Ancient allelism at the cytosolic chaperonin-α-encoding gene of the zebrafish

Genetics

Volumn 154, Issue 1, 2000, Pages 311-322

  Takami, Kimitaka ^a   Figueroa, Felipe ^a   Mayer, Werner E ^a   Klein, Jan ^a  

^a MAX PLANCK INST FÜR BIOLOGIE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CHAPERONIN; NUCLEOTIDE;

ALLELISM; AMINO ACID SUBSTITUTION; ARTICLE; CODON; CYTOSOL; DNA LIBRARY; GENE EXPRESSION; GENE LOCUS; GENE SEQUENCE; GENETIC POLYMORPHISM; GEOGRAPHY; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; ZEBRA FISH;

DANIO RERIO; MUS MUSCULUS; MYA;

EID: 0033977174     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (44)

1. AHMAN, S., and R. S. GUPTA, 1990 Cloning of a Chinese hamster protein homologous to the mouse t-complex protein TCP-1: structural similarity to the ubiquitous 'chaperonin' family of heat-shock proteins. Biochim. Biophys. Acta 1087: 253-255.
2. AHNERT, V., C. MAY, R. GERKE and H. KINDL, 1996 Cucumber T-complex protein. Molecular cloning, bacterial expression and characterization within a 22-S cytosolic complex in cotyledons and hypocotyls. Eur. J. Biochem. 235: 114-119.
3. BARMAN, R. P., 1991 A taxonomic revision of the Indo-Burmese species of Danio Hamilton Buchanan (Pisces: Cyprinidae). Rec. Zool. Surv. India 137: 1-91.
4. BINGULAC-POPOVIC, J., F. FIGUEROA, A. SATO, W. S. TALBOT, S. L. JOHNSON et al., 1997 Mapping of Mhc class I and class II regions to different linkage groups in the zebrafish, Danio rerio. Immunogenetics 46: 129-134.
5. CHENG, M. Y., F. U. HARTI., J. MARTIN, R. A. POLLOCK, F. KALOUSEK et al., 1989 Mitochondrial heat-shock protein hsp60 is essential for assembly of proteins imported into yeast mitochondria. Nature 337: 620-625.
6. ELLIS, R. J., and S. M. VAN DER VIES, 1991 Molecular chaperones. Annu. Rev. Biochem. 60: 321-347.
7. FRYDMAN, J., and F. U. HARTL, 1996 Principles of chaperone-assisted protein folding: differences between in vitro and in vivo mechanisms. Science 272: 1497-1502.
8. GEORGOPOULUS, C. P., R. W. HENDRIX, S. R. CASJENS and A. D. KAISER, 1973 Host participation in bacteriophage lambda head assembly. J. Mol. Biol. 76: 45-60.
9. GONGORA, R., Z. ZALESKA-RUTCZYNSKA, K. TAKAMI, F. FIGUEROA and J. KLEIN, 1998 Linkage of RXRB-like genes to class I and not class II Mhc genes in the zebrafish. Immunogenetics 48: 141-143.
10. GREENHALGH, P., and L. A. STEINER, 1995 Recombination activating gene I (Rag 1) in zebrafish and shark. Immunogenetics 41: 54-55.
11. HEMMINGSEN, S. M., C. WOOLFORD, S. M. VAN DER VIES, K. TILLY, D. T. DENNIS et al., 1988 Homologous plant and bacterial proteins chaperone oligomeric protein assembly. Nature 333: 330-334.
12. KIM, S., K. R. WILLISON and A. L. HORWICH, 1991 Cystosolic chaperonin subunits have a conserved ATPase domain but diverged polypeptide-binding domains. Trends Biochem. Sci. 19: 543-548.
13. KIMURA, M., 1980 A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
14. KIRCHHOFF, C., and K. R. WILLISON, 1990 Nucleotide and amino acid sequence of human testis-derived TCPI. Nucleic Acids Res. 18: 4247.
15. KLEIN, J., and A. SATO, 1998 Birth of the major histocompatibility complex. Scand. J. Immunol. 47: 199-209.
16. KUBOTA, H., G. HYNES, A. CARNE, A. ASHWORTH and K. WILLISON, 1994 Identification of six Tcp-1 related genes encoding divergent subunits of the Tcp-1 containing chaperonin. Curr. Biol. 4: 89-99.
17. KUBOTA, H., G. HYNES and K. WILLISON, 1995 The chaperonin containing t-complex polypeptide I (TCP-1). Eur. J. Biochem. 230: 3-16.
18. KUMAR, S., K. TAMURA and M. NEI, 1993 MEGA: Molecular Evolutionary Genetic Analysis Version 1.0. The Pennsylvania State University, University Park, PA.
19. LEROUX, M. R., and E. P. CANDIDO, 1995a Characterization of four new tcp-1-related ccl genes from the nematode Caenorhabditis elegans. DNA Cell Biol. 14: 951-960.
20. LEROUX, M. R., and E. P. CANDIDO, 1995b Molecular analysis of Caenorhabditis elegans tcp-1, a gene encoding a chaperonin protein. Gene 156: 241-246.
