메뉴 건너뛰기




Volumn 1463, Issue 1, 2000, Pages 131-141

Conformation and dynamic properties of a saturated hydrocarbon chain confined in a model membrane: A Brownian dynamics simulation

Author keywords

Brownian dynamics simulation; Hydrocarbon chain; Mean field potential; Model membrane

Indexed keywords

HYDROCARBON;

EID: 0033985284     PISSN: 00052736     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0005-2736(99)00188-1     Document Type: Article
Times cited : (12)

References (26)
  • 1
    • 0031438285 scopus 로고    scopus 로고
    • A computer perspective of membranes: Molecular dynamics studies of lipid bilayer systems
    • Tieleman D.P., Marrink S.J., Berendsen H.J.C. A computer perspective of membranes: molecular dynamics studies of lipid bilayer systems. Biochim. Biophys. Acta. 1331:1997;235-270.
    • (1997) Biochim. Biophys. Acta , vol.1331 , pp. 235-270
    • Tieleman, D.P.1    Marrink, S.J.2    Berendsen, H.J.C.3
  • 2
    • 0001501943 scopus 로고
    • Proton spin relaxation dispersion studies of phospholipid membranes
    • Rommel E., Noack F., Meier P., Kothe G. Proton spin relaxation dispersion studies of phospholipid membranes. J. Phys. Chem. 92:1988;2981-2987.
    • (1988) J. Phys. Chem. , vol.92 , pp. 2981-2987
    • Rommel, E.1    Noack, F.2    Meier, P.3    Kothe, G.4
  • 3
    • 0016159215 scopus 로고
    • Chain ordering in liquid crystals II. Structure of bilayer membranes
    • Marcelja S. Chain ordering in liquid crystals II. Structure of bilayer membranes. Biochim. Biophys. Acta. 367:1974;165-176.
    • (1974) Biochim. Biophys. Acta , vol.367 , pp. 165-176
    • Marcelja, S.1
  • 4
    • 36549103824 scopus 로고
    • Brownian dynamics of a lipid chain in a membrane bilayer
    • Pastor R.W., Venable R.M., Karplus M. Brownian dynamics of a lipid chain in a membrane bilayer. J. Chem. Phys. 89:1988;1112-1127.
    • (1988) J. Chem. Phys. , vol.89 , pp. 1112-1127
    • Pastor, R.W.1    Venable, R.M.2    Karplus, M.3
  • 6
    • 0026073608 scopus 로고
    • Mean field stochastic molecular dynamics simulation of a phospholipid in a membrane
    • DeLoof H., Harvey S.C., Segrest J.P., Pastor R.W. Mean field stochastic molecular dynamics simulation of a phospholipid in a membrane. Biochemistry. 30:1991;2099-2113.
    • (1991) Biochemistry , vol.30 , pp. 2099-2113
    • Deloof, H.1    Harvey, S.C.2    Segrest, J.P.3    Pastor, R.W.4
  • 7
    • 0028133027 scopus 로고
    • Mean-field calculations of chain packing and conformational statistics in lipid bilayers: Comparison with experiments and molecular dynamics
    • Fattal D.R., Ben-Shaul A. Mean-field calculations of chain packing and conformational statistics in lipid bilayers: comparison with experiments and molecular dynamics. Biophys. J. 67:1994;983-995.
    • (1994) Biophys. J. , vol.67 , pp. 983-995
    • Fattal, D.R.1    Ben-Shaul, A.2
  • 8
    • 0016283654 scopus 로고
    • The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance
    • Seelig A., Seelig J. The dynamic structure of fatty acyl chains in a phospholipid bilayer measured by deuterium magnetic resonance. Biochemistry. 13:1974;4839-4845.
    • (1974) Biochemistry , vol.13 , pp. 4839-4845
    • Seelig, A.1    Seelig, J.2
  • 9
    • 0016378733 scopus 로고
    • Two pictures of a lipid bilayer. A comparison between deuterium label and spin-label experiments
