An aerotaxis transducer gene from Pseudomonas putida

FEMS Microbiology Letters

Volumn 182, Issue 1, 2000, Pages 177-183

  Nichols, Nancy N ^b   Harwood, Caroline S ^a  

^a UNIVERSITY OF IOWA   (United States)

^b NONE

Author keywords

Aerotaxis; Behavioral response; Energy taxis; PAS domain; Pseudomonas; Transducer

Indexed keywords

BACTERIAL PROTEIN;

ARTICLE; CHEMORECEPTOR; ELECTRON TRANSPORT; ENERGY METABOLISM; ENERGY RECOVERY; GENE MUTATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; TRANSDUCER;

CARRIER PROTEINS; CHEMOTAXIS; CLONING, MOLECULAR; CULTURE MEDIA; ENERGY METABOLISM; ESCHERICHIA COLI PROTEINS; GENES, BACTERIAL; KANAMYCIN RESISTANCE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; PSEUDOMONAS PUTIDA; SIGNAL TRANSDUCTION; SUCCINIC ACID;

ESCHERICHIA COLI; PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 0033988679     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1097(99)00586-8     Document Type: Article

References (33)

1. Bespalov V.A., Zhulin I.B., Taylor B.L. Behavioral responses of Escherichia coli to changes in redox potential. Proc. Natl. Acad. Sci. USA. 93:1996;10084-10089.
2. Shioi J., Tribhuwan R.C., Berg S.T., Taylor B.L. Signal transduction in chemo-taxis to oxygen in Escherichia coli and Salmonella typhimurium. J. Bacteriol. 170:1988;5507-5511.
3. Bibikov S.I., Biran R., Rudd K.E., Parkinson J.S. A signal transducer for aerotaxis in Escherichia coli. J. Bacteriol. 179:1997;4075-4079.
4. Rebbapragada A., Johnson M.S., Harding G.P., Zuccarelli A.J., Fletcher H.M., Zhulin I.B., Taylor B.L. The Aer protein and the serine chemoreceptor Tsr independently sense intracellular energy levels and transduce oxygen, redox, and energy signals for Escherichia coli behavior. Proc. Natl. Acad. Sci. USA. 94:1997;10541-10546.
5. Stock, J.B. and Surette, M.G. (1996) Chemotaxis. In: Escherichia coli and Salmonella. Cellular and Molecular Biology (Neidhardt, F.C., Ed.), pp 1103-1129. American Society for Microbiology, Washington, DC.
6. Harwood C.S., Rivelli M., Ornston L.N. Aromatic acids are chemoattractants for Pseudomonas putida. J. Bacteriol. 160:1984;622-628.
7. Harwood C.S. A methyl-accepting protein is involved in benzoate taxis in Pseudomonas putida. J. Bacteriol. 171:1989;4603-4608.
8. Harwood C.S., Fosnaugh K., Dispensa M. Flagellation of Pseudomonas putida and analysis of its motile behavior. J. Bacteriol. 171:1989;4063-4066.
9. Ditty J.L., Grimm A.C., Harwood C.S. Identification of a chemotaxis gene region from Pseudomonas putida. FEMS Microbiol. Lett. 159:1998;267-273.
10. Grimm A.C., Harwood C.S. NahY, a catabolic plasmid-encoded receptor required for chemotaxis of Pseudomonas putida to the aromatic hydrocarbon naphthalene. J. Bacteriol. 181:1999;3310-3316.
11. Harwood C.S., Nichols N.N., Kim M.-K., Ditty J.L., Parales R.E. Identification of the pcaRKF gene cluster from Pseudomonas putida: Involvement in chemotaxis, biodegradation, and transport of 4-hydroxybenzoate. J. Bacteriol. 176:1994;6479-6488.
12. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. (1995) Current Protocols in Molecular Biology. John Wiley and Sons, New York.
13. Saito H., Miura K.I. Preparation of transforming DNA by phenol treatment. Biochim. Biophys. Acta. 72:1963;619-629.
