara Machado, A., Hanzer, V., Weiss, H., Regner, F., Steinkellner, H., Mattanovich, D., Plail, R., Knapp, E., Kalthoff, B., and Katinger, H. 1992. Regeneration of transgenic plants of Prunus armeniaca containing the coat protein gene of plum pox virus. Plant Cell Rep. 11:25-29.
7. Davis, R. F. 1986. Partial characterization of zucchini yellow mosaic virus isolated from squash in Turkey. Plant Dis. 70:735-738.
8. Dayhoff, M. O., Barker, W. C., and Hunt, L. T. 1983. Establishing homologies in protein sequences. Methods Enzymol. 91:524-545.
9. Delwart, E. L., Herring, B., Rodrigo, A. G., and Mullins, J. I. 1995. Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay. Manual supplement in: PCR Methods and Applications. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
10. Delwart, E. L., Sheppard, H. W., Walker, B. D., Goudsmit, J., and Mullins, J. I. 1994. Human immunodeficiency virus type I evolution in vivo tracked by DNA heteroduplex mobility assays. J. Virol. 68:6672-6683.
11. Delwart, E. L., Shpaer, E. G., McCutchan, F. E., Louwagie, J., Grez, M., Rubsamen-Waigmann, H., and Mullins, J. I. 1993. Genetic relationships determined by a DNA heteroduplex mobility assay: Analysis of HIV-1 env genes. Science 262:1257-1261.
12. Delwart, E. L., Shpaer, E. G., and Mullins, J. I. 1995. Heteroduplex mobility assays for phylogenetic analysis. Page 154-160 in: PCR Strategies. Academic Press, San Diego, CA.
13. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
14. Fitch, M. M. M., Manshardt, R. M., Gonsalves, D., Slightom, J. L., and Sanford, J. C. 1992. Virus-resistant papaya plants derived from tissues bombarded with the coat protein gene of papaya ringspot virus. Bio/Technology 10:1466-1472.
15. Gal-on, A., Antignus, Y., Rosner, A., and Raccah, B. 1990. Nucleotide sequence of the zucchini yellow mosaic virus capsid-encoding gene and its expression in Escherichia coli. Gene 87:273-277.
16. Gal-on, A., Antignus, Y., Rosner, A., and Raccah. B. 1992. A zucchini yellow mosaic virus coat protein gene mutation restores aphid transmissibility but has no effect on multiplication. J. Gen. Virol. 73:2183-2187.
17. Gonsalves, D. 1998. Control of papaya ringspot virus in papaya: A case study. Annu. Rev. Phytopathol. 36:415-437.
18. Grumet, R., and Fang, G. W. 1990. cDNA cloning and sequence analysis of the 3′-terminal region of zucchini yellow mosaic virus RNA. J. Gen. Virol. 71:1619-1622.
19. Hseu, S. H., Huang, C. H., Chang, C. A., Yang, W. Z., Chang, Y. M., and Hsiao, C. H. 1987. The occurrence of five viruses in six cucurbits in Taiwan. Plant Prot. Bull. 29:233-244.
20. Huang, C. H., Liang, S. C., Deng, T. C., and Hseu, S. H. 1993. Comparison of diagnostic hosts and serological tests for four cucurbit potyviruses. Plant Pathol. Bull. 2:169-176.
21. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
22. Kreis, S., and Whistler, T. 1997. Rapid identification of measles virus strains by the heteroduplex mobility assay. Virus Res. 47:197-203.
23. Lecoq, H., Lisa, V., and Dellavalle, G. 1983. Serological identity of muskmelon yellow stunt and zucchini yellow mosaic viruses. Plant Dis. 67:824-825.
24. Lee, S. C., Wu, M., and Wong, S. M. 1992. Nucleotide sequence of a Singapore isolate of zucchini yellow mosaic virus coat protein gene revealed an altered DAG motif. Virus Genes 7:381-387.
25. Lesemann, D.-E., Makkouk, K. M., Koenig, R., and Samman, E. N. 1983. Natural infection of cucumbers by zucchini yellow mosaic virus in Lebanon. Phytopathol. Z. 108:304-313.
26. Lin, S. S., Hou, R. F., Huang, C. H., and Yeh, S. D. 1998. Characterization of zucchini yellow mosaic virus (ZYMV) isolates collected from Taiwan by host reactions, serology, and RT-PCR. Plant Prot. Bull. 40:163-176.
27. Ling, K., Namba, S., Gonsalves, C., Slightom, J. L., and Gonsalves, D. 1991. Protection against detrimental effects of potyvirus infection in transgenic tobacco plants expressing the papaya ringspot virus coat protein gene. Bio/Technology 9:752-758.