    • Seelig J., Niederberger W. Two pictures of a lipid bilayer. A comparison between deuterium label and spin-label experiments. Biochemistry. 13:1974;1585-1588.
    • (1974) Biochemistry , vol.13 , pp. 1585-1588
    • Seelig, J.1    Niederberger, W.2
  • 10
    • 0001563901 scopus 로고
    • Molecular dynamics simulation of a smectic liquid crystal with atomic detail
    • Egberts E., Berendsen H.J.C. Molecular dynamics simulation of a smectic liquid crystal with atomic detail. J. Chem. Phys. 89:1988;3718-3732.
    • (1988) J. Chem. Phys. , vol.89 , pp. 3718-3732
    • Egberts, E.1    Berendsen, H.J.C.2
  • 11
    • 0000658538 scopus 로고
    • Langevin modes of macromolecules
    • Lamm G., Szabo A. Langevin modes of macromolecules. J. Chem. Phys. 85:1986;7334-7348.
    • (1986) J. Chem. Phys. , vol.85 , pp. 7334-7348
    • Lamm, G.1    Szabo, A.2
  • 12
    • 0001376129 scopus 로고
    • Effect of double bonds on the dynamics of hydrocarbon chains
    • Rey A., Kolinski A., Skolnick J., Levine Y.K. Effect of double bonds on the dynamics of hydrocarbon chains. J. Chem. Phys. 97:1992;1240-1249.
    • (1992) J. Chem. Phys. , vol.97 , pp. 1240-1249
    • Rey, A.1    Kolinski, A.2    Skolnick, J.3    Levine, Y.K.4
  • 13
    • 49549141675 scopus 로고
    • Molecular dynamics of liquid n-butane near its boiling point
    • Ryckaert J.P., Bellemans A. Molecular dynamics of liquid n-butane near its boiling point. Chem. Phys. Lett. 30:1975;123-125.
    • (1975) Chem. Phys. Lett. , vol.30 , pp. 123-125
    • Ryckaert, J.P.1    Bellemans, A.2
  • 14
    • 0029781537 scopus 로고    scopus 로고
    • Distribution and diffusivity of a hydrophobic probe molecule in the interior of a membrane: Theory and simulation
    • Huertas M.L., Cruz V., López Cascales J.J., Acuña A.U., García de la Torre J. Distribution and diffusivity of a hydrophobic probe molecule in the interior of a membrane: theory and simulation. Biophys. J. 71:1996;1428-1439.
    • (1996) Biophys. J. , vol.71 , pp. 1428-1439
    • Huertas, M.L.1    Cruz, V.2    López Cascales, J.J.3    Acuña, A.U.4    García De La Torre, J.5
  • 15
    • 0030033065 scopus 로고    scopus 로고
    • X-ray structure determination of fully hydrated L-α phase dipalmitoylphosphatidylcholine bilayers
    • Nagle J.F., Zhang R., Tristarn-Nagle S., Sun W.J., Petrache H.I., Suter R.M. X-ray structure determination of fully hydrated L-α phase dipalmitoylphosphatidylcholine bilayers. Biophys. J. 70:1996;1419-1431.
    • (1996) Biophys. J. , vol.70 , pp. 1419-1431
    • Nagle, J.F.1    Zhang, R.2    Tristarn-Nagle, S.3    Sun, W.J.4    Petrache, H.I.5    Suter, R.M.6
  • 16
    • 0026729232 scopus 로고
    • Structure of a fluid dioleylphosphatidylcholine bilayer determined by joint refinement of X-ray and neutron diffraction data III. Complete structure
    • Wiener M.C., White S.H. Structure of a fluid dioleylphosphatidylcholine bilayer determined by joint refinement of X-ray and neutron diffraction data III. Complete structure. Biophys. J. 61:1992;434-447.
    • (1992) Biophys. J. , vol.61 , pp. 434-447
    • Wiener, M.C.1    White, S.H.2
  • 17
    • 33750652614 scopus 로고
    • Brownian dynamics with hydrodynamic interactions
    • Ermak D.L., McCammon J.A. Brownian dynamics with hydrodynamic interactions. J. Chem. Phys. 69:1978;1352-1357.
    • (1978) J. Chem. Phys. , vol.69 , pp. 1352-1357
