메뉴 건너뛰기




Volumn 243, Issue 1-2, 2000, Pages 47-57

Crossover hot-spot instigator (Chi) sequences in Escherichia coli occupy distinct recombination/transcription islands

Author keywords

Base composition; Chargaff differences; Chi sequences; Deinococcus radiodurans; Recombination transcription islands; Szybalski's transcription direction rule; Thermophilic bacteria

Indexed keywords

ARTICLE; BACTERIAL GENE; CROSSING OVER; DNA RECOMBINATION; DNA STRAND BREAKAGE; ESCHERICHIA COLI; GENE SEQUENCE; GENETIC TRANSCRIPTION; HAEMOPHILUS INFLUENZAE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; THERMOPHILIC BACTERIUM;

EID: 0033983656     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00564-8     Document Type: Article
Times cited : (13)

References (26)
  • 1
    • 0032544662 scopus 로고    scopus 로고
    • SSB protein controls RecBCD enzyme nuclease activity during unwinding: A new role for looped intermediates
    • Anderson D.G., Kowalczykowski S.C. SSB protein controls RecBCD enzyme nuclease activity during unwinding: a new role for looped intermediates. J. Mol. Biol. 282:1998;275-285.
    • (1998) J. Mol. Biol. , vol.282 , pp. 275-285
    • Anderson, D.G.1    Kowalczykowski, S.C.2
  • 2
    • 0033531457 scopus 로고    scopus 로고
    • Accounting units in DNA
    • Bell S.J., Forsdyke D.R. Accounting units in DNA. J. Theor. Biol. 197:(1):1999;51-61.
    • (1999) J. Theor. Biol. , vol.197 , Issue.1 , pp. 51-61
    • Bell, S.J.1    Forsdyke, D.R.2
  • 3
    • 0033531431 scopus 로고    scopus 로고
    • Deviations from Chargaff's second parity rule correlate with direction of transcription
    • Bell S.J., Forsdyke D.R. Deviations from Chargaff's second parity rule correlate with direction of transcription. J. Theor. Biol. 197:1999;63-76.
    • (1999) J. Theor. Biol. , vol.197 , pp. 63-76
    • Bell, S.J.1    Forsdyke, D.R.2
  • 4
    • 0032584913 scopus 로고    scopus 로고
    • Correlation of Chi orientation with transcription indicates a fundamental relationship between recombination and transcription
    • Bell S.J., Chow Y.C., Ho J.Y.K., Forsdyke D.R. Correlation of Chi orientation with transcription indicates a fundamental relationship between recombination and transcription. Gene. 216:1998;285-292.
    • (1998) Gene , vol.216 , pp. 285-292
    • Bell, S.J.1    Chow, Y.C.2    Ho, J.Y.K.3    Forsdyke, D.R.4
  • 5
    • 0031854009 scopus 로고    scopus 로고
    • Codon usage can explain GT-rich islands surrounding Chi sites on the Escherichia coli genome
    • Biaudet V., El Karoui M., Gruss A. Codon usage can explain GT-rich islands surrounding Chi sites on the Escherichia coli genome. Mol. Microbiol. 29:1998;661-669.
    • (1998) Mol. Microbiol. , vol.29 , pp. 661-669
    • Biaudet, V.1    El Karoui, M.2    Gruss, A.3
  • 6
    • 0027210404 scopus 로고
    • DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: Organizational symmetry around the origin of replication
    • Burland V., Plunkett G., Daniels D.L., Blattner F.R. DNA sequence and analysis of 136 kilobases of the Escherichia coli genome: organizational symmetry around the origin of replication. Genomics. 16:1993;551-561.
    • (1993) Genomics , vol.16 , pp. 551-561
    • Burland, V.1    Plunkett, G.2    Daniels, D.L.3    Blattner, F.R.4
  • 7
    • 0031713244 scopus 로고    scopus 로고
    • A five-nucleotide sequence protects DNA from exonucleolytic degradation by AddAB, the RecBCD analogue of Bacillus subtilis
    • Chedin F., Noirot P., Biaudet V., Ehrlich S.D. A five-nucleotide sequence protects DNA from exonucleolytic degradation by AddAB, the RecBCD analogue of Bacillus subtilis. Mol. Microbiol. 29:1998;1369-1377.
    • (1998) Mol. Microbiol. , vol.29 , pp. 1369-1377