28. Lisa, V., Boccardo, G., D'Agostino, G., Dellavalle, G., and D'Aquilio, M. 1981. Characterization of a potyvirus that causes zucchini yellow mosaic. Phytopathology 71:667-672.
29. Nakajima, M., Hayakawa, T., Nakamura, I., and Suzuki, M. 1993. Protection against cucumber mosaic virus (CMV) strain O and Y and chrysanthemum mild mottle virus in transgenic tobacco plants expressing CMV-O coat protein. J. Gen. Virol. 74:319-322.
30. Namba, S., Ling, K., Gonsalves, C., Slightom, J. L., and Gonsalves, D. 1992. Protection of transgenic plants expressing the coat protein gene of watermelon mosaic virus II or zucchini yellow mosaic virus against six potyviruses. Phytopathology 82:940-946.
31. Nelson, R. S., McCormick, S. M., Delannay, X., Dube, P., Layton, J., Anderson, E. J., Kaniewska, M., Proksch, R. K., Horsch, R. B., Rogers, S. G., Fraley, R. T., and Beachy, R. N. 1988. Virus tolerance, plant growth, and field performance of transgenic tomato plants expressing coat protein from tobacco mosaic virus. Bio/Technology 6:403-409.
32. Powell-Abel, P., Nelson, R. S., De, B., Hoffmann, N., Rogers, S. G., Fraley, R. T., and Beachy, R. N. 1986. Delay of disease development in transgenic plants that express the tobacco mosaic virus coat protein gene. Science 232:738-743.
33. Provvidenti, R., Gonsalves, D., and Humaydan, H. S. 1984. Occurrence of zucchini yellow mosaic virus in cucurbits from Connecticut, New York, Florida, and California. Plant Dis. 68:443-446.
34. Purcifull, D. E., Adlerz, W. C., Simone, G. W., Hiebert, E., and Christie, S. R. 1984. Serological relationships and partial characterization of zucchini yellow mosaic virus isolated from squash in Florida. Plant Dis 68: 230-233.
35. Quemada, H., Sieu, L. C., Siemieniak, D. R., Gonsalves, D., and Slightom, J. L. 1990. Watermelon mosaic virus II and zucchini yellow mosaic virus: Cloning of 3′-terminal regions, nucleotide sequences, and phylogenetic comparisons. J. Gen. Virol. 71:1451-1460.
36. Quemada, H. D., Gonsalves, D., and Slightom, J. L. 1991. Expression of coat protein gene from cucumber mosaic virus strain C in tobacco: Protection against infections by CMV strains transmitted mechanically or by aphids. Phytopathology 81:794-802.
37. Sanders, P. R., Sammons, B., Kaniewski, W., Haley, L., Layton, J., La Vallee, B. J., Delannay, X., and Turner, N. E. 1992. Field resistance of transgenic tomatoes expressing the tobacco mosaic virus or tomato mosaic virus coat protein genes. Phytopathology 82:683-690.
38. Shrizadegan, M., Christie, P., and Seemann, J. R. 1991. An efficient method for isolation of RNA from tissue cultured plant cells. Nucleic Acids Res. 19:6055.
39. Shukla, D. D., and Ward, C. W. 1989. Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv. Virus Res. 36:273-314.
40. Shukla, D. D., Ward, C. W., and Brunt, A. A. 1994. Chapter 5: Coat protein structure and variation. Pages 124-136 in: The Potyviridae. CAB International, Wallingford, U.K.
41. Stark, D. M., and Beachy, R. N. 1989. Protection against potyvirus infection in transgenic plants: evidence for broad spectrum resistance. Bio/Technology 7:1257-1262.
42. Thomson, K. G., Dietzgen, R. G., Gibbs, A. J., Tang, Y. C., Liesack, W., Teakle, D. S., and Stackebrandt, E. 1995. Identification of zucchini yellow mosaic potyvirus by RT-PCR and analysis of sequence variability. J. Virol. Methods 55:83-96.
43. Verwoerd, T. C., Dekker, B. M. M., and Hoekema, A. 1989. A small-scale procedure for the rapid isolation of plant RNAs. Nucleic Acids Res. 17:2362.
44. Wilson, J. J., Polyak, S. J., Day, T. D., and Gretch, D. R. 1995. Characterization of simple and complex Hepatitis C virus quasispecies by heteroduplex gel shift analysis: Correlation with nucleotide sequencing. J. Gen. Virol. 76:1763-1771.
45. Wisler, G. C., Purcifull, D. E., and Hiebert, E. 1995. Characterization of the P1 protein and coding region of the zucchini yellow mosaic virus. J. Gen. Virol. 76:37-45.