    • Ermak, D.L.1    McCammon, J.A.2
  • 18
    • 36549098189 scopus 로고
    • A second-order algorithm for the simulation of the Brownian dynamics of macromolecular models
    • Iniesta A., García de la Torre J. A second-order algorithm for the simulation of the Brownian dynamics of macromolecular models. J. Chem. Phys. 92:1990;2015-2019.
    • (1990) J. Chem. Phys. , vol.92 , pp. 2015-2019
    • Iniesta, A.1    García De La Torre, J.2
  • 19
    • 0026632050 scopus 로고
    • Calculating the hydrodynamics properties of DNA through a second-order Brownian dynamics algorithm
    • Chirico G., Langowski J. Calculating the hydrodynamics properties of DNA through a second-order Brownian dynamics algorithm. Macromolecules. 25:1992;769-775.
    • (1992) Macromolecules , vol.25 , pp. 769-775
    • Chirico, G.1    Langowski, J.2
  • 20
    • 84990485097 scopus 로고
    • Transport properties of rigid and flexible macromolecules by Brownian dynamics simulation
    • Allison S., McCammon J. Transport properties of rigid and flexible macromolecules by Brownian dynamics simulation. Biopolymers. 23:1984;167-187.
    • (1984) Biopolymers , vol.23 , pp. 167-187
    • Allison, S.1    McCammon, J.2
  • 21
    • 84933517499 scopus 로고
    • Variational treatment of hydrodynamic interaction in polymers
    • Rotne J., Prager S. Variational treatment of hydrodynamic interaction in polymers. J. Chem. Phys. 50:1969;4831-4837.
    • (1969) J. Chem. Phys. , vol.50 , pp. 4831-4837
    • Rotne, J.1    Prager, S.2
  • 22
    • 36849101815 scopus 로고
    • Transport properties of polymer chains in dilute solution: Hydrodynamic interaction
    • Yamakawa H. Transport properties of polymer chains in dilute solution: Hydrodynamic interaction. J. Chem. Phys. 53:1970;436-443.
    • (1970) J. Chem. Phys. , vol.53 , pp. 436-443
    • Yamakawa, H.1
  • 23
    • 36749107621 scopus 로고
    • An eigenfunction expansion method for the analysis of exponential decay curves
    • Provencher S. An eigenfunction expansion method for the analysis of exponential decay curves. J. Chem. Phys. 64:1976;2272.
    • (1976) J. Chem. Phys. , vol.64 , pp. 2272
    • Provencher, S.1
  • 24
    • 0017275569 scopus 로고
    • A Fourier method for the analysis of exponential decay curves
    • Provencher S. A Fourier method for the analysis of exponential decay curves. Biophys. J. 16:1976;151-170.
    • (1976) Biophys. J. , vol.16 , pp. 151-170
    • Provencher, S.1
  • 25
    • 0030002752 scopus 로고    scopus 로고
    • Lateral diffusion of small compounds in human stratum corneum and model lipid bilayer systems
    • Johnson M.E., Berk D.A., Blankschtein D., Golan D.E., Jain R.K., Langer R.S. Lateral diffusion of small compounds in human stratum corneum and model lipid bilayer systems. Biophys. J. 71:1996;2656-2668.
    • (1996) Biophys. J. , vol.71 , pp. 2656-2668
    • Johnson, M.E.1    Berk, D.A.2    Blankschtein, D.3    Golan, D.E.4    Jain, R.K.5    Langer, R.S.6
  • 26
    • 0039587949 scopus 로고    scopus 로고
    • Single-molecule microscopy on model membranes reveals anomalous diffusion
    • Schutz G.J., Schindler H., Schmidt T. Single-molecule microscopy on model membranes reveals anomalous diffusion. Biophys. J. 73:1997;1073-1080.
    • (1997) Biophys. J. , vol.73 , pp. 1073-1080
    • Schutz, G.J.1    Schindler, H.2    Schmidt, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.