    • Chedin, F.1    Noirot, P.2    Biaudet, V.3    Ehrlich, S.D.4
  • 8
    • 0031791115 scopus 로고    scopus 로고
    • Genomics, Chi sites and codons: 'Islands of preferred DNA pairing' are oceans of ORFs
    • Colbert T., Taylor A.F., Smith G.R. Genomics, Chi sites and codons: 'islands of preferred DNA pairing' are oceans of ORFs. Trends Genet. 14:1998;485-488.
    • (1998) Trends Genet. , vol.14 , pp. 485-488
    • Colbert, T.1    Taylor, A.F.2    Smith, G.R.3
  • 9
    • 0027096279 scopus 로고
    • Chi sequence protects against RecBCD degradation of DNA in vivo
    • 073-12 077
    • Dabert P., Ehrlich S.D., Gruss A. Chi sequence protects against RecBCD degradation of DNA in vivo. Proc. Natl. Acad. Sci. USA. 89:1992;12 073-12 077.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 12
    • Dabert, P.1    Ehrlich, S.D.2    Gruss, A.3
  • 10
    • 0032450341 scopus 로고    scopus 로고
    • Chargaff difference analysis of the bithorax complex of Drosophila melanogaster
    • Dang K.D., Dutt P.B., Forsdyke D.R. Chargaff difference analysis of the bithorax complex of Drosophila melanogaster. Biochem. Cell Biol. 76:1998;129-137.
    • (1998) Biochem. Cell Biol. , vol.76 , pp. 129-137
    • Dang, K.D.1    Dutt, P.B.2    Forsdyke, D.R.3
  • 11
    • 0025902330 scopus 로고
    • Homologous pairing in vitro stimulated by the recombination hotspot Chi
    • Dixon D.A., Kowalczykowski S.C. Homologous pairing in vitro stimulated by the recombination hotspot Chi. Cell. 66:1991;361-371.
    • (1991) Cell , vol.66 , pp. 361-371
    • Dixon, D.A.1    Kowalczykowski, S.C.2
  • 13
    • 0029918528 scopus 로고    scopus 로고
    • Different biological species "broadcast" their DNAs at different (C+G)% "wavelengths"
    • Forsdyke D.R. Different biological species "broadcast" their DNAs at different (C+G)% "wavelengths" J. Theor. Biol. 178:1996;405-417.
    • (1996) J. Theor. Biol. , vol.178 , pp. 405-417
    • Forsdyke, D.R.1
  • 14
    • 0033555531 scopus 로고    scopus 로고
    • Human Rad51 can form homologous joints in the absence of net strand exchange
    • Gupta R.C., Folta-Stogniew E., Radding C.M. Human Rad51 can form homologous joints in the absence of net strand exchange. J. Biol. Chem. 274:1999;1248-1256.
    • (1999) J. Biol. Chem. , vol.274 , pp. 1248-1256
    • Gupta, R.C.1    Folta-Stogniew, E.2    Radding, C.M.3
  • 15
    • 0021979069 scopus 로고
    • Hypervariable 'minisatellite' regions in human DNA
    • Jeffreys A.J., Wilson V., Thein S.L. Hypervariable 'minisatellite' regions in human DNA. Nature. 314:1985;67-73.
    • (1985) Nature , vol.314 , pp. 67-73
    • Jeffreys, A.J.1    Wilson, V.2    Thein, S.L.3
  • 16
    • 0027821288 scopus 로고
    • Potential advantages of unstable interactions for pairing of chromosomes in meiotic, somatic and premeiotic cells
    • Kleckner N., Weiner B.M. Potential advantages of unstable interactions for pairing of chromosomes in meiotic, somatic and premeiotic cells. Cold Spring Harbor Sym. Quant. Biol. 58:1993;553-565.
    • (1993) Cold Spring Harbor Sym. Quant. Biol. , vol.58 , pp. 553-565
    • Kleckner, N.1    Weiner, B.M.2
  • 17
    • 0028176499 scopus 로고
    • Chi sites in combination with RecA protein increase the survival of linear DNA in Escherichia coli by inactivating exoV activity of RecBCD nuclease
    • Kuzminov A., Schabtach E., Stahl F.W. Chi sites in combination with RecA protein increase the survival of linear DNA in Escherichia coli by inactivating exoV activity of RecBCD nuclease. EMBO J. 13:1994;2764-2776.
    • (1994) EMBO J. , vol.13 , pp. 2764-2776
    • Kuzminov, A.1    Schabtach, E.2    Stahl, F.W.3
  • 18
    • 0034006790 scopus 로고    scopus 로고
    • Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine
    • in press
    • Lao, P.J., Forsdyke, D.R., 2000. Thermophilic bacteria strictly obey Szybalski's transcription direction rule and politely purine-load RNAs with both adenine and guanine. Genome Res., in press.
    • (2000) Genome Res.
    • Lao, P.J.1    Forsdyke, D.R.2
  • 19
    • 0032514675 scopus 로고    scopus 로고
    • RecA binding to a single double-stranded DNA molecule: A possible role of DNA conformational fluctuations
    • Leger J.F., Robert J., Bourdieu L., Chatenay D., Marko J.F. RecA binding to a single double-stranded DNA molecule: a possible role of DNA conformational fluctuations. Proc. Natl. Acad. Sci. USA. 95:1998;12295-12299.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 12295-12299
    • Leger, J.F.1    Robert, J.2    Bourdieu, L.3    Chatenay, D.4    Marko, J.F.5
  • 20
    • 0026513216 scopus 로고
    • Chromosomal context dependence of a eukaryotic recombinational hotspot
    • Ponticelli A.S., Smith G.R. Chromosomal context dependence of a eukaryotic recombinational hotspot. Proc. Natl. Acad. Sci. USA. 89:1992;227-231.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 227-231
    • Ponticelli, A.S.1    Smith, G.R.2
  • 21
    • 0024469392 scopus 로고
    • The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants
    • Rayssiguier C., Thaler D., Radman M. The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature. 342:1989;396-401.
    • (1989) Nature , vol.342 , pp. 396-401
    • Rayssiguier, C.1    Thaler, D.2    Radman, M.3
  • 22
    • 0342642230 scopus 로고    scopus 로고
    • Chi sites and their consequences
    • F.J. de Bruijn, J.R. Lipski, & G.M. Weinstock. New York: Thompson
    • Smith G.R. Chi sites and their consequences. de Bruijn F.J., Lipski J.R., Weinstock G.M. Bacterial Genomics. 1997;49-66 Thompson, New York.
    • (1997) Bacterial Genomics , pp. 49-66
    • Smith, G.R.1
  • 23
    • 0031782376 scopus 로고    scopus 로고
    • Identification of the Chi site of Haemophilus influenzae as several sequences related to the Escherichia coli Chi site
    • Sourice S., Biaudet V., El Karoui M., Ehrlich S.D., Gruss A. Identification of the Chi site of Haemophilus influenzae as several sequences related to the Escherichia coli Chi site. Mol. Microbiol. 27:1998;1021-1029.
    • (1998) Mol. Microbiol. , vol.27 , pp. 1021-1029
    • Sourice, S.1    Biaudet, V.2    El Karoui, M.3    Ehrlich, S.D.4    Gruss, A.5
  • 24
    • 0031455416 scopus 로고    scopus 로고
    • The preference for GT-rich DNA by the yeast Rad51 protein defines a set of universal pairing sequences
    • Tracy R.B., Baumohl J.K., Kowalczykowski S.C. The preference for GT-rich DNA by the yeast Rad51 protein defines a set of universal pairing sequences. Genes Dev. 11:1997;3423-3431.
    • (1997) Genes Dev. , vol.11 , pp. 3423-3431
    • Tracy, R.B.1    Baumohl, J.K.2    Kowalczykowski, S.C.3
  • 25
    • 0031586127 scopus 로고    scopus 로고
    • The recombination hot spot Chi is embedded within islands of preferred DNA pairing sequences in the E. coli genome
    • Tracy R.B., Chedin F., Kowalczykowski S.C. The recombination hot spot Chi is embedded within islands of preferred DNA pairing sequences in the E. coli genome. Cell. 90:1997;205-205.
    • (1997) Cell , vol.90 , pp. 205-205
    • Tracy, R.B.1    Chedin, F.2    Kowalczykowski, S.C.3
  • 26
    • 0033582947 scopus 로고    scopus 로고
    • The simultaneous binding of two double-stranded DNA molecules by Escherichia coli RecA protein
    • Zaitsev E.N., Kowalczykowski S.C. The simultaneous binding of two double-stranded DNA molecules by Escherichia coli RecA protein. J. Mol. Biol. 287:1999;21-31.
    • (1999) J. Mol. Biol. , vol.287 , pp. 21-31
    • Zaitsev, E.N.1    Kowalczykowski, S.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.