14. Zhang W., Brooun A., McCandless J., Banda P., Alam M. Signal transduction in the Archaeon Halobacterium salinarium is processed through three subfamilies of 13 soluble and membrane-bound transducer protiens. Proc. Natl. Acad. Sci. USA. 93:1996;4649-4654.
15. Bourret R.B., Borkovich K.A., Simon M.I. Signal transduction pathways involving protein phosphorylation in prokaryotes. Annu. Rev. Biochem. 60:1991;401-441.
16. Drummond M.H., Wootton J.C. Sequence of nifL from Klebsiella pneumonia: mode of action and relationship to two families of regulatory proteins. Mol. Microbiol. 1:1987;37-44.
17. Tal R., Wong H.C., Calhoon R., Gelfand D., Fear A.L., Volman G., Mayer R., Ross P., Amikam D., Weinhous H., Cohen A., Sapir S., Ohana P., Benziman M. Three cdg operons control cellular turnover of cyclic di-GMP in Acetobacter xylinum: Genetic organization and occurrence of conserved domains in isoenzymes. J. Bacteriol. 180:1998;4416-4425.
18. Taylor B.L., Zhulin I.B. PAS domains: Internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63:1999;479-506.
19. Taylor, B.L. (1999) Personal communication.
20. Kuroda A., Kumano T., Taguchi K., Nikata T., Kato J., Ohtake H. Molecular cloning and characterization of a chemotactic transducer gene in Pseudomonas aeruginosa. J. Bacteriol. 177:1995;7019-7025.
21. Kato, J., Ohtake, H. and Kuroda, A. (1998) GenBank accession number AB012767.
22. Piper, K.R., Beck von Bodman, S., Cook, D.M., Hwang, I., Kim, H. and Farrand, S.K. (1998) GenBank accession number AF010180.
23. Allmeier H., Cresnar B., Greck M., Schmitt R. Complete nucleotide sequence of Tn1721: gene organization and a novel gene product with features of a chemotaxis protein. Gene. 111:1992;11-20.
24. Wong L.S., Johnson M.S., Zhulin I.B., Taylor B.L. Role of methylation in aerotaxis in Bacillus subtilis. J. Bacteriol. 177:1995;3985-3991.
25. Brooun A., Bell J., Freitas T., Larsen R.W., Alam M. An archaeal aerotaxis transducer combines subunit I core structures of eukaryotic cytochrome c oxidase and eubacterial methyl-accepting chemotaxis proteins. J. Bacteriol. 180:1998;1642-1646.
26. Fu R., Wall J.D., Voordouw G. DcrA, a c-type heme-containing methyl-accepting protein from Desulfovibrio vulgaris Hildenborough, senses the oxygen concentration or redox potential of the environment. J. Bacteriol. 176:1994;344-350.
27. Ponting C.P., Aravind L. PAS: a multifunctional domain family comes to light. Curr. Biol. 7:1997;R674-R677.
28. Simon, R., Priefer, U. and Pühler, A. (1983) A broad host range mobilization system for in vivo genetic engineering: Transposon mutagenesis in Gram-negative bacteria. Bio/Technology, 784-791.
29. Ornston L.N., Parke D. Properties of an inducible uptake system for β-ketoadipate in Pseudomonas putida. J. Bacteriol. 125:1976;475-488.
30. Alexeyev M.F. Three kanamycin resistance gene cassettes with different polylinkers. BioTechniques. 18:1995;52-56.
31. Kovach M.E., Phillips R.W., Elzer P.H., Roop R.M. II, Peterson K.M. pBBR1MCS: a Broad-host-range cloning vector. BioTechniques. 16:1994;800-802.
32. Keen N.T., Tamaki S., Kobayashi D., Trollinger D. Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria. Gene. 70:1988;191-197.
33. Yanish-Perron C., Vieira J., Messing J. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene. 33:1985;103-119.