21. LI, W.-H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
22. MORI, M., K. MURATA, H. KUBOTA, A. YAMAMOTO, A. MATSUSHIRO et al., 1992 Cloning of a cDNA encoding Tcp-1 (t-complex polypeptide 1) homologue of Arabidosis thaliana. Gene 122: 381-382.
23. MORITA, T., H. KUBOTA, G. GACHELIN, M. NOZAKI and A. MATSUSHIRO, 1991 Cloning of cDNA encoding rat TCP-1. Biochim. Biophys. Acta 1129: 96-99.
24. MOKITA, T., H. KUBOTA, K. MURATA, M. NOZAKI, C. DELARBRE et al., 1992 Evolution of the mouse thaplotypes: recent and worldwide introgression to Mus musculus. Proc. Natl. Acad. Sci. USA 89: 6851-6855.
25. 2-microblobulin gene in the zebrafish. Immunogenetics 38: 1-10.
26. ORULA, M., H. IWAHANA, H. KANAZAWA, K. HAYASHI and T. SEKIYA, 1989 Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc. Natl. Acad. Sci. USA 86: 2766-2770.
27. ROBINSON, J., E. A. SMITH and J. E. DOWLING, 1995 Temporal and spatial pattern of opsin gene expression in zebrafish (Danio rerio). Vis. Neurosci. 12: 895-906.
28. SATTOU, N., and M. NEI, 1987 The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
29. SANGER, F., S. NICKLEN and A. R. COULSON, 1977 DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
30. SATO, A., F. FIGUEROA, C. O'HUIGIN, D. N. REZNICK and J. KLEIN, 1995 Identification of major histocompatibility complex genes in the guppy, Poecilia reticulata. Immunogenetics 43: 88-49.
31. SHINTANI, S., C. O'HUIGIN, S. TOYOSAWA, V. MICHALOVÁ and J. KLEIN, 1999 Origin of gene overlap: the case of TCP1 and ACAT2. Genetics 152: 743-754.
32. SILVER, L. M., 1985 Mouse t haplotypes. Annu. Rev. Genet. 19: 179-208.
33. SILVER, L. M., K. ARTZT and D. BENNETT, 1979 A major testicular cell protein specified by a mouse T/t complex gene. Cell 17: 275-284.
34. SÜLTMANN, H., W. E. MAYER, F. FIGUEROA, C. O'HUIGIN and J. KLEIN, 1994 Organization of Mhc class II B genes in the zebrafish (Brachydanio rerio. Genomics 23: 1-14.
35. SWOFFORD, D. D., 1993 PAUP: Phylogenetic Analysis Using Parsimony Version 3.1.1. Illinois Natural History Survey, Champaign, IL.
36. TAKAMI, K., Z. ZALESKA-RUTCZYNSKA, F. FIGUEROA and J. KLEIN, 1997 Linkage of LMP, TAP, and RING3 with Mhc class I rather than class II genes in the zebrafish. J. Immunol. 159: 6052-6060.
37. TAKEUCHI, H., F. FIGUEROA, C. O'HUIGIN and J. KLEIN, 1995 Cloning and characterization of class I Mhc genes of the zebrafish, Brachydanio rerio. Immunogenetics 42: 77-84.
38. TRACHTULEC, Z., R. M. HAMVAS, J. FOREJT, H. R. LEHRACH, V. VINCEK et al., 1997 Linkage of TATA-binding protein and proteasome subunit C5 genes in mice and humans reveals synteny conserved between mammals and invertebrates. Genomics 44: 1-7.
39. URSIC, D., and M. R. CULBERTSON, 1991 The yeast homolog to mouse Tcp-1 affects microtubule-mediated processes. Mol. Cell. Biol. 11: 2629-2640.
40. URSIC, D., and B. A. GANETZKY, 1988 A Drosophila melanogaster gene encodes a protein homologous to the mouse t complex polypeptide 1. Gene 68: 267-274.
41. VIHTELIC, T. S., C. J. DORO and D. R. HYDE, 1999 Cloning and characterization of six zebrafish photoreceptor opsin cDNAs and immunolocation of their corresponding proteins. Vis. Neurosci. 16: 571-585.
42. WILLETT, C. E., J. J. CHERRY and L. A. STEINER, 1997 Characterization and expression of the recombination activating genes (rag1 and rag2) of zebrafish and shark. Immunogenetics 45: 394-404.
43. WILLISON, K. R., and H. KUBOTA, 1994 The structure, function and genetics of the chaperonin containing TCP-1 (CCT) in eukaryotic cytosol, pp. 299-321 in The Biology of Heat Shock Proteins and Molecular Chaperones, edited by R. I. MORIMOTO, A. TISSIERES and C. GEORGOPOULUS. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
44. WILLISON, K. R., K. DUDLEY and J. POTTER, 1986 Molecular cloning and sequence analysis of a haploid expressed gene encoding t complex polypepetide 1. Cell 44: 